genome.fa.s18.2.7.7.80.10.50.1000.188.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  188  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59725212--59725257	22	2.1	22	88	8	67	69	0	0	30	0.89
59727359--59727527	88	1.9	87	89	3	259	37	13	13	35	1.84
59729252--59729288	18	2.1	17	90	5	56	43	8	0	48	1.32
59755528--59755562	18	2.1	18	89	10	56	40	11	8	40	1.72
59755498--59755591	45	2.1	45	97	0	179	36	10	8	44	1.70
59757628--59757673	22	2.1	22	84	4	58	54	2	4	39	1.32
59757667--59757703	19	1.9	19	89	10	58	48	5	2	43	1.40
59757667--59757704	20	1.9	19	89	5	58	50	5	2	42	1.39
59761736--59761768	15	2.2	15	89	10	50	42	45	6	6	1.53
59762991--59763055	28	2.3	29	75	19	66	33	3	7	55	1.44
59763232--59763271	17	2.4	17	82	0	53	40	0	2	57	1.12
59774739--59774787	24	2.0	24	100	0	98	46	12	20	20	1.82
59775407--59775743	44	7.6	46	71	14	163	30	20	21	27	1.98
59775628--59775774	44	3.3	44	90	0	213	29	19	21	29	1.97
59775453--59775836	88	4.4	89	72	9	238	30	19	21	28	1.97
59776204--59776236	15	2.2	15	89	10	50	42	45	6	6	1.53
59777373--59777427	3	18.7	3	74	10	51	29	3	3	63	1.28
59777373--59777413	17	2.4	18	88	8	59	29	2	2	65	1.18
59777699--59777738	17	2.4	17	82	0	53	40	0	2	57	1.12
59784497--59784544	20	2.4	21	79	10	55	64	0	0	35	0.94
59785201--59785268	30	2.3	30	84	0	91	55	19	22	2	1.56
59786006--59786088	42	2.0	42	90	0	130	14	38	26	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59786053--59786281	104	2.2	106	85	6	306	22	31	21	24	1.98
59788170--59788271	45	2.3	45	81	3	107	43	12	19	24	1.86
59788393--59788477	27	3.1	27	74	0	80	40	10	27	22	1.87
59790022--59790060	18	2.2	18	95	0	69	48	12	23	15	1.79
59792871--59792944	38	1.9	38	89	5	114	35	29	6	28	1.83
59793549--59793609	20	3.1	19	72	13	52	37	9	8	44	1.68
59794003--59794379	124	3.0	124	90	1	612	29	15	21	32	1.95
59797520--59798028	23	23.0	22	81	10	492	25	0	28	45	1.58
59797520--59798028	66	7.7	65	82	9	550	25	0	28	45	1.58
59797543--59798027	44	11.0	44	85	6	547	25	0	28	45	1.57
59798055--59798091	9	4.2	9	96	3	67	59	10	0	29	1.31
59798094--59798141	25	1.9	25	95	0	87	39	12	0	47	1.41
59798570--59798609	18	2.2	18	95	0	71	40	7	30	22	1.81
59799447--59799484	20	1.9	20	84	10	51	55	7	2	34	1.43
59800469--59800504	11	3.2	11	88	4	54	44	2	36	16	1.63
59803629--59803679	24	2.2	24	77	22	56	33	0	5	60	1.21
59810094--59810143	26	1.9	26	87	0	73	40	4	10	46	1.56
59813502--59813537	18	2.0	18	94	0	63	41	27	13	16	1.87
59815549--59815661	56	2.0	56	92	0	190	34	18	17	29	1.94
59815708--59815766	29	2.0	29	93	0	100	55	10	6	27	1.58
59817474--59817509	18	2.0	18	88	0	54	30	13	30	25	1.94
59817897--59817944	22	2.1	23	85	11	64	56	16	6	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59820799--59820826	5	5.6	5	100	0	56	57	0	0	42	0.99
59825286--59825363	31	2.6	30	78	11	90	35	16	8	38	1.80
59830434--59830483	25	2.0	25	100	0	100	36	8	4	52	1.50
59847201--59847240	14	2.9	14	84	0	53	35	7	15	42	1.75
59847224--59847263	20	2.0	20	90	0	62	30	10	10	50	1.69
59847361--59847399	20	2.0	20	94	0	69	48	2	0	48	1.15
59854813--59854848	16	2.2	16	90	0	54	27	44	19	8	1.79
59857877--59857934	18	3.4	16	83	7	62	65	3	8	22	1.36
59862632--59862684	24	2.2	24	100	0	106	39	11	11	37	1.77
59867468--59867499	15	2.2	14	94	5	55	18	0	0	81	0.70
59874298--59874353	26	2.2	26	83	6	69	58	0	1	39	1.08
59875023--59875078	25	2.3	25	84	3	78	48	28	3	19	1.66
59887223--59887311	46	1.9	46	93	0	151	43	37	11	7	1.70
59901601--59902191	169	3.5	170	94	4	1034	31	20	20	27	1.97
59901991--59902275	44	6.6	44	71	13	130	30	22	21	25	1.99
59902893--59902973	41	2.0	41	83	9	103	43	35	12	8	1.73
59903966--59904025	16	3.6	17	80	10	63	28	6	1	63	1.29
59904303--59904367	27	2.5	25	78	14	69	36	9	3	50	1.50
59904528--59904558	5	6.4	5	96	3	55	19	0	0	80	0.71
59907938--59908266	46	7.6	44	73	12	184	31	21	20	26	1.98
59907981--59908267	44	6.7	44	71	15	140	31	21	21	26	1.98
59908108--59908307	87	2.3	88	80	6	208	30	21	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59912019--59912048	14	2.1	14	100	0	60	30	6	30	33	1.83
59921437--59921500	28	2.2	30	83	8	78	48	4	1	45	1.32
59922004--59922036	2	16.5	2	93	0	57	45	0	0	54	0.99
59924354--59924379	3	8.7	3	100	0	52	65	0	0	34	0.93
59938375--59938425	5	10.8	5	79	12	63	45	0	0	54	0.99
59944759--59944798	20	2.0	20	90	0	62	30	0	5	65	1.14
59951660--59951736	37	2.1	37	100	0	154	27	24	19	28	1.99
59956691--59956850	86	1.9	85	96	1	293	38	15	11	35	1.83
59967279--59967327	25	1.9	26	83	4	64	69	6	6	18	1.31
59967892--59967950	22	2.5	25	81	15	72	61	1	0	37	1.07
59981776--59981853	38	2.1	38	97	0	147	32	23	10	34	1.88
59998856--59998970	37	3.1	37	69	12	101	43	19	19	18	1.88
59998854--59999085	73	3.2	73	80	2	263	44	20	17	17	1.86
59998880--59998997	37	3.2	37	70	11	116	44	18	19	17	1.88
60000454--60000499	23	2.0	23	83	8	58	26	6	0	67	1.15
60001912--60001942	16	1.9	16	93	0	53	41	0	0	58	0.98
60011380--60011435	25	2.2	25	79	14	62	71	3	1	23	1.11
60011809--60011838	3	10.0	3	92	0	51	63	0	3	33	1.11
60013283--60014098	133	6.2	133	96	0	1465	27	22	18	30	1.98
60014102--60014324	46	4.9	46	92	0	358	30	30	14	24	1.95
60015509--60015560	8	7.0	7	77	16	52	15	15	0	69	1.20
60015518--60015561	8	5.6	8	83	5	63	13	13	0	72	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60015509--60015561	15	3.5	15	89	5	72	15	15	0	69	1.19
60015509--60015560	23	2.3	22	86	3	68	15	15	0	69	1.20
60016387--60016419	9	3.8	9	92	8	59	6	0	9	84	0.76
60016364--60016421	28	2.1	28	80	6	64	8	6	6	77	1.12
60016387--60016419	17	1.9	17	100	0	66	6	0	9	84	0.76
60020187--60020222	3	12.0	3	93	0	63	63	0	2	33	1.08
60025085--60026756	322	5.2	315	79	7	1568	35	16	14	33	1.89
60025085--60026673	638	2.5	634	80	5	1709	36	16	14	32	1.89
60046087--60046144	30	1.9	30	82	6	73	41	15	3	39	1.64
60046727--60046753	5	5.4	5	100	0	54	59	0	0	40	0.98
60049832--60049861	14	2.1	14	100	0	60	46	6	6	40	1.56
60056420--60056933	256	2.0	256	92	0	857	34	20	16	28	1.94
60058095--60058185	39	2.3	39	90	3	139	50	24	2	23	1.60
60058497--60058572	21	3.5	21	70	5	53	69	0	25	5	1.09
60058849--60058917	9	7.7	9	73	12	52	63	1	2	31	1.18
60058899--60058949	21	2.4	22	83	9	61	58	3	0	37	1.16
60058904--60058974	22	3.4	21	79	12	67	60	5	0	33	1.20
60058851--60058990	10	14.3	10	66	12	69	61	3	2	32	1.25
60058965--60059039	28	2.7	27	73	4	69	60	2	4	33	1.30
60059435--60059681	9	26.6	9	66	19	73	36	4	2	56	1.33
60059464--60059579	38	3.1	37	79	12	103	35	4	1	58	1.28
60062903--60062938	17	2.1	18	89	5	56	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60070954--60070996	19	2.3	18	80	7	50	81	2	4	11	0.93
60070945--60070996	17	2.9	18	75	11	61	76	3	3	15	1.07
60072202--60072317	55	2.1	55	82	6	137	23	13	12	50	1.77
60073240--60073286	22	2.0	23	88	8	69	63	0	4	31	1.13
60076911--60076940	14	2.1	14	100	0	60	33	0	20	46	1.51
60082381--60082814	131	3.3	130	83	1	508	34	13	13	38	1.84
60082597--60082813	64	3.4	64	77	11	237	33	13	14	38	1.85
60090541--60090574	10	3.4	10	91	0	50	17	2	2	76	1.04
60090548--60090578	10	3.1	10	95	0	53	12	0	6	80	0.89
60091081--60091137	28	2.1	28	86	3	80	35	1	7	56	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199