genome.fa.s23.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  103  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29889628--29890747	455	2.5	455	89	2	1725	32	17	22	28	1.96
29889628--29890747	44	24.7	45	71	13	324	32	17	22	28	1.96
29893642--29893677	17	2.3	15	90	9	54	44	11	11	33	1.75
29904143--29904336	73	2.7	73	80	2	205	28	8	2	59	1.40
29904495--29904521	6	4.5	6	100	0	54	14	14	0	70	1.17
29905175--29905228	23	2.4	23	81	6	76	42	7	11	38	1.68
29910929--29911017	31	3.0	30	75	8	92	39	14	14	31	1.87
29911895--29911947	22	2.4	22	83	3	61	58	1	11	28	1.43
29912942--29912985	22	2.0	21	87	12	63	63	22	4	9	1.42
29913076--29913134	31	1.9	31	89	0	91	18	16	5	59	1.55
29920594--29920657	3	21.7	3	77	6	60	26	3	3	67	1.21
29925729--29925901	85	2.0	85	98	0	337	41	9	10	38	1.72
29931274--29931398	59	2.1	60	79	7	139	39	5	15	40	1.70
29932691--29932730	17	2.4	17	88	12	64	67	0	7	25	1.16
29934737--29934962	124	1.8	125	91	2	375	29	17	21	32	1.96
29949308--29949871	82	6.9	82	91	0	885	30	25	20	23	1.99
29954233--29954803	23	25.1	22	77	13	522	26	0	25	48	1.53
29954233--29954806	68	8.4	66	78	11	449	26	0	24	48	1.53
29954289--29954756	136	3.4	133	83	9	545	25	0	25	48	1.53
29954234--29954806	159	3.6	155	86	6	737	26	0	24	48	1.53
29954575--29954674	45	2.4	40	80	15	128	26	0	25	49	1.51
29954845--29954896	25	2.1	25	100	0	104	42	11	0	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29955683--29955707	7	3.6	7	100	0	50	60	12	0	28	1.32
29955878--29955915	20	1.9	20	84	10	51	55	7	2	34	1.43
29956858--29956899	11	3.8	11	90	0	66	50	7	21	21	1.72
29956903--29956942	11	3.6	11	93	6	64	42	0	35	22	1.54
29957920--29957999	18	4.3	18	71	25	60	62	7	3	26	1.39
29957920--29957998	19	4.2	19	70	20	58	63	6	3	26	1.36
29958315--29958350	16	2.2	16	86	13	56	30	0	2	66	1.06
29958318--29958350	17	2.0	17	94	5	59	30	0	3	66	1.06
29961041--29961077	18	2.1	18	94	0	65	18	18	0	62	1.34
29963904--29963963	22	2.7	22	82	7	77	16	20	18	45	1.86
29966666--29966700	14	2.6	14	90	4	54	48	22	11	17	1.79
29967020--29967151	50	2.6	52	78	8	146	37	12	15	34	1.85
29968841--29968883	20	2.2	20	100	0	86	32	9	20	37	1.85
29971213--29971314	49	2.1	49	81	3	116	21	35	18	24	1.96
29973411--29973442	17	1.9	17	93	6	57	34	3	6	56	1.40
29974462--29974825	177	2.1	176	82	0	440	30	15	9	44	1.78
29976931--29977042	57	2.0	56	87	1	161	34	8	8	48	1.64
29976931--29977021	31	3.1	29	67	23	75	34	8	7	49	1.62
29978095--29978130	6	6.0	6	90	0	54	13	19	2	63	1.41
29978487--29978537	20	2.6	20	78	12	52	58	3	0	37	1.16
29978507--29978552	17	2.8	17	87	9	60	63	0	0	36	0.95
29978507--29978570	26	2.5	25	82	12	69	65	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29990670--29990715	23	2.0	24	86	4	67	76	4	2	17	1.06
30004489--30004533	17	2.5	19	89	7	67	6	24	0	68	1.13
30004509--30004536	14	2.0	14	100	0	56	7	28	0	64	1.20
30004607--30004649	17	2.4	18	88	3	61	4	9	16	69	1.31
30004607--30004654	6	8.2	6	93	4	62	4	10	18	66	1.37
30004607--30004654	17	2.8	17	87	3	60	4	10	18	66	1.37
30007691--30007728	18	2.2	17	90	4	58	36	2	0	60	1.11
30007814--30007966	18	7.8	18	67	22	69	41	0	2	54	1.19
30007592--30008225	120	5.3	120	94	2	1082	43	1	4	51	1.28
30008541--30008844	104	3.1	94	91	6	466	52	5	0	40	1.32
30008543--30008669	18	6.9	18	67	18	73	54	4	0	40	1.27
30008696--30008843	38	4.2	38	67	22	122	54	6	0	39	1.30
30008633--30009340	120	6.0	122	87	8	1036	52	5	0	41	1.30
30008831--30008993	28	5.5	28	65	22	91	55	3	0	40	1.20
30008831--30008895	18	4.2	16	74	18	66	61	0	0	38	0.96
30008858--30008895	18	2.2	18	95	4	69	65	0	0	34	0.93
30008754--30009340	239	2.4	238	92	3	953	52	5	1	41	1.31
30009002--30009302	56	5.1	59	66	24	179	50	5	0	43	1.32
30009232--30009408	79	2.2	81	82	10	220	48	7	1	41	1.42
30010780--30010883	49	2.1	49	92	0	172	48	13	7	30	1.71
30013795--30013837	21	2.0	21	100	0	86	34	18	0	46	1.50
30014597--30014643	22	2.2	21	96	3	85	53	6	29	10	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30015557--30015625	21	3.2	22	72	15	81	33	2	2	60	1.26
30015546--30015636	42	2.2	42	100	0	182	31	2	4	61	1.28
30015715--30015760	21	2.2	21	77	14	51	30	0	13	56	1.37
30015816--30015886	22	3.2	22	69	11	63	16	4	15	63	1.46
30020013--30020084	35	2.0	36	84	12	96	63	22	1	12	1.36
30025827--30025899	30	2.4	30	77	8	78	43	12	2	41	1.56
30039415--30039517	51	2.0	51	100	0	206	21	23	13	41	1.88
30040508--30040572	32	2.0	32	96	0	121	12	16	24	46	1.82
30042129--30042168	20	2.0	20	85	0	53	50	10	10	30	1.69
30042117--30042183	34	1.9	35	87	3	100	46	11	8	32	1.72
30043178--30043254	34	2.3	33	91	6	129	24	20	24	29	1.99
30043520--30043659	27	5.3	27	88	5	187	37	15	15	30	1.89
30043520--30043671	54	2.9	54	88	3	211	37	14	14	33	1.87
30044637--30044738	33	3.1	33	83	5	134	44	12	23	19	1.85
30049466--30049496	13	2.4	13	100	0	62	41	9	6	41	1.63
30049903--30049931	10	2.9	10	100	0	58	41	17	0	41	1.49
30051482--30051535	27	2.0	27	82	7	65	37	0	9	53	1.33
30052368--30052405	18	2.2	18	85	4	51	28	18	7	44	1.78
30055803--30055847	21	2.1	21	91	0	72	33	4	17	44	1.69
30056428--30056467	20	2.1	19	85	4	53	17	7	10	65	1.46
30062283--30062308	13	2.0	13	100	0	52	61	0	7	30	1.24
30062543--30062615	34	2.2	33	85	4	101	24	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30062885--30063090	27	7.6	27	87	0	286	36	14	16	32	1.89
30063789--30063823	4	8.8	4	87	12	54	80	0	0	20	0.72
30070490--30070629	27	5.3	27	86	2	194	37	14	16	31	1.88
30070878--30070915	19	2.0	19	85	10	51	23	44	15	15	1.85
30072780--30072831	21	2.5	20	71	3	50	46	17	19	17	1.85
30072759--30072948	42	4.6	41	76	9	136	44	15	22	17	1.87
30085811--30086047	42	5.6	41	78	11	196	45	18	20	16	1.86
30086956--30087166	101	2.1	101	99	0	413	18	24	6	51	1.69
30091028--30091073	14	3.2	14	87	3	56	28	2	10	58	1.43
30097027--30098074	532	2.0	532	100	0	2096	25	28	18	27	1.98
30105957--30106006	12	4.4	12	78	9	52	52	0	0	48	1.00
30105967--30106014	23	2.2	21	88	7	69	43	0	0	56	0.99
30105966--30106009	12	3.8	12	80	17	56	47	0	0	52	1.00
30107456--30107488	5	6.6	5	86	13	50	21	0	0	78	0.75
30111338--30111511	70	2.5	70	80	5	190	27	21	21	29	1.99
30111409--30111550	67	2.1	70	81	6	166	28	22	19	29	1.98
30116226--30116272	10	4.6	10	82	12	51	34	0	2	63	1.06
30116228--30116263	12	3.3	11	88	11	56	33	0	0	66	0.92
30131100--30131234	44	3.1	44	67	12	123	31	22	21	25	1.98
30130920--30131160	132	1.8	132	91	0	401	32	21	21	24	1.98
30131056--30131248	88	2.2	88	92	0	314	31	22	21	24	1.98
30130922--30131194	132	2.1	132	86	1	377	32	21	21	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30130919--30131385	217	2.1	220	90	2	719	31	21	23	23	1.98
30131144--30131544	132	3.1	131	89	3	594	29	20	24	24	1.99
30132341--30132382	23	2.0	23	86	13	63	4	14	2	78	1.01
30140979--30141029	25	2.0	25	81	7	59	9	35	0	54	1.33
30143655--30143681	5	5.4	5	100	0	54	81	0	0	18	0.69
30149995--30150113	56	2.1	56	96	0	220	43	9	24	22	1.82
30151238--30151460	40	5.6	40	84	6	276	25	21	27	25	2.00
30151240--30151493	118	2.2	117	80	8	266	26	21	27	25	1.99
30153725--30153767	17	2.5	18	85	7	63	9	2	18	69	1.26
30159320--30159398	37	2.1	37	90	0	122	25	31	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218