genome.fa.s23.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  102  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29570786--29570828	21	2.0	21	86	0	59	51	2	13	32	1.54
29574122--29574212	40	2.2	42	84	7	114	50	7	5	36	1.54
29577846--29577963	43	2.7	43	78	7	123	24	20	17	37	1.94
29594336--29594522	62	3.0	62	81	1	205	23	26	24	25	2.00
29594366--29594542	62	2.9	62	80	3	178	23	27	25	23	2.00
29596037--29596072	16	2.2	16	90	0	54	16	13	22	47	1.82
29596309--29596342	17	2.1	17	94	5	61	38	0	0	61	0.96
29596799--29596836	19	2.0	20	84	5	51	63	5	0	31	1.17
29600201--29600296	50	2.0	50	83	4	124	28	22	27	21	1.99
29606433--29606509	23	3.3	23	88	1	118	22	20	24	32	1.98
29610375--29610561	43	4.4	42	78	11	186	34	27	15	21	1.94
29610377--29610602	85	2.7	85	84	4	280	34	27	15	21	1.94
29610576--29610628	26	2.0	26	96	0	97	28	33	20	16	1.95
29617940--29618151	43	5.0	41	77	11	205	36	25	16	21	1.94
29617940--29618167	85	2.7	85	86	2	307	35	27	15	21	1.94
29622332--29622446	50	2.3	50	83	5	135	26	23	30	20	1.98
29636901--29636934	16	2.1	16	88	0	50	67	2	20	8	1.31
29640006--29640464	201	2.3	202	92	0	749	32	21	13	32	1.92
29643162--29643242	26	3.1	26	87	0	117	37	24	18	19	1.94
29643406--29644032	27	23.4	27	79	4	558	18	17	21	42	1.89
29643409--29644032	107	5.8	106	80	4	520	18	17	20	42	1.89
29644281--29644322	20	2.2	19	86	4	57	16	42	21	19	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29651315--29651420	41	2.6	41	95	0	185	23	21	23	31	1.99
29659040--29659323	92	3.1	92	79	2	318	28	14	20	35	1.93
29663289--29663361	27	2.7	27	81	8	85	43	20	13	21	1.86
29663314--29663403	27	3.3	27	84	3	119	40	16	17	25	1.91
29667229--29667583	182	2.0	182	97	0	665	36	11	16	35	1.86
29673454--29673491	6	6.2	6	87	6	58	34	5	0	60	1.19
29673454--29673491	19	2.1	18	90	5	58	34	5	0	60	1.19
29679000--29679054	27	2.0	27	100	0	110	38	10	10	40	1.76
29681719--29681913	50	3.9	50	80	6	232	31	29	15	23	1.95
29681721--29681904	101	1.8	101	89	2	289	30	28	16	23	1.96
29684673--29684754	42	2.0	42	82	4	103	32	21	13	31	1.92
29687413--29687599	101	1.8	101	85	3	259	31	27	16	25	1.96
29696083--29696114	12	2.5	13	90	10	57	12	15	6	65	1.44
29697107--29697186	39	2.1	39	97	0	151	30	7	32	30	1.85
29700457--29700519	28	2.3	27	81	8	74	34	30	9	25	1.88
29702666--29702692	8	3.4	8	100	0	54	11	11	22	55	1.66
29703966--29704149	102	1.8	102	86	3	255	26	15	26	32	1.95
29703958--29704143	51	3.7	49	79	5	203	25	16	26	31	1.96
29704372--29704403	16	2.0	16	93	0	55	59	0	15	25	1.36
29712673--29712703	16	1.9	16	100	0	62	58	9	6	25	1.54
29715799--29716096	91	3.3	91	96	0	542	46	3	4	46	1.38
29715814--29716049	47	5.1	47	69	19	210	44	3	3	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29716123--29716431	59	5.2	58	65	20	197	43	2	5	48	1.41
29716112--29716520	120	3.4	119	95	2	705	43	2	5	48	1.39
29716353--29716387	18	2.0	17	88	5	52	45	0	0	54	0.99
29716477--29716518	15	2.9	15	82	10	52	47	0	0	52	1.00
29716707--29716739	16	2.1	16	94	0	57	21	33	6	39	1.78
29740782--29740853	30	2.4	30	83	0	81	22	22	12	43	1.86
29740838--29740917	30	2.7	30	78	0	88	22	20	12	45	1.84
29740897--29740969	29	2.5	30	86	6	105	24	27	12	35	1.91
29740957--29741030	29	2.5	29	84	2	94	22	28	8	40	1.83
29762020--29762058	20	1.9	21	89	5	62	30	2	15	51	1.57
29765658--29765800	28	5.1	28	82	4	135	27	24	11	36	1.90
29768913--29768961	22	2.3	21	82	10	55	44	14	0	40	1.45
29775496--29775593	24	3.9	24	78	10	88	46	11	1	40	1.46
29775520--29775602	28	3.1	27	77	13	82	44	9	2	43	1.50
29775459--29775602	52	2.7	53	80	5	168	42	11	3	42	1.58
29775519--29775603	24	3.4	24	69	12	62	43	9	2	44	1.49
29780962--29781020	22	2.6	22	86	7	75	35	6	1	55	1.36
29786131--29786187	9	5.6	10	76	19	64	80	7	3	8	1.00
29786133--29786175	19	2.3	19	92	8	70	86	4	2	6	0.79
29786133--29786175	10	4.6	9	88	5	59	86	4	2	6	0.79
29788393--29788620	88	2.6	88	81	4	257	26	24	27	21	2.00
29788406--29788533	43	3.0	43	70	2	130	23	23	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29788623--29789080	131	3.5	131	91	1	704	31	20	23	24	1.98
29789278--29789435	50	3.2	50	75	7	167	34	22	18	24	1.97
29789278--29789468	100	1.9	100	90	0	301	34	22	18	24	1.97
29789299--29789468	50	3.4	50	77	3	189	35	21	18	24	1.96
29790077--29790112	11	3.4	11	96	3	65	13	0	0	86	0.58
29790078--29790113	5	7.0	5	87	6	54	16	0	0	83	0.65
29790943--29791001	22	2.6	22	86	7	75	35	6	1	55	1.36
29795008--29795052	20	2.3	19	88	11	72	51	31	15	2	1.56
29815745--29815788	15	3.1	15	77	12	56	25	9	4	61	1.45
29818590--29818650	24	2.5	25	81	2	70	26	21	24	27	1.99
29818633--29818692	25	2.4	25	82	0	75	33	20	21	25	1.97
29819523--29819552	11	2.7	11	94	0	51	20	3	13	63	1.43
29821762--29821793	8	4.0	8	100	0	64	37	25	0	37	1.56
29822208--29822241	16	2.1	17	94	5	61	47	17	0	35	1.48
29822967--29823486	258	2.0	260	90	1	830	38	16	16	28	1.90
29823574--29823617	5	8.8	5	94	0	79	61	15	0	22	1.34
29823755--29823835	27	3.0	27	85	5	101	54	12	11	22	1.69
29824868--29824901	10	3.4	10	91	0	50	41	29	0	29	1.57
29824861--29824904	15	2.9	15	86	0	52	36	29	0	34	1.58
29827857--29827895	18	2.2	18	86	4	53	64	7	12	15	1.49
29835332--29835377	16	2.8	16	83	3	56	60	2	2	34	1.21
29835592--29835636	23	2.0	23	81	0	54	62	15	0	22	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29835843--29835934	19	4.8	19	90	0	148	39	16	6	38	1.74
29835843--29835934	38	2.4	38	94	0	166	39	16	6	38	1.74
29836625--29836736	44	2.5	44	79	11	122	30	17	18	33	1.95
29836577--29836967	217	1.8	216	91	1	649	27	22	20	29	1.98
29837316--29837437	44	2.8	43	87	5	156	27	27	18	27	1.98
29837448--29838102	88	7.4	88	89	0	950	21	24	26	27	1.99
29837454--29838009	44	12.6	44	61	5	154	21	24	26	27	1.99
29837893--29838035	44	3.2	45	65	7	130	19	25	26	27	1.99
29839323--29839357	2	17.5	2	100	0	70	0	48	0	51	1.00
29840304--29840373	26	2.7	25	80	4	68	58	4	12	24	1.52
29845133--29845243	19	5.8	19	94	0	195	36	16	9	36	1.82
29845110--29845243	38	3.4	38	91	4	187	38	16	8	36	1.80
29849070--29849104	11	3.2	11	87	0	52	28	25	17	28	1.97
29856976--29857028	25	2.1	25	96	0	97	32	11	13	43	1.79
29866569--29866629	24	2.6	24	92	2	97	55	0	1	42	1.09
29868693--29868759	27	2.5	27	87	0	98	22	31	29	16	1.96
29869029--29869114	40	2.3	36	80	13	93	32	5	9	52	1.57
29871416--29871836	159	2.7	154	74	14	437	31	12	7	49	1.67
29871544--29872412	286	3.0	286	94	0	1513	31	11	6	50	1.63
29872841--29872894	4	14.0	4	78	18	53	0	29	0	70	0.88
29872807--29872894	28	3.1	28	85	4	106	1	29	0	69	0.96
29872810--29872894	18	4.7	18	72	18	70	1	29	0	69	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29872816--29872905	28	3.1	28	85	3	81	1	31	0	67	0.98
29872847--29872910	14	4.8	13	73	22	53	0	35	0	64	0.94
29875403--29875500	39	2.5	38	78	6	97	37	15	14	32	1.87
29875806--29875834	15	1.9	15	100	0	58	41	27	0	31	1.56
29889575--29889706	44	3.0	45	75	10	128	34	18	20	25	1.96
29889575--29890699	89	12.4	88	69	10	495	32	17	22	27	1.96
29889776--29890278	139	3.7	139	82	4	576	31	17	22	28	1.96
29889944--29890124	95	1.9	95	81	4	222	33	17	22	26	1.96
29889628--29890325	139	5.2	133	74	7	339	31	17	22	28	1.96
29890231--29890618	139	2.8	138	86	3	528	32	16	23	27	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218