genome.fa.s18.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  167  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54262810--54263308	142	3.5	142	95	0	863	33	17	21	27	1.96
54263171--54263269	44	2.2	44	82	3	119	32	19	20	28	1.97
54263660--54263730	28	2.6	27	88	2	97	39	38	4	18	1.70
54265025--54265067	20	2.2	20	87	4	61	34	4	6	53	1.49
54265029--54265075	19	2.4	19	83	13	60	36	4	6	53	1.46
54265148--54265185	14	2.4	16	83	16	53	28	7	2	60	1.38
54266824--54266857	9	3.9	9	84	7	52	44	0	2	52	1.16
54270794--54270833	8	4.9	9	77	22	52	60	7	0	32	1.25
54270794--54270833	16	2.5	16	100	0	80	60	7	0	32	1.25
54271437--54271497	26	2.3	26	78	18	72	40	4	3	50	1.40
54271455--54271502	26	1.9	26	87	8	73	41	4	6	47	1.48
54272018--54272067	15	3.1	17	77	16	52	44	4	8	44	1.52
54272186--54272241	13	4.3	13	75	8	60	33	0	0	66	0.92
54272211--54272241	14	2.2	14	94	0	53	32	0	0	67	0.91
54272716--54275259	597	4.3	597	96	0	4664	33	16	16	32	1.92
54279981--54280043	20	3.3	20	66	20	62	58	1	9	30	1.39
54279976--54280046	37	1.9	37	100	0	142	61	1	8	28	1.33
54281508--54281643	68	2.0	68	92	0	227	38	19	13	28	1.90
54282074--54282107	17	1.9	18	88	5	52	44	0	5	50	1.26
54282646--54282698	26	2.0	26	100	0	106	32	22	3	41	1.72
54284496--54284548	23	2.3	24	77	9	65	58	3	3	33	1.34
54284962--54285130	24	7.3	23	76	7	137	56	4	5	33	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54284984--54285124	46	3.0	45	79	6	129	56	4	5	33	1.42
54285004--54285135	70	1.9	69	81	6	158	54	3	6	35	1.42
54285070--54285180	24	4.7	24	68	17	63	54	2	5	36	1.37
54288871--54288901	15	2.1	15	93	0	53	64	6	0	29	1.18
54289094--54289118	8	3.1	8	100	0	50	12	52	12	24	1.72
54289601--54289638	11	3.2	12	92	7	60	0	52	0	47	1.00
54290103--54290172	3	23.3	3	74	11	63	31	1	5	61	1.28
54290114--54290175	23	2.8	22	87	4	81	32	1	8	58	1.37
54290138--54290183	23	2.0	23	82	0	56	30	4	10	54	1.55
54301783--54302306	44	11.5	46	72	15	245	31	18	21	27	1.97
54301777--54302033	131	2.0	132	86	3	367	30	19	22	27	1.98
54301912--54302388	234	2.1	231	88	3	699	32	19	20	27	1.97
54302142--54302355	46	4.8	44	83	5	123	33	17	20	28	1.96
54302810--54302836	8	3.4	8	100	0	54	11	55	11	22	1.66
54303787--54303843	9	6.4	9	80	10	55	31	1	8	57	1.39
54303760--54303839	28	2.9	25	81	14	70	32	2	5	60	1.32
54303805--54303856	20	2.6	21	87	6	72	34	1	7	55	1.39
54304184--54304232	25	2.0	25	84	8	64	38	12	6	42	1.67
54306268--54306316	22	2.4	19	80	16	53	10	22	53	14	1.71
54307286--54307355	16	4.4	16	88	0	104	32	1	35	30	1.67
54307286--54307355	32	2.2	32	94	0	122	32	1	35	30	1.67
54307334--54307428	45	2.1	44	86	1	127	33	5	26	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54307672--54307714	15	2.9	15	86	6	61	51	2	0	46	1.13
54307564--54308005	114	4.0	116	86	9	592	50	4	2	42	1.34
54307803--54307837	13	2.6	14	86	9	54	57	0	0	42	0.99
54307911--54307956	11	4.1	11	81	13	58	56	0	0	43	0.99
54307902--54307949	24	2.0	24	88	8	71	60	0	0	39	0.97
54308019--54308225	91	2.3	91	88	3	301	46	3	3	45	1.39
54311335--54311374	19	2.1	19	100	0	80	40	0	20	40	1.52
54311311--54311454	43	3.0	48	76	15	190	48	2	15	33	1.57
54311754--54311778	13	1.9	13	100	0	50	20	16	8	56	1.65
54313436--54313466	7	4.3	7	95	4	53	70	25	0	3	1.02
54323032--54323074	9	4.7	9	80	5	50	34	9	0	55	1.32
54323031--54323127	44	2.2	46	77	7	110	37	6	0	56	1.24
54330155--54330181	12	2.2	12	100	0	54	51	0	0	48	1.00
54333274--54333336	3	21.3	3	87	9	94	31	1	1	65	1.12
54334538--54334592	20	2.8	19	81	13	60	67	0	5	27	1.12
54339298--54339348	20	2.6	20	78	9	52	66	0	7	25	1.18
54345480--54345544	34	1.9	34	87	0	94	32	23	15	29	1.95
54345568--54345674	45	2.4	45	80	13	121	42	15	12	29	1.84
54349819--54349868	17	3.1	17	80	11	52	52	0	4	44	1.20
54354485--54354707	119	1.9	119	93	0	383	25	12	26	35	1.91
54360736--54360784	19	2.5	19	96	3	89	16	4	6	73	1.19
54361139--54361360	7	31.0	7	73	11	83	41	36	1	21	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54361222--54361365	29	5.0	29	70	2	85	42	35	0	21	1.58
54361264--54361311	22	2.2	22	88	0	69	43	35	0	20	1.52
54361809--54362033	106	2.1	107	87	1	319	31	22	18	28	1.97
54361968--54362092	40	3.1	40	78	6	146	28	20	19	31	1.97
54366725--54366763	16	2.5	15	84	12	51	41	0	0	58	0.98
54366730--54366975	91	2.7	91	96	0	440	45	3	3	47	1.35
54366787--54366928	44	3.1	47	69	18	136	43	3	3	49	1.37
54367091--54367120	16	1.9	15	93	6	51	40	0	10	50	1.36
54366991--54367526	120	4.5	120	92	1	862	41	2	5	49	1.40
54367112--54367146	18	2.0	17	88	5	52	45	0	0	54	0.99
54367245--54367291	16	3.0	16	78	12	53	46	0	2	51	1.13
54367241--54367291	15	3.5	15	82	12	54	47	0	1	50	1.12
54366991--54367526	238	2.2	240	92	1	898	41	2	5	49	1.40
54367457--54367504	18	2.8	18	74	22	50	43	0	0	56	0.99
54367457--54367524	16	4.2	16	74	20	54	44	0	1	54	1.09
54367474--54367515	15	2.9	15	82	10	52	47	0	0	52	1.00
54367694--54367728	16	2.2	16	100	0	70	20	34	5	40	1.76
54367655--54367784	56	2.3	56	89	3	201	30	31	4	33	1.78
54367750--54367803	16	3.4	16	89	0	81	25	35	3	35	1.74
54368945--54368997	18	2.9	17	74	15	52	56	1	3	37	1.28
54369187--54369229	21	2.2	19	87	8	59	51	2	2	44	1.27
54371003--54371052	7	7.1	7	100	0	100	30	0	14	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54372554--54372695	71	2.0	71	95	0	257	33	18	19	28	1.96
54375091--54375245	41	3.8	41	79	10	138	27	20	25	27	1.99
54376938--54376992	26	2.1	26	86	0	74	16	49	29	5	1.68
54380826--54380859	9	3.9	9	84	7	52	44	0	2	52	1.16
54380810--54380854	18	2.4	18	88	3	63	40	2	6	51	1.41
54384705--54384776	10	7.3	10	78	7	58	36	5	0	58	1.22
54384705--54384775	20	3.6	19	73	7	70	36	5	0	57	1.22
54388794--54388864	31	2.3	31	100	0	142	43	7	16	32	1.75
54391123--54391151	14	2.1	14	100	0	58	27	6	6	58	1.50
54397124--54397152	14	2.0	15	93	6	51	62	0	3	34	1.12
54400841--54400909	36	1.9	35	82	2	84	30	20	20	28	1.97
54403680--54403719	20	2.0	20	90	0	62	12	27	10	50	1.72
54405823--54405867	23	2.0	22	82	4	54	60	4	2	33	1.29
54409412--54409439	11	2.5	11	100	0	56	21	0	17	60	1.36
54410862--54410913	19	2.7	19	76	11	52	63	1	5	28	1.28
54410918--54410960	17	2.6	16	82	13	52	46	4	25	23	1.71
54415965--54416007	17	2.6	16	82	13	52	46	2	25	25	1.65
54419124--54419208	44	1.9	44	97	0	161	28	21	23	27	1.99
54420911--54420954	15	2.9	15	82	3	52	47	2	2	47	1.27
54426203--54426252	17	3.1	17	80	11	52	52	0	4	44	1.20
54428481--54428524	22	2.0	21	82	4	52	9	18	22	50	1.75
54432147--54432195	15	3.3	15	88	5	82	48	6	0	44	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54432147--54432202	14	3.9	14	81	6	67	46	8	0	44	1.34
54432147--54432202	29	1.9	29	88	0	85	46	8	0	44	1.34
54439776--54440040	46	5.8	46	80	7	166	32	22	15	29	1.95
54439819--54440058	46	5.3	45	81	10	249	32	25	14	27	1.95
54452652--54452866	43	5.0	43	83	1	209	30	26	17	25	1.97
54454566--54454599	17	2.1	15	89	10	50	58	14	17	8	1.61
54456277--54456324	19	2.5	20	93	6	89	14	4	4	77	1.08
54456703--54456854	7	21.6	7	78	1	61	43	32	0	23	1.54
54456724--54456796	14	5.2	14	83	4	85	32	39	0	27	1.57
54456724--54456799	21	3.6	21	83	3	91	32	40	0	26	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199