genome.fa.s23.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  149  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45403967--45404055	38	2.4	37	86	1	115	17	2	41	38	1.62
45403989--45404062	7	9.9	7	73	13	58	16	1	45	36	1.56
45403988--45404055	16	3.9	16	77	19	64	16	1	45	36	1.56
45404006--45404062	30	2.0	28	82	6	69	17	1	45	35	1.59
45404390--45404443	27	2.0	26	83	16	67	77	1	3	16	1.00
45404402--45404444	19	2.3	18	84	11	59	76	2	2	18	1.00
45405054--45405115	32	2.0	32	93	3	108	51	8	0	40	1.31
45405096--45405129	14	2.4	14	95	0	59	41	11	0	47	1.40
45405215--45405245	15	2.1	15	100	0	62	61	0	0	38	0.96
45405231--45405292	12	5.5	11	75	17	56	53	0	3	43	1.17
45408894--45409046	43	3.6	43	81	5	186	24	17	26	31	1.97
45411899--45411949	26	2.0	26	88	0	75	39	11	25	23	1.89
45412233--45412287	19	2.8	18	82	15	65	43	0	7	49	1.30
45412233--45412289	20	2.8	20	89	5	80	42	0	7	50	1.29
45412360--45412393	17	1.9	18	88	5	52	32	11	11	44	1.77
45415936--45416063	57	2.2	56	78	8	134	24	24	26	25	2.00
45419365--45419394	3	10.0	3	100	0	60	33	0	0	66	0.92
45423920--45423965	22	2.2	21	88	7	67	65	2	0	32	1.05
45430641--45430692	25	2.1	25	92	7	88	25	26	9	38	1.86
45432974--45433001	14	2.0	14	100	0	56	57	0	0	42	0.99
45433035--45433109	32	2.4	31	82	6	87	45	18	9	26	1.80
45433099--45433165	34	1.9	35	87	3	100	44	13	8	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45435899--45436102	40	5.1	40	78	9	204	25	27	21	25	1.99
45437210--45437388	85	2.1	85	100	0	358	26	27	8	37	1.85
45447076--45447682	314	1.9	314	97	0	1142	20	22	13	43	1.87
45458706--45458735	15	2.0	15	93	0	51	63	13	13	10	1.52
45470319--45470354	16	2.2	17	90	5	56	58	11	13	16	1.63
45477886--45477979	49	1.9	48	97	2	179	34	17	13	35	1.89
45488827--45488887	32	1.9	32	100	0	122	24	6	21	47	1.74
45489336--45489402	20	3.3	20	91	0	107	46	4	25	23	1.71
45495041--45495114	20	3.7	20	88	0	112	51	4	24	20	1.64
45497716--45497769	27	2.0	27	100	0	108	14	18	7	59	1.58
45498747--45498793	13	3.5	14	77	8	53	51	12	14	21	1.76
45511115--45511285	42	4.1	42	77	6	143	31	18	16	32	1.94
45511134--45511285	42	3.6	42	81	1	189	29	19	17	33	1.95
45511147--45511301	84	1.8	84	87	2	231	30	19	18	31	1.95
45511454--45511515	30	2.1	30	100	0	124	50	12	3	33	1.57
45519954--45519979	3	8.7	3	100	0	52	65	0	0	34	0.93
45522779--45522821	21	2.0	22	81	4	52	69	4	4	20	1.25
45542948--45543023	36	2.1	35	85	7	100	30	9	25	35	1.87
45542958--45543027	35	2.0	36	91	2	115	28	11	22	37	1.89
45556325--45556369	20	2.4	20	85	10	60	20	6	6	66	1.38
45557894--45558674	394	2.0	393	90	2	1219	32	21	15	31	1.94
45560436--45560475	19	2.1	19	95	0	71	37	15	5	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45560621--45560704	43	2.0	43	88	6	127	50	1	23	25	1.57
45564199--45564225	13	2.1	13	100	0	54	37	22	18	22	1.95
45567207--45567281	30	2.5	30	97	0	141	32	34	16	17	1.92
45567336--45567401	22	3.0	21	86	6	80	24	31	1	42	1.64
45567346--45567401	22	2.5	22	91	2	94	26	32	1	39	1.67
45568569--45568593	7	3.6	7	100	0	50	28	0	12	60	1.32
45569242--45569276	18	1.9	18	94	0	61	25	31	8	34	1.86
45569694--45569779	44	1.9	45	90	2	138	39	0	11	48	1.40
45569790--45570373	23	24.4	23	68	16	118	45	24	0	30	1.53
45569805--45569897	29	3.4	29	78	18	117	46	25	0	27	1.53
45569869--45570284	73	5.8	66	81	14	276	45	23	0	31	1.53
45569849--45570345	167	3.0	161	81	13	552	45	23	0	30	1.53
45570044--45570104	21	2.8	22	85	9	72	49	21	0	29	1.50
45570088--45570211	29	4.8	27	75	23	108	45	22	0	31	1.53
45569959--45570321	73	5.0	73	84	4	477	46	23	0	30	1.53
45570228--45570289	29	2.2	28	91	2	97	46	17	0	35	1.49
45569841--45570317	144	3.3	142	78	11	489	46	23	0	30	1.53
45570261--45570321	21	2.8	22	87	9	81	49	22	0	27	1.50
45570261--45570373	44	2.5	43	84	12	138	46	24	0	29	1.53
45570379--45570589	116	1.8	116	93	0	368	38	8	9	43	1.67
45573629--45573856	126	1.8	126	96	0	420	31	22	15	29	1.95
45578575--45578674	42	2.4	42	77	0	110	22	34	18	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45582895--45582960	28	2.4	27	80	7	78	36	22	18	22	1.95
45583323--45583439	27	4.3	27	86	0	153	21	16	23	38	1.93
45585615--45585709	51	1.9	48	83	10	120	14	22	8	54	1.66
45586546--45586611	27	2.5	26	75	4	69	53	21	3	22	1.60
45586587--45586703	35	3.3	35	84	7	164	46	18	5	29	1.71
45586581--45586691	36	3.1	36	87	5	163	46	18	4	29	1.69
45589911--45589935	13	1.9	13	100	0	50	48	16	4	32	1.64
45589890--45590021	41	3.3	39	80	8	124	53	16	3	27	1.58
45589958--45590030	4	17.5	4	71	18	51	50	20	4	24	1.65
45589963--45590127	63	2.6	62	78	9	199	52	18	4	24	1.64
45590062--45590109	13	3.8	13	83	5	62	52	20	4	22	1.64
45591439--45591505	26	2.6	26	85	2	82	49	2	8	38	1.50
45593046--45593576	44	12.0	43	82	5	596	31	23	13	31	1.93
45594865--45594908	14	3.1	14	81	12	54	11	22	0	65	1.24
45594881--45594933	21	2.4	23	81	9	65	15	16	0	67	1.23
45595824--45595867	18	2.4	18	88	0	61	65	6	13	13	1.44
45599728--45599794	26	2.6	26	85	2	82	49	2	8	38	1.50
45601200--45601229	15	2.0	15	100	0	60	20	0	6	73	1.05
45604943--45605021	34	2.3	34	84	0	95	31	8	17	41	1.80
45606076--45606138	29	2.2	29	85	0	81	38	12	23	25	1.90
45607137--45607169	15	2.1	16	94	5	59	63	3	0	33	1.10
45611057--45611160	35	2.9	35	80	4	102	30	24	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45613204--45613230	6	4.5	6	100	0	54	0	14	0	85	0.61
45628853--45628956	34	3.0	34	76	8	111	34	25	21	19	1.96
45628985--45629060	34	2.2	34	83	2	89	34	23	21	21	1.97
45628857--45629175	143	2.2	143	79	3	381	33	23	20	22	1.97
45637196--45637273	33	2.4	33	82	0	102	37	24	12	25	1.91
45638654--45638703	6	8.5	6	78	12	59	20	0	0	80	0.72
45638653--45638703	17	2.9	17	85	2	75	21	0	0	78	0.75
45638653--45638696	5	8.0	5	85	14	52	22	0	0	77	0.77
45639659--45639700	18	2.3	19	88	12	61	80	0	19	0	0.70
45641644--45641677	18	1.9	18	94	5	61	0	11	0	88	0.52
45641735--45641804	22	3.2	22	97	0	131	50	14	11	24	1.75
45653809--45653882	27	2.6	28	81	12	80	66	1	6	25	1.24
45655182--45655215	16	2.1	16	94	0	59	41	0	8	50	1.34
45658280--45658338	24	2.5	24	88	0	91	44	0	25	30	1.55
45658404--45658468	20	3.4	19	69	14	62	35	4	15	44	1.67
45658379--45658491	37	3.1	37	96	1	201	33	4	14	47	1.64
45658391--45658485	17	5.2	17	66	14	64	34	3	12	49	1.57
45658492--45658592	9	10.6	9	87	8	130	21	8	30	38	1.84
45658492--45658592	20	5.3	18	86	9	130	21	8	30	38	1.84
45658492--45658592	31	3.5	29	88	7	152	21	8	30	38	1.84
45659313--45659646	43	7.8	43	83	4	401	27	29	17	24	1.98
45659313--45659640	128	2.6	129	84	5	434	27	29	17	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45663641--45663691	21	2.4	21	80	0	57	37	39	0	23	1.55
45664329--45664497	41	4.1	41	86	0	230	31	23	18	26	1.97
45667036--45667069	6	5.3	6	86	13	50	64	2	2	29	1.22
45679050--45679091	17	2.5	17	88	0	66	73	0	9	16	1.08
45685426--45685511	44	2.0	44	93	4	147	26	22	27	23	1.99
45691041--45691131	46	2.0	46	95	0	164	35	7	21	35	1.83
45723448--45723509	18	3.4	18	93	0	88	25	11	27	35	1.90
45723713--45723755	18	2.4	18	80	7	52	46	2	0	51	1.13
45725457--45725520	21	3.0	22	75	9	78	35	25	20	18	1.95
45726377--45726410	11	2.8	12	86	13	52	0	23	0	76	0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218