genome.fa.s18.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  2  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401401--401457	22	2.5	23	75	11	64	40	0	33	26	1.56
420137--420209	31	2.4	31	83	2	94	41	17	9	31	1.82
420137--420231	31	3.1	31	80	3	93	43	17	8	30	1.79
423114--423148	15	2.3	15	90	0	52	0	25	0	74	0.82
423166--423204	21	2.0	20	90	10	62	5	15	7	71	1.26
423155--423195	16	2.6	15	85	11	55	4	14	9	70	1.30
423218--423280	7	8.6	7	77	19	58	53	1	1	42	1.19
423281--423305	7	3.6	7	100	0	50	12	12	12	64	1.51
424595--424628	18	2.0	16	88	11	50	26	2	0	70	1.01
424764--424806	19	2.3	19	84	8	52	34	2	4	58	1.32
440693--440720	12	2.3	12	100	0	56	42	10	14	32	1.80
441520--441552	9	3.9	9	88	11	52	78	0	9	12	0.95
443521--443551	15	2.1	15	93	0	53	16	3	0	80	0.83
445546--445590	19	2.4	19	85	7	56	26	20	8	44	1.80
448478--448509	14	2.4	13	94	5	55	65	0	21	12	1.25
449759--450522	89	8.6	89	91	1	1158	31	17	23	26	1.97
449767--450515	355	2.1	355	91	0	1185	31	17	23	26	1.97
452386--452414	12	2.3	13	94	5	51	31	13	0	55	1.39
452539--452574	18	1.9	18	88	5	54	13	2	0	83	0.76
454223--454288	30	2.2	30	91	0	105	22	22	16	37	1.93
458978--459021	16	2.8	15	80	10	52	77	0	22	0	0.77
458978--459022	15	2.9	15	84	12	56	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461181--461280	45	2.2	45	82	3	121	41	16	18	25	1.90
481886--481929	18	2.5	17	77	3	52	36	0	2	61	1.09
482657--482687	13	2.4	13	94	0	53	29	16	3	51	1.59
486861--486900	3	13.3	3	100	0	80	32	0	35	32	1.58
492130--492168	18	2.2	18	86	9	53	66	0	5	28	1.12
497624--497674	24	2.1	24	100	0	102	52	25	3	17	1.61
499263--499310	20	2.5	20	86	3	71	31	8	0	60	1.26
499390--499450	28	2.3	27	85	5	79	36	1	0	62	1.05
500293--500442	54	2.7	55	87	2	203	38	19	18	24	1.93
505162--505222	30	2.0	30	96	0	113	36	21	9	32	1.86
505273--505304	15	2.1	15	94	0	55	75	3	0	21	0.95
506241--506285	19	2.4	19	85	7	56	42	8	0	48	1.34
507560--507642	41	2.0	41	100	0	166	34	12	12	40	1.79
507560--507628	22	3.3	22	66	25	67	36	13	8	42	1.75
507634--507658	12	2.1	12	100	0	50	40	0	28	32	1.57
511103--511404	151	2.0	151	94	0	532	37	15	15	31	1.89
513549--513587	2	19.5	2	100	0	78	48	0	51	0	1.00
519970--520010	21	2.0	21	90	0	64	19	29	21	29	1.98
530635--530677	6	7.7	6	85	15	65	86	0	13	0	0.58
530641--530672	15	2.1	15	100	0	64	87	0	12	0	0.54
530635--530677	21	2.0	21	100	0	86	86	0	13	0	0.58
531284--531401	45	2.6	46	81	2	141	31	11	14	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
533855--533906	26	2.0	25	82	14	61	59	3	0	36	1.16
534136--534179	23	1.9	23	81	9	54	27	4	2	65	1.23
536148--536193	23	2.0	23	95	0	83	28	21	6	43	1.77
556496--556522	8	3.4	8	100	0	54	88	0	0	11	0.50
559502--559526	9	2.8	9	100	0	50	48	0	0	52	1.00
560913--560947	2	17.5	2	93	0	61	51	0	0	48	1.00
566530--566611	3	28.3	3	72	9	55	37	0	2	59	1.11
566522--566570	19	2.5	20	81	15	59	40	0	0	59	0.98
566737--566782	3	15.7	3	78	13	51	39	0	0	60	0.97
566736--566782	8	6.1	8	81	18	64	40	0	0	59	0.97
566745--566782	11	3.5	11	85	10	51	39	0	0	60	0.97
567169--567202	17	1.9	18	88	5	52	41	0	23	35	1.55
567599--567637	19	2.1	19	100	0	78	30	10	25	33	1.89
569544--569594	23	2.2	23	96	0	93	23	21	27	27	1.99
571660--571760	18	5.3	18	70	20	71	60	5	1	31	1.32
572937--572982	25	1.9	25	91	8	78	43	15	15	26	1.85
572978--573045	33	2.1	33	86	5	93	44	11	5	38	1.65
578196--578235	20	2.1	19	86	13	55	62	2	2	32	1.22
585991--586219	101	2.3	100	89	1	341	31	13	24	29	1.94
591797--591840	20	2.2	20	84	8	54	63	2	0	34	1.07
591785--591841	19	2.9	19	73	14	53	54	1	0	43	1.10
592221--592290	35	2.0	34	94	2	122	38	21	4	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602047--602212	89	1.8	91	81	12	209	38	9	15	36	1.80
602010--602233	88	2.5	83	73	16	191	40	8	13	37	1.76
602302--602350	23	2.1	24	88	3	73	57	16	4	22	1.56
604386--604430	21	2.1	21	91	0	72	55	2	2	40	1.24
643201--643228	6	4.7	6	100	0	56	35	28	0	35	1.58
647244--647295	23	2.3	23	86	6	70	42	7	13	36	1.73
648773--648865	39	2.5	37	80	7	98	27	29	22	20	1.98
649221--649286	3	22.0	3	90	0	105	62	3	0	34	1.11
649918--649945	9	3.1	9	100	0	56	10	35	0	53	1.36
649949--649974	11	2.4	11	100	0	52	0	42	7	50	1.31
654502--654553	23	2.3	23	90	6	79	42	9	13	34	1.77
666113--666401	112	2.6	112	78	6	307	30	20	23	25	1.98
666396--666712	114	2.8	114	81	5	331	31	20	23	24	1.98
666640--666788	76	1.9	77	85	4	203	32	20	22	25	1.98
666527--666903	191	2.0	190	83	3	481	32	20	23	24	1.98
666717--666971	115	2.2	114	83	4	325	31	18	23	25	1.97
667863--667903	14	2.7	15	85	7	57	19	0	39	41	1.52
670222--670270	21	2.3	21	89	6	73	36	18	42	2	1.62
670641--670820	42	4.2	43	77	2	157	31	20	20	28	1.97
672279--672371	5	18.8	5	82	8	111	41	1	1	55	1.14
672377--672422	24	1.9	24	86	8	67	73	0	26	0	0.83
672385--672424	20	2.0	20	90	0	62	70	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672718--672753	18	1.9	19	88	5	56	50	0	16	33	1.46
681234--681305	21	3.4	21	88	0	90	20	29	26	23	1.99
683225--683286	25	2.4	26	84	7	74	62	4	3	29	1.31
683615--683653	20	1.9	21	89	5	62	43	2	0	53	1.14
687955--688017	26	2.4	26	91	2	99	34	0	0	65	0.93
689597--689632	3	12.0	3	87	0	54	33	0	5	61	1.19
689597--689632	12	3.0	12	95	0	63	33	0	5	61	1.19
689773--689843	24	2.9	24	78	14	65	43	0	22	33	1.54
689987--690082	39	2.5	39	80	6	108	20	23	28	27	1.99
703972--703996	11	2.3	11	100	0	50	16	0	0	84	0.63
710516--710560	22	2.1	22	91	4	74	46	2	0	51	1.13
713501--713536	3	12.0	3	100	0	72	66	0	33	0	0.92
745014--745067	21	2.5	20	80	11	54	55	3	1	38	1.28
745050--745113	10	6.5	10	82	14	80	54	0	1	43	1.09
745028--745103	27	2.5	30	87	12	104	56	0	1	42	1.07
745050--745146	37	2.5	39	83	14	128	57	0	2	40	1.10
745058--745130	10	7.8	10	73	14	57	58	0	0	41	0.98
754039--754133	31	3.2	28	71	11	75	47	5	2	45	1.37
760003--760029	2	13.5	2	100	0	54	51	48	0	0	1.00
763841--763871	6	5.2	6	100	0	62	32	51	0	16	1.44
783292--783344	16	3.1	18	71	23	51	37	0	5	56	1.23
783472--783559	31	2.9	30	73	9	81	48	7	4	38	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
792568--792609	3	14.0	3	90	9	68	66	0	33	0	0.92
792741--792774	16	2.1	17	88	5	52	23	0	70	5	1.09
800050--800088	18	2.3	16	86	8	51	58	2	0	38	1.12
800050--800088	8	4.6	8	84	12	51	58	2	0	38	1.12
814438--814476	10	3.8	10	86	3	51	84	0	12	2	0.72
815941--815984	19	2.3	19	80	0	52	56	2	2	38	1.24
822340--822390	4	12.8	4	100	0	102	49	25	0	25	1.51
827799--827838	18	2.2	18	86	8	55	67	10	0	22	1.20
833964--834006	20	2.1	20	86	4	59	44	4	0	51	1.22
834011--834051	13	2.9	14	80	20	50	51	0	2	46	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199