genome.fa.s18.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  111  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36756655--36756764	41	2.7	40	88	1	157	22	29	19	29	1.98
36760056--36760290	47	5.1	47	66	20	129	45	2	4	47	1.37
36760042--36760413	91	4.0	91	88	5	505	46	2	3	46	1.35
36760268--36760313	12	3.3	15	74	25	55	41	0	0	58	0.98
36760340--36760527	53	3.3	52	68	24	137	46	3	2	47	1.32
36760355--36760393	17	2.5	15	84	12	51	46	2	0	51	1.14
36760340--36760422	26	3.2	25	73	13	69	45	2	0	51	1.14
36760408--36760454	24	2.0	24	84	15	64	40	6	2	51	1.39
36760474--36760509	16	2.2	17	90	9	58	44	0	0	55	0.99
36760665--36760761	47	2.1	47	85	9	130	40	27	1	30	1.63
36760749--36760796	16	3.0	16	90	0	69	25	31	2	41	1.67
36767467--36767508	15	2.9	15	86	6	61	26	0	0	73	0.83
36767470--36767526	28	2.0	29	82	3	71	31	0	0	68	0.90
36771567--36771618	16	3.2	16	91	0	77	28	0	34	36	1.58
36771599--36771693	45	2.1	44	84	1	118	34	6	25	33	1.81
36771855--36771889	18	2.0	17	88	5	52	54	0	0	45	0.99
36771813--36771885	27	2.7	27	76	8	76	52	2	0	45	1.15
36771999--36772033	18	2.0	17	88	5	52	54	0	0	45	0.99
36771774--36772045	144	1.9	147	93	3	478	46	3	2	47	1.35
36772017--36772199	53	3.1	58	67	22	153	49	6	2	42	1.39
36772101--36772153	16	3.4	17	73	21	53	56	0	0	43	0.99
36771988--36772273	119	2.4	120	94	1	495	50	4	2	43	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36772027--36772213	60	3.1	59	66	13	157	49	6	2	41	1.42
36771993--36772272	59	4.7	58	65	16	162	50	4	2	42	1.35
36776572--36776628	16	3.6	16	95	0	87	29	0	36	33	1.58
36776874--36776908	18	2.0	17	88	5	52	54	0	0	45	0.99
36777008--36777048	16	2.6	16	84	11	57	53	0	0	46	1.00
36776761--36777072	154	2.0	154	94	3	547	44	2	5	47	1.38
36777008--36777058	15	3.5	15	84	10	61	52	0	0	47	1.00
36777056--36777240	59	3.1	59	66	16	155	49	7	2	40	1.44
36777014--36777308	120	2.5	118	89	6	447	50	4	2	41	1.37
36777125--36777176	15	3.6	15	80	12	56	53	1	0	44	1.11
36777102--36777192	44	2.1	43	81	6	103	53	3	2	40	1.29
36777261--36777299	17	2.5	15	80	15	51	51	0	5	43	1.24
36777266--36777299	17	2.0	17	94	0	59	50	0	5	44	1.26
36777332--36777526	93	2.1	92	88	4	286	47	4	4	44	1.41
36778923--36778949	11	2.5	11	100	0	54	51	18	7	22	1.70
36781193--36781223	15	2.1	15	100	0	62	45	0	19	35	1.51
36785548--36785605	30	1.9	31	82	10	75	44	5	3	46	1.42
36806287--36806351	12	5.8	12	71	14	50	6	26	0	67	1.13
36806287--36806351	23	2.9	23	80	13	82	6	26	0	67	1.13
36818134--36818322	50	3.7	50	80	5	191	25	19	29	24	1.98
36827682--36827725	18	2.4	19	79	20	58	43	0	13	43	1.44
36829005--36829045	21	2.0	21	85	0	55	29	19	36	14	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36837357--36837438	20	4.2	19	79	10	85	48	12	8	30	1.70
36839223--36839257	17	2.1	17	94	5	63	45	0	11	42	1.40
36839365--36839428	20	3.0	22	86	6	80	46	9	9	34	1.68
36839451--36839496	20	2.3	20	84	0	56	39	2	10	47	1.51
36840500--36840565	18	3.7	18	88	8	82	68	0	0	31	0.90
36840507--36840565	9	6.8	9	96	3	104	67	0	0	32	0.91
36841388--36841442	29	2.0	27	82	7	65	60	3	7	29	1.41
36859618--36859654	18	2.2	18	85	9	51	45	16	2	35	1.61
36861680--36861825	37	4.0	37	92	1	233	25	21	16	36	1.94
36861789--36862016	52	4.7	46	87	7	294	28	21	14	35	1.93
36861878--36861911	7	4.7	7	88	3	50	26	26	2	44	1.69
36869009--36869043	18	2.0	17	88	5	52	34	17	0	48	1.47
36870399--36870463	19	3.3	19	76	20	62	61	1	1	35	1.15
36870398--36870472	38	1.9	39	86	2	107	61	1	1	36	1.13
36870394--36870452	28	2.1	28	84	6	75	67	1	1	28	1.10
36870595--36870642	10	5.0	10	82	10	64	35	2	2	60	1.20
36870596--36870642	19	2.5	19	86	10	69	34	2	2	61	1.20
36872621--36872782	53	3.0	55	84	4	231	50	17	7	24	1.71
36875589--36875658	27	2.6	27	95	2	113	31	28	12	27	1.93
36875589--36875686	28	3.5	28	90	2	135	31	28	13	26	1.94
36890690--36890736	26	2.0	24	84	16	62	44	17	2	36	1.60
36894438--36894467	13	2.2	13	94	5	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36894711--36894757	20	2.3	20	85	0	58	51	8	8	31	1.63
36901781--36901850	20	3.4	20	75	11	70	10	22	22	44	1.83
36902913--36902966	27	2.0	28	85	10	76	44	5	1	48	1.37
36910499--36910941	45	9.9	45	95	0	780	25	20	15	37	1.92
36910499--36910939	224	2.0	224	96	0	810	26	20	15	37	1.92
36911228--36911282	20	2.8	20	85	0	74	29	18	27	25	1.98
36914419--36914483	20	3.2	20	78	8	85	21	16	23	38	1.93
36914417--36914474	22	2.8	21	84	5	73	24	18	24	32	1.97
36918335--36918431	43	2.3	43	83	1	124	27	24	18	28	1.98
36921398--36921476	26	3.0	25	88	0	104	35	25	21	17	1.95
36921406--36921476	26	2.7	26	93	0	115	35	25	22	16	1.95
36921632--36921783	27	5.6	27	82	4	110	21	17	21	39	1.92
36921645--36921783	54	2.6	53	84	2	197	20	18	20	40	1.92
36929252--36929364	26	4.3	26	87	0	154	31	24	24	18	1.97
36929252--36929383	52	2.5	52	83	2	158	33	23	22	20	1.97
36929252--36929383	26	5.1	26	85	1	140	33	23	22	20	1.97
36929554--36929695	27	5.3	27	82	3	162	20	15	18	45	1.85
36929545--36929695	81	1.9	81	80	5	180	21	15	18	44	1.86
36929552--36929687	54	2.5	54	84	2	184	20	16	18	44	1.86
36933550--36933599	20	2.5	20	96	0	91	22	22	4	52	1.64
36938959--36939003	23	2.0	23	81	0	54	24	20	15	40	1.91
36940890--36941004	20	5.8	20	71	11	83	41	10	14	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36940900--36940994	40	2.4	40	83	3	120	43	8	15	32	1.77
36943285--36943350	32	2.0	33	83	13	84	28	7	9	54	1.59
36946469--36946810	168	2.0	173	94	3	613	27	18	11	43	1.84
36950272--36950296	3	8.3	3	100	0	50	64	0	0	36	0.94
36950841--36950901	31	2.0	31	90	6	97	44	11	1	42	1.50
36952420--36952498	33	2.4	33	85	4	106	39	27	10	22	1.86
36959311--36959357	20	2.6	17	76	23	51	46	4	2	46	1.34
36961206--36961280	11	6.8	11	71	24	52	53	2	1	42	1.23
36961180--36961245	25	2.6	25	77	13	64	50	4	3	42	1.38
36961169--36961280	36	3.1	37	76	13	108	51	4	1	41	1.32
36968218--36968377	11	13.1	12	68	21	57	50	1	3	44	1.28
36969966--36969990	12	2.1	12	100	0	50	20	8	24	48	1.76
36981445--36981616	40	4.3	40	91	2	249	25	29	20	24	1.99
36981445--36981669	80	2.8	78	80	6	220	26	28	20	24	1.99
36981447--36981669	119	1.9	120	80	6	265	26	28	21	24	1.99
36982792--36982911	56	2.1	56	98	0	231	22	23	9	45	1.81
37003408--37003592	40	4.7	40	82	6	216	24	28	22	24	2.00
37003410--37003592	79	2.3	81	82	7	214	24	27	22	24	2.00
37012425--37012718	43	6.8	43	78	4	272	22	15	24	38	1.92
37012425--37012718	86	3.4	85	79	9	303	22	15	24	38	1.92
37012454--37012789	129	2.6	129	80	2	336	22	16	22	37	1.93
37012429--37012792	43	8.5	42	75	8	259	22	16	22	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37012740--37012835	43	2.2	43	83	3	113	25	19	17	37	1.94
37015414--37015469	29	1.9	29	92	7	96	19	17	37	25	1.94
37017024--37017064	15	2.7	15	88	7	57	21	12	12	53	1.70
37019176--37019406	41	5.6	40	76	4	183	35	20	17	25	1.95
37019177--37019406	82	2.8	81	80	3	264	36	20	17	26	1.94
37024181--37024207	12	2.2	12	100	0	54	55	7	7	29	1.55
37024234--37024471	51	4.6	51	90	3	343	47	5	1	44	1.35
37035343--37036106	390	2.0	390	87	1	1100	24	27	20	26	1.99
37043900--37043982	43	1.9	43	85	4	114	26	21	13	38	1.90
37043902--37043992	43	2.1	43	81	4	103	27	21	12	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199