genome.fa.s18.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  91  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31473316--31473373	11	5.4	11	73	17	50	0	20	0	79	0.74
31473401--31473436	19	1.9	19	94	5	65	0	22	50	27	1.50
31473391--31473488	24	4.3	24	82	13	118	1	29	44	24	1.60
31473661--31473745	10	8.5	10	76	13	86	0	24	1	74	0.89
31473659--31473745	20	4.5	19	81	13	99	0	24	1	74	0.88
31473686--31473747	3	20.3	3	78	18	58	0	29	0	70	0.87
31474099--31474267	30	5.7	30	77	5	146	39	5	21	33	1.77
31474550--31475057	77	6.6	77	92	3	760	35	19	17	28	1.94
31474477--31475073	153	3.9	153	87	4	769	35	19	16	28	1.94
31475930--31476002	16	4.3	16	75	25	53	0	8	9	82	0.85
31475925--31475970	22	2.1	22	92	8	76	0	10	4	84	0.75
31475924--31476003	19	4.3	18	75	13	63	0	8	8	82	0.84
31475941--31476004	27	2.4	27	82	12	78	0	6	10	82	0.82
31475924--31476003	11	7.5	10	78	14	54	0	8	8	82	0.84
31487055--31487416	17	20.5	17	72	12	196	45	10	12	31	1.76
31487224--31487323	20	5.3	19	74	12	82	44	9	11	36	1.71
31487280--31487323	21	2.2	20	87	4	61	40	9	11	38	1.73
31487708--31487732	5	5.0	5	100	0	50	80	0	0	20	0.72
31487910--31487934	7	3.6	7	100	0	50	0	12	0	88	0.53
31487902--31487944	18	2.4	17	88	11	59	0	16	0	83	0.64
31488003--31488073	24	3.0	24	91	0	106	1	32	42	23	1.63
31487982--31488049	24	3.4	19	72	20	66	0	29	47	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31488269--31488317	3	16.3	3	87	12	66	0	30	0	69	0.89
31488257--31488331	36	2.0	38	82	10	93	2	28	4	65	1.24
31488668--31488836	30	5.7	30	80	2	189	38	4	23	33	1.76
31488667--31488836	59	2.8	60	79	6	193	38	4	23	32	1.76
31489231--31489817	44	13.3	44	82	4	594	32	22	13	31	1.92
31489231--31489821	177	3.4	175	85	3	681	32	22	13	31	1.92
31489243--31489812	221	2.6	219	84	6	724	32	22	12	31	1.92
31491108--31491155	22	2.1	23	88	11	73	12	12	0	75	1.06
31496001--31496037	3	12.0	3	88	5	56	67	2	0	29	1.04
31498633--31498706	27	2.8	26	87	4	112	18	22	18	39	1.93
31502484--31502513	5	6.2	5	92	7	53	60	40	0	0	0.97
31503914--31503947	3	11.0	3	93	6	59	32	0	0	67	0.91
31508519--31509283	44	17.2	44	82	3	744	31	17	20	30	1.95
31513444--31513522	3	25.3	3	72	10	52	30	6	2	60	1.35
31513443--31513515	30	2.4	29	80	15	78	28	8	2	60	1.40
31513570--31513623	27	2.0	27	96	0	99	18	27	33	20	1.96
31514085--31514137	12	4.6	12	79	9	56	37	5	0	56	1.23
31516153--31516177	2	12.5	2	100	0	50	52	48	0	0	1.00
31524129--31524180	26	2.0	26	96	0	95	13	23	34	28	1.92
31524051--31524415	102	3.6	102	94	2	610	19	20	29	30	1.97
31531163--31531386	104	2.2	104	92	1	369	17	19	31	31	1.95
31531305--31531455	70	2.1	71	88	2	232	23	17	28	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31531414--31531465	27	1.9	27	92	0	86	15	23	32	28	1.95
31566506--31566574	3	23.0	3	100	0	138	33	0	0	66	0.92
31570617--31570655	20	2.0	20	85	10	53	56	2	15	25	1.52
31571235--31571266	3	10.7	3	100	0	64	34	0	0	65	0.93
31571903--31571936	17	1.9	18	88	5	52	73	5	8	11	1.24
31573596--31573625	15	2.0	15	100	0	60	33	13	13	40	1.83
31574790--31575596	150	5.3	148	85	7	1052	29	10	7	51	1.64
31574790--31575591	304	2.6	303	88	5	1217	30	10	7	51	1.64
31575464--31575695	118	2.0	118	90	4	369	31	9	8	51	1.64
31575582--31575866	151	1.9	153	88	2	432	28	11	8	50	1.69
31575312--31575863	269	2.0	273	92	2	916	30	10	8	50	1.66
31583774--31583919	61	2.4	60	75	6	141	41	16	4	38	1.67
31585060--31585272	107	2.0	107	85	3	286	31	22	15	30	1.95
31595925--31595971	20	2.3	20	88	0	67	29	6	8	55	1.55
31600522--31600662	63	2.3	62	82	6	160	26	28	20	24	1.99
31601945--31602129	91	2.0	91	98	0	361	40	15	5	38	1.72
31605258--31605310	27	2.0	27	81	7	63	67	3	18	9	1.33
31605540--31605583	19	2.4	18	82	14	54	50	2	2	45	1.27
31608689--31608715	3	9.0	3	100	0	54	33	0	0	66	0.92
31610981--31611014	11	3.0	11	91	4	50	58	11	0	29	1.33
31610997--31611051	19	2.9	19	73	13	51	60	3	0	36	1.15
31617384--31617413	16	1.9	16	93	6	53	40	0	3	56	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31617401--31617442	16	2.7	16	77	3	50	57	0	2	40	1.12
31617402--31617463	28	2.2	28	77	5	72	53	0	1	45	1.10
31617464--31617521	16	3.7	16	75	11	57	48	0	1	50	1.11
31617576--31617610	17	2.1	17	88	0	52	60	0	0	40	0.97
31621864--31621898	18	2.0	17	88	5	52	45	0	0	54	0.99
31621852--31622168	157	2.0	157	98	0	607	47	5	3	44	1.41
31622021--31622055	18	2.0	17	88	5	52	45	0	0	54	0.99
31621853--31622091	75	3.1	75	64	18	200	46	3	3	46	1.35
31622201--31622310	45	2.6	44	80	8	122	31	28	4	35	1.77
31622289--31622358	16	4.4	16	94	0	104	34	34	0	31	1.58
31628871--31628910	20	2.0	20	90	5	62	35	2	0	62	1.09
31638445--31638488	22	2.0	22	82	8	54	34	15	15	34	1.90
31641504--31641544	14	2.7	15	85	7	57	21	2	2	73	1.07
31645211--31645251	14	2.7	15	85	7	57	21	2	2	73	1.07
31665781--31665809	2	15.0	2	92	7	51	51	0	0	48	1.00
31671335--31671365	15	2.1	15	100	0	62	48	12	6	32	1.67
31672248--31672309	30	2.1	30	82	11	74	48	4	0	46	1.23
31674268--31674426	82	2.0	82	82	7	200	34	18	13	32	1.91
31677676--31678406	243	3.0	244	98	0	1428	35	11	19	32	1.88
31685962--31686009	12	3.9	12	78	13	53	50	6	0	43	1.27
31685962--31686009	18	2.6	18	80	9	53	50	6	0	43	1.27
31691255--31691307	26	2.0	26	100	0	106	41	15	11	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31695255--31695318	21	3.0	21	75	11	67	26	17	18	37	1.93
31695877--31695945	33	2.1	33	100	0	138	20	20	26	33	1.97
31698878--31698974	7	14.0	7	74	10	83	49	9	1	40	1.42
31698898--31698972	21	3.6	21	88	0	105	50	8	1	40	1.40
31699686--31699752	34	1.9	35	93	3	118	32	8	11	46	1.72
31700769--31700798	9	3.3	9	90	0	51	30	0	13	56	1.37
31704995--31705051	29	2.0	29	89	0	87	66	3	0	29	1.08
31708583--31708612	14	2.1	14	93	0	51	43	0	10	46	1.37
31716015--31716046	16	1.9	17	93	6	57	50	0	9	40	1.35
31716310--31716348	12	3.3	12	83	16	55	41	0	0	58	0.98
31721344--31721374	15	2.1	15	93	0	53	70	19	6	3	1.22
31725238--31725294	17	3.4	17	72	18	55	43	0	0	56	0.99
31725228--31725293	34	1.9	34	84	6	89	40	0	0	59	0.98
31725455--31725500	24	2.0	24	95	4	85	41	26	4	28	1.74
31728075--31728106	6	5.3	6	100	0	64	50	0	15	34	1.45
31728066--31728112	18	2.6	18	86	0	67	51	2	10	36	1.49
31729119--31729161	16	2.6	16	81	7	50	72	2	0	25	0.97
31730658--31730694	16	2.4	16	86	8	51	48	8	8	35	1.62
31732728--31732792	27	2.4	27	90	10	98	23	27	21	27	1.99
31732956--31733287	102	3.1	102	86	8	402	54	16	1	26	1.52
31733350--31733467	38	3.2	37	64	19	93	55	15	0	28	1.46
31733364--31733474	31	3.3	31	64	22	78	57	14	0	27	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31733345--31733481	72	1.9	72	96	0	256	54	15	0	29	1.47
31733345--31733452	34	3.1	34	65	13	83	52	16	0	29	1.50
31733371--31733485	38	3.1	38	68	14	123	55	15	0	28	1.41
31733484--31733541	27	2.1	27	84	6	73	32	32	20	13	1.92
31734123--31734178	24	2.4	22	80	11	58	35	1	1	60	1.17
31734130--31734185	24	2.3	25	84	3	78	37	1	1	58	1.19
31734344--31734380	7	5.3	7	100	0	74	0	59	13	27	1.35
31734681--31734793	57	2.0	57	98	0	217	36	0	10	53	1.36
31734814--31734978	72	2.3	72	94	0	285	30	0	16	52	1.48
31734871--31734978	34	3.1	33	67	15	90	28	0	16	54	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199