genome.fa.s18.2.7.7.80.10.50.1000.195.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  195  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61621474--61621514	19	2.2	19	86	0	55	68	0	4	26	1.10
61624652--61624698	18	2.6	18	80	12	51	70	2	12	14	1.26
61624995--61625031	14	2.4	16	82	8	51	62	0	0	37	0.96
61624976--61625035	22	2.6	24	85	12	74	61	0	0	38	0.96
61626095--61626126	16	1.9	17	93	6	57	75	3	18	3	1.08
61626149--61626183	18	1.9	18	94	0	61	74	0	25	0	0.82
61627557--61627588	16	1.9	17	93	6	57	75	3	18	3	1.08
61629117--61629153	14	2.4	16	82	8	51	62	0	0	37	0.96
61629098--61629157	22	2.6	24	85	12	74	61	0	0	38	0.96
61642107--61642180	20	3.7	20	83	5	96	55	12	0	32	1.37
61642155--61642203	18	2.7	18	84	6	55	53	8	0	38	1.31
61642108--61642243	20	7.2	19	71	16	81	53	9	0	36	1.34
61642206--61642248	10	4.3	10	80	19	54	55	6	0	37	1.27
61642260--61642286	13	2.1	13	100	0	54	59	0	0	40	0.98
61642999--61643070	23	3.1	23	69	15	67	51	16	12	19	1.76
61643858--61643900	11	3.8	12	84	9	54	23	27	0	48	1.51
61643862--61643899	11	3.5	11	88	0	58	23	26	0	50	1.50
61644230--61644807	115	5.0	115	99	0	1113	33	8	28	30	1.86
61651701--61651733	16	2.1	16	94	0	57	36	3	36	24	1.71
61651950--61652242	120	2.4	121	93	2	484	50	5	1	42	1.35
61651995--61652181	61	3.1	61	68	20	183	49	7	1	41	1.40
61652043--61652240	59	3.3	58	68	21	133	52	4	2	41	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61652283--61652343	28	2.2	28	85	5	81	50	3	0	45	1.17
61652183--61652461	91	2.9	93	82	8	307	48	3	2	44	1.36
61652258--61652465	91	2.3	90	88	4	308	46	4	3	45	1.41
61652283--61652425	44	3.2	44	67	20	114	47	4	2	46	1.33
61652311--61652446	44	3.0	47	68	22	133	48	5	2	44	1.37
61655968--61656073	43	2.5	41	86	9	142	44	2	4	48	1.38
61655995--61656067	23	3.3	23	66	11	71	47	4	2	45	1.36
61657627--61657681	22	2.5	22	88	5	76	41	23	12	21	1.88
61658224--61658317	46	2.0	46	100	0	188	17	19	22	41	1.90
61664184--61664234	15	3.5	14	72	17	50	66	0	0	33	0.92
61664186--61664232	14	3.1	15	77	20	53	68	0	0	31	0.90
61665211--61665448	46	5.2	46	91	1	383	29	21	14	34	1.93
61670628--61670659	16	1.9	17	93	6	57	75	3	18	3	1.08
61672160--61672226	14	4.7	14	71	20	50	65	0	0	34	0.93
61673575--61673604	15	2.0	15	93	0	51	43	3	0	53	1.17
61678616--61678677	30	2.1	30	82	8	74	45	1	3	50	1.27
61678801--61679242	235	1.9	235	93	0	767	30	13	17	38	1.88
61680260--61680297	16	2.4	16	90	0	58	34	2	34	28	1.71
61680276--61680373	44	2.2	44	87	8	137	31	5	28	34	1.79
61680535--61680569	17	2.0	18	94	5	63	60	0	0	40	0.97
61680602--61680645	22	2.0	23	90	4	72	63	2	0	34	1.07
61680522--61680872	120	3.0	120	89	5	549	52	4	1	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61680834--61680874	21	2.0	21	100	0	82	56	9	0	34	1.32
61687415--61687827	44	9.5	43	73	8	223	27	22	20	30	1.98
61687404--61687564	87	1.9	87	82	2	207	26	23	20	29	1.99
61687364--61687831	214	2.2	214	88	3	679	26	22	20	30	1.98
61700520--61700592	33	2.2	32	79	18	78	47	2	6	42	1.44
61701873--61701980	23	4.9	23	81	8	136	36	23	22	18	1.95
61702145--61702186	3	14.0	3	100	0	84	66	0	0	33	0.92
61707339--61707409	32	2.2	32	85	9	92	52	1	0	46	1.09
61712373--61712419	22	2.2	23	82	17	66	61	8	0	29	1.25
61712375--61712446	21	3.7	20	78	15	71	59	6	0	33	1.24
61712442--61712481	18	2.2	18	90	0	62	60	5	0	35	1.19
61712485--61712527	19	2.3	18	84	11	52	65	2	4	27	1.25
61718727--61718844	13	9.1	13	81	2	121	31	6	25	36	1.82
61726530--61726582	26	2.0	26	96	0	97	30	37	15	16	1.90
61729647--61729686	21	1.9	21	84	0	53	42	7	15	35	1.75
61741058--61741084	11	2.5	11	100	0	54	59	0	0	40	0.98
61741695--61741746	20	2.6	20	96	0	95	55	9	3	30	1.50
61741693--61741823	20	6.4	20	72	20	94	54	8	1	35	1.40
61741829--61741871	20	2.2	19	87	4	59	69	0	4	25	1.07
61748211--61748269	27	2.2	27	82	14	70	8	18	3	69	1.28
61749923--61749948	12	2.2	12	100	0	52	34	7	34	23	1.83
61751569--61751610	21	2.0	21	81	9	50	7	21	23	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61780956--61780996	21	2.0	21	90	0	64	29	21	29	19	1.98
61785509--61785921	204	2.0	204	87	0	585	25	28	15	30	1.96
61785713--61786939	228	5.5	227	86	2	1666	25	27	16	30	1.97
61785708--61786939	450	2.8	450	87	3	1726	25	27	16	30	1.97
61787469--61787821	176	2.0	174	82	3	431	36	18	16	28	1.93
61787855--61787911	29	2.0	29	89	0	87	28	17	8	45	1.78
61799429--61799474	23	2.0	23	91	0	74	13	26	26	34	1.92
61815901--61815968	27	2.5	27	95	0	118	26	26	27	19	1.99
61816780--61816846	28	2.4	27	82	7	89	43	10	1	44	1.47
61816848--61816881	17	2.0	17	88	11	52	82	5	5	5	0.95
61819060--61819097	18	2.1	18	95	0	67	13	47	5	34	1.65
61819063--61819104	18	2.3	18	87	0	66	19	50	2	28	1.60
61819719--61819836	61	1.9	62	84	10	161	54	11	0	33	1.37
61819842--61819867	3	8.7	3	100	0	52	65	0	0	34	0.93
61820156--61820249	27	3.5	27	92	0	152	17	30	28	23	1.97
61820332--61820400	28	2.5	29	86	6	99	47	1	10	40	1.46
61829147--61829221	33	2.3	33	97	0	141	46	16	17	20	1.84
61831603--61832076	222	2.1	223	85	2	626	25	26	16	31	1.96
61833681--61833721	21	2.0	21	81	18	50	24	26	17	31	1.97
61837128--61838177	228	4.7	228	89	2	1613	24	28	16	30	1.96
61837128--61838177	450	2.3	446	90	2	1561	24	28	16	30	1.96
61838954--61838999	20	2.3	20	85	14	60	26	10	28	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61838981--61839036	29	1.9	29	85	0	76	14	8	37	39	1.77
61839043--61839095	21	2.5	21	84	0	70	20	3	28	47	1.68
61854138--61854230	18	5.2	18	86	0	141	27	22	17	32	1.96
61854138--61854230	36	2.6	36	92	0	159	27	22	17	32	1.96
61864274--61864313	21	1.9	21	89	0	62	35	0	2	62	1.09
61864546--61864585	3	13.3	3	100	0	80	32	0	0	67	0.91
61867486--61867526	21	2.0	21	81	18	50	21	26	19	31	1.97
61887591--61887667	26	3.1	24	77	9	75	67	0	20	11	1.22
61888494--61888541	3	16.0	3	91	0	78	33	4	0	62	1.14
61890517--61890542	12	2.2	12	100	0	52	7	15	30	46	1.74
61890611--61890977	114	3.2	114	88	2	535	23	22	27	25	2.00
61890909--61891018	41	2.7	40	88	5	150	20	22	30	27	1.98
61890795--61891094	155	1.9	155	87	4	435	23	21	27	27	1.99
61891338--61891379	15	2.9	14	82	6	57	21	0	40	38	1.53
61891632--61891722	36	2.5	36	77	8	94	24	0	37	38	1.56
61891670--61891704	14	2.5	13	86	13	52	22	0	40	37	1.55
61891648--61891717	15	4.9	14	77	11	61	22	0	37	40	1.55
61892208--61893610	145	9.7	145	92	5	2290	44	14	16	24	1.84
61892658--61892698	20	2.0	20	85	0	55	73	2	0	24	0.96
61892208--61893814	433	3.7	433	92	5	2577	45	14	15	24	1.84
61893091--61893131	20	2.0	20	85	0	55	73	2	0	24	0.96
61893488--61893733	123	2.0	125	92	2	415	46	12	13	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61895883--61895931	25	1.9	26	84	12	66	26	2	6	65	1.27
61897592--61897760	86	2.0	86	89	2	259	27	15	25	31	1.95
61897599--61897778	43	4.2	43	86	1	227	26	17	25	31	1.97
61908175--61908216	13	3.2	13	80	13	50	33	0	0	66	0.92
61908298--61908326	15	1.9	15	100	0	58	41	0	10	48	1.37
61913444--61913493	15	3.1	15	76	15	55	44	0	2	54	1.11
61913531--61913561	16	2.0	16	93	6	55	38	0	0	61	0.96
61918124--61918166	16	2.6	17	82	7	54	37	0	16	46	1.47
61920797--61920884	6	14.7	6	100	0	176	32	0	17	50	1.46
61923453--61923517	29	2.2	29	89	5	96	23	9	20	47	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199