genome.fa.s18.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  110  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36527035--36527104	15	4.6	15	72	19	56	50	1	1	47	1.19
36529445--36529481	3	12.0	3	94	5	65	32	0	0	67	0.91
36531915--36532047	43	3.1	43	85	2	151	24	18	24	31	1.98
36531940--36532072	43	3.1	42	85	4	151	24	19	21	33	1.97
36532423--36532462	21	1.9	21	89	0	62	2	50	15	32	1.57
36535785--36535838	28	1.9	28	100	0	108	31	11	14	42	1.81
36537937--36538189	9	27.8	9	78	2	263	32	1	16	49	1.57
36537937--36538333	27	14.3	27	76	15	348	32	2	15	50	1.55
36538226--36538296	12	6.4	12	69	18	55	35	0	11	53	1.37
36538217--36538285	20	3.5	20	84	11	88	34	0	10	55	1.34
36538211--36538306	32	3.0	31	78	13	106	33	0	12	54	1.38
36538263--36538431	22	7.6	23	67	20	74	35	2	12	49	1.53
36538285--36538347	9	6.7	9	75	10	63	34	4	15	44	1.68
36538260--36538459	107	1.8	107	88	6	301	36	3	11	48	1.57
36538361--36538396	12	3.0	12	95	0	63	27	0	8	63	1.23
36538495--36538640	62	2.4	61	78	4	159	49	9	5	35	1.59
36538576--36538613	16	2.4	16	91	4	60	52	5	0	42	1.24
36538606--36538655	17	3.2	17	81	18	72	52	4	6	38	1.45
36539635--36539689	30	1.9	29	82	10	69	58	9	3	29	1.46
36542091--36542158	36	1.9	35	84	3	91	36	44	1	17	1.58
36542096--36542165	14	5.0	14	69	10	54	37	44	1	17	1.57
36542096--36542165	28	2.5	28	80	11	72	37	44	1	17	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36542326--36542388	15	4.4	15	76	11	69	30	49	1	19	1.58
36542352--36542387	7	5.0	7	86	6	54	30	44	0	25	1.54
36542318--36542418	42	2.4	42	80	3	114	35	41	0	21	1.60
36542041--36542472	233	1.9	232	85	5	613	40	32	3	23	1.71
36543072--36543357	114	2.5	113	77	5	279	32	23	16	27	1.96
36543907--36543954	21	2.3	21	85	7	62	0	41	20	37	1.53
36549519--36549572	25	2.2	25	90	6	83	44	3	27	24	1.70
36551608--36551701	46	2.0	46	97	0	179	18	27	7	46	1.75
36552074--36552106	17	1.9	17	100	0	66	12	30	12	45	1.78
36558004--36558063	3	20.7	3	75	13	54	66	3	1	28	1.17
36559649--36559928	44	6.4	43	90	2	368	26	24	21	26	2.00
36561200--36561237	15	2.6	15	95	4	69	15	15	0	68	1.22
36561200--36561237	7	5.3	7	93	6	67	15	15	0	68	1.22
36566873--36566942	22	3.2	21	78	15	63	64	4	2	28	1.27
36566879--36566942	28	2.2	31	81	13	75	65	3	3	28	1.23
36575604--36575643	17	2.4	17	87	8	55	22	0	20	57	1.41
36576123--36576178	26	2.1	27	80	9	62	26	8	7	57	1.55
36576255--36576297	22	2.0	22	90	0	68	9	13	27	48	1.73
36576369--36576588	82	2.6	82	88	5	307	30	21	21	26	1.98
36576389--36576678	43	6.9	42	87	6	344	30	21	22	25	1.98
36576389--36576677	85	3.5	81	83	8	343	30	21	22	25	1.99
36577112--36577158	12	4.2	12	73	15	55	0	40	21	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36577123--36577212	21	4.3	21	85	0	108	4	40	18	36	1.71
36582667--36582917	9	29.8	9	71	12	140	29	3	20	45	1.68
36582656--36582859	25	8.1	25	78	3	176	30	3	21	44	1.70
36582670--36582757	34	2.5	35	78	10	92	28	3	23	44	1.70
36582656--36582859	50	4.0	50	82	1	210	30	3	21	44	1.70
36582728--36582916	41	4.8	41	73	15	155	29	3	20	47	1.65
36582727--36582803	16	4.7	16	71	17	68	27	5	20	46	1.72
36582844--36582909	25	2.6	25	85	0	87	30	1	15	53	1.51
36583006--36583060	24	2.2	26	87	6	78	23	0	18	58	1.39
36582852--36583062	94	2.3	93	75	12	211	27	3	16	52	1.59
36583232--36583264	15	2.2	15	94	0	57	54	3	3	39	1.31
36583279--36583340	21	3.0	21	70	23	51	48	4	4	41	1.46
36583409--36583441	15	2.2	15	94	0	57	54	3	3	39	1.31
36583123--36583506	177	2.2	175	98	0	732	49	5	4	40	1.45
36585461--36585510	23	2.2	23	85	7	66	38	4	38	20	1.71
36586044--36586096	22	2.5	22	96	3	99	37	26	3	32	1.74
36586057--36586133	15	5.3	14	72	7	55	40	29	1	28	1.65
36586060--36586138	29	2.7	30	82	7	92	39	29	2	29	1.70
36586699--36587496	259	3.0	265	90	4	1260	29	19	18	32	1.96
36587544--36587791	113	2.2	114	83	2	302	29	20	21	29	1.98
36589203--36589256	22	2.5	21	77	11	56	44	1	1	51	1.22
36590723--36590767	22	2.1	22	87	4	65	13	13	15	57	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36590734--36590777	22	2.0	22	86	0	61	18	18	11	52	1.74
36590975--36591014	19	2.2	19	86	8	57	52	0	0	47	1.00
36591463--36591515	24	2.4	21	84	9	61	56	0	1	41	1.10
36591871--36591931	3	20.3	3	100	0	122	0	32	0	67	0.91
36594577--36594611	13	2.7	13	86	0	52	40	2	0	57	1.14
36596851--36596938	40	2.2	41	83	4	115	29	2	11	56	1.46
36596922--36597053	34	3.8	34	75	8	113	18	9	11	59	1.58
36596988--36597053	34	1.9	34	93	0	114	18	9	9	63	1.49
36600565--36600605	20	2.1	20	86	13	59	56	2	9	31	1.45
36602845--36602884	20	2.0	21	90	5	64	37	0	2	60	1.11
36607801--36607863	28	2.2	28	88	0	90	36	17	26	19	1.94
36610988--36611015	14	2.0	14	100	0	56	57	7	14	21	1.61
36613638--36613777	70	2.0	71	93	6	241	38	1	7	52	1.40
36613696--36614040	90	3.9	90	94	1	597	36	1	6	55	1.35
36615414--36615589	41	4.3	41	80	4	212	33	23	16	26	1.96
36615414--36615588	81	2.1	82	87	3	246	33	24	16	26	1.95
36615867--36616010	76	1.9	75	81	5	173	45	13	4	36	1.63
36618843--36618981	41	3.4	41	91	1	217	40	12	23	24	1.88
36623989--36624127	41	3.4	41	91	1	217	40	12	22	24	1.89
36629180--36629237	31	1.9	30	85	3	80	8	18	5	67	1.37
36629978--36630011	17	1.9	18	88	5	52	20	5	11	61	1.50
36635221--36635261	16	2.6	16	81	11	50	70	0	17	12	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36637154--36637209	24	2.3	24	93	0	103	32	10	26	30	1.90
36637539--36638666	44	24.8	45	71	11	504	31	18	21	28	1.97
36637537--36638108	178	3.2	178	85	3	690	31	18	22	27	1.97
36637715--36638154	133	3.3	132	85	3	499	32	17	21	28	1.96
36638396--36638819	194	2.2	194	88	2	629	30	19	22	27	1.98
36641621--36641663	18	2.3	18	84	8	50	55	2	4	37	1.33
36642061--36642102	13	3.3	13	80	6	50	47	0	0	52	1.00
36642078--36642116	17	2.4	17	86	4	53	61	0	0	38	0.96
36645109--36645156	21	2.2	22	78	14	55	50	4	4	41	1.41
36659009--36659145	56	2.4	56	79	10	163	45	8	10	36	1.68
36659148--36659922	57	13.6	57	97	0	1437	24	0	24	50	1.50
36659871--36659929	18	3.7	18	64	29	51	22	0	23	54	1.45
36659970--36660018	25	1.9	25	87	4	71	38	16	4	40	1.67
36660132--36660184	24	2.2	24	86	0	70	1	26	30	41	1.66
36660439--36660484	18	2.6	18	82	0	56	39	8	30	21	1.84
36661129--36661153	7	3.6	7	100	0	50	60	12	0	28	1.32
36662233--36662296	29	2.2	29	94	2	110	64	0	0	35	0.94
36662301--36662353	22	2.4	22	100	0	106	41	0	32	26	1.56
36669888--36669935	24	2.0	23	84	4	60	35	0	12	52	1.40
36680269--36680459	68	2.8	68	83	0	247	25	22	16	35	1.95
36685050--36685098	19	2.5	19	86	3	62	38	0	8	53	1.31
36689586--36689639	10	5.4	10	88	6	83	72	0	0	27	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36689586--36689641	19	2.9	19	94	2	94	69	0	0	30	0.89
36694547--36694671	50	2.4	52	84	4	155	24	25	13	36	1.92
36696048--36696075	14	2.0	14	100	0	56	35	0	14	50	1.43
36708614--36708655	16	2.7	15	85	7	57	45	2	0	52	1.13
36724255--36724306	25	2.1	25	82	7	61	32	25	26	15	1.95
36728507--36728565	19	3.2	17	79	20	57	66	5	0	28	1.13
36740597--36740626	3	10.0	3	100	0	60	66	0	33	0	0.92
36747442--36747466	13	1.9	13	100	0	50	48	20	0	32	1.50
36748911--36749061	41	3.7	41	80	3	162	24	27	19	28	1.98
36756650--36756757	40	2.6	41	88	2	155	22	30	19	27	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199