genome.fa.s18.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  87  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30573187--30573229	19	2.2	20	84	12	54	0	20	2	76	0.89
30573178--30573246	15	4.7	14	77	13	68	2	18	1	76	0.98
30573168--30573246	28	2.7	29	80	9	79	5	17	1	75	1.04
30575139--30575402	43	6.2	43	84	4	266	31	19	22	26	1.98
30575139--30575358	84	2.6	86	83	3	266	31	18	23	25	1.97
30575247--30575419	42	4.1	43	87	3	163	30	21	20	27	1.98
30575850--30575898	21	2.3	21	85	0	62	4	38	18	38	1.70
30575867--30575906	21	1.9	21	94	0	71	2	37	20	40	1.66
30575862--30575915	21	2.6	21	82	5	65	3	40	20	35	1.70
30581405--30581509	25	4.2	25	78	11	115	34	2	19	43	1.65
30581422--30582049	9	71.1	9	67	20	269	32	2	19	45	1.63
30581405--30581509	51	2.1	50	85	1	138	34	2	19	43	1.65
30581443--30581736	59	4.9	58	82	8	252	32	2	19	45	1.62
30581422--30581768	43	8.0	44	73	12	240	31	2	19	46	1.62
30581583--30581639	19	3.1	19	82	12	57	31	0	19	49	1.49
30581882--30581906	13	1.9	13	100	0	50	36	0	24	40	1.55
30581858--30581908	22	2.3	22	83	6	59	35	1	21	41	1.65
30581880--30581958	16	5.0	16	73	13	74	31	1	18	48	1.57
30581967--30582037	20	3.3	22	82	11	85	35	0	19	45	1.51
30584102--30584140	10	3.9	10	93	0	69	41	15	0	43	1.46
30584102--30584139	20	1.9	20	100	0	76	42	13	0	44	1.43
30584106--30584145	20	2.0	20	85	4	55	47	15	0	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30584423--30584465	18	2.4	19	80	11	54	34	41	0	23	1.55
30586259--30586326	14	4.9	14	71	16	52	41	33	0	25	1.56
30586811--30587090	41	6.8	41	81	4	307	35	23	25	15	1.94
30586850--30587089	82	2.9	81	91	2	381	35	24	25	15	1.94
30587169--30587244	40	1.9	40	89	5	118	15	28	26	28	1.96
30587147--30587262	40	2.9	39	78	3	117	17	25	23	34	1.96
30590322--30590361	17	2.3	18	87	12	57	45	0	0	55	0.99
30590404--30590575	87	2.0	88	83	4	222	36	7	12	43	1.70
30592969--30593024	13	4.3	13	73	8	51	33	3	0	62	1.12
30600583--30600739	73	2.2	71	81	6	183	38	21	17	22	1.93
30601277--30601323	14	3.4	14	82	5	51	17	0	38	44	1.48
30601372--30601445	7	10.4	7	75	13	53	18	1	29	50	1.56
30601371--30601453	21	4.0	21	78	9	71	19	1	30	49	1.56
30601394--30601467	7	10.7	7	82	2	69	21	0	31	47	1.51
30601682--30601736	27	2.1	25	81	18	60	45	5	1	47	1.36
30601935--30602409	148	3.2	146	79	6	492	27	16	20	35	1.95
30602687--30602722	6	6.0	6	86	0	54	16	50	16	16	1.79
30602930--30602965	14	2.6	14	90	0	63	22	8	13	55	1.65
30602992--30603043	23	2.4	21	87	9	70	23	11	23	42	1.86
30603990--30604095	9	12.4	9	75	13	82	46	17	0	34	1.55
30603994--30604093	16	6.0	16	75	12	69	47	17	1	35	1.54
30603979--30604066	25	3.5	25	88	0	122	48	18	1	31	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30609921--30610125	43	4.8	43	93	1	331	24	20	31	23	1.98
30609921--30610125	85	2.4	85	92	1	329	24	20	31	23	1.98
30611284--30611335	26	2.0	26	88	0	77	59	32	0	7	1.26
30612561--30612596	19	1.9	18	88	5	54	22	8	0	69	1.15
30612708--30612781	29	2.6	28	79	12	71	24	6	6	62	1.45
30614133--30614159	11	2.5	11	100	0	54	81	0	0	18	0.69
30615359--30615662	43	7.1	43	89	0	385	29	25	22	23	1.99
30615999--30616038	21	1.9	21	84	0	53	5	37	20	37	1.74
30615999--30616191	87	2.2	87	86	5	257	11	29	19	40	1.86
30623545--30623587	19	2.3	18	84	15	52	20	23	13	41	1.88
30625632--30625682	6	8.0	6	87	12	75	80	1	17	0	0.81
30627115--30627291	27	6.5	27	82	6	196	26	15	28	29	1.96
30627116--30627271	82	1.9	81	87	6	226	26	15	28	29	1.96
30627112--30627291	82	2.2	81	82	4	220	26	15	27	30	1.96
30630859--30631616	50	15.3	49	74	11	580	31	21	19	26	1.98
30630797--30631616	100	8.2	100	89	3	1160	31	21	20	26	1.98
30631868--30632718	44	19.5	45	73	12	363	30	20	22	27	1.98
30632035--30632415	87	4.4	85	71	11	193	29	20	23	26	1.99
30631868--30632371	217	2.3	218	94	0	875	28	19	23	27	1.98
30632443--30632629	85	2.2	85	89	1	277	28	20	22	27	1.99
30632522--30632857	175	1.9	173	80	7	394	29	19	24	27	1.98
30637052--30637391	9	39.8	9	71	14	247	31	2	20	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30637043--30637142	51	2.0	50	86	2	137	34	3	20	43	1.67
30637079--30637323	59	4.1	58	83	9	228	31	3	20	45	1.67
30637219--30637257	19	2.1	19	85	9	53	30	0	17	51	1.46
30637041--30637391	25	13.7	26	74	13	243	31	2	19	46	1.64
30637361--30637455	39	2.5	39	77	3	104	36	2	15	45	1.59
30637556--30637602	20	2.3	20	82	10	60	55	2	2	40	1.24
30639529--30639555	11	2.5	11	100	0	54	55	0	18	25	1.43
30640435--30640486	27	1.9	27	84	0	68	48	9	0	42	1.36
30640554--30640590	10	3.9	10	79	13	51	43	13	0	43	1.44
30641872--30641939	15	4.9	14	71	16	52	41	35	0	23	1.55
30641875--30641912	15	2.5	15	86	0	58	36	42	0	21	1.53
30642432--30642528	41	2.4	41	80	3	115	31	21	27	18	1.97
30642538--30642651	41	2.8	40	83	2	138	35	22	23	17	1.95
30642697--30642824	40	3.2	39	73	6	114	17	25	21	35	1.95
30648430--30648569	43	3.3	43	86	0	208	22	27	20	28	1.99
30648430--30648597	43	3.9	43	84	0	165	19	26	22	32	1.97
30648952--30649004	28	1.9	27	96	0	88	54	11	13	20	1.69
30649076--30649137	25	2.4	26	89	2	90	40	1	14	43	1.55
30649076--30649147	17	4.2	17	72	13	58	40	1	13	44	1.53
30649240--30649299	17	3.5	17	72	17	52	38	0	18	43	1.50
30649243--30649325	34	2.3	36	85	8	107	36	0	18	45	1.49
30649258--30649421	46	3.5	46	70	14	134	33	0	18	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30649690--30649720	8	3.9	8	95	0	53	48	25	22	3	1.66
30652228--30652258	16	1.9	16	93	0	53	22	12	45	19	1.84
30652447--30653135	199	3.5	199	88	0	1004	28	24	16	30	1.97
30653284--30653382	47	2.1	48	84	1	128	44	0	10	45	1.37
30653378--30653413	12	3.1	12	92	4	56	13	2	0	83	0.76
30653377--30653413	19	2.0	18	89	5	56	13	2	0	83	0.74
30653407--30653455	9	5.4	9	88	9	73	30	8	0	61	1.25
30653405--30653460	17	3.2	18	87	10	80	33	7	0	58	1.25
30653417--30653460	8	5.2	8	86	13	54	34	9	0	56	1.31
30653449--30653503	21	2.7	20	71	23	51	41	5	3	49	1.43
30653552--30653793	97	2.6	91	87	5	335	43	25	1	29	1.64
30653618--30653892	97	2.8	99	83	7	360	42	26	1	29	1.64
30653937--30653961	12	2.1	12	100	0	50	32	52	0	16	1.44
30653938--30653980	14	3.2	13	84	12	52	37	41	0	20	1.53
30654003--30654035	14	2.3	15	94	5	59	36	33	0	30	1.58
30654590--30654927	114	3.0	114	86	1	455	28	25	21	24	1.99
30655786--30655927	25	5.7	25	77	5	126	32	15	28	23	1.95
30660260--30660307	17	3.1	17	75	19	52	72	0	4	22	1.01
30660255--30660313	13	4.3	13	71	24	50	72	0	3	23	0.99
30660255--30660316	22	2.9	22	75	13	67	72	0	3	24	0.99
30668334--30668933	45	13.7	45	73	14	287	26	23	21	29	1.99
30668242--30669072	218	3.8	218	93	0	1385	27	22	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30668687--30668794	40	2.5	44	82	7	134	27	24	23	25	2.00
30668249--30669066	44	18.8	44	72	12	446	27	22	20	29	1.99
30682304--30682369	35	1.9	35	84	9	91	15	15	21	48	1.81
30684578--30684619	20	2.2	20	87	8	61	52	7	2	38	1.42
30689819--30689872	21	2.5	22	84	3	65	61	7	1	29	1.34
30690344--30690378	4	8.8	4	100	0	70	51	22	0	25	1.48
30698125--30698333	90	2.3	89	80	5	224	29	6	14	49	1.68
30698735--30698821	42	2.1	42	91	0	138	25	20	31	22	1.98
30700011--30700042	15	2.1	15	100	0	64	34	6	12	46	1.67
30700118--30700158	19	2.2	20	82	13	59	41	4	2	51	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199