genome.fa.s23.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  136  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41441402--41441614	101	2.1	101	87	0	309	29	25	14	30	1.95
41441610--41441684	27	2.8	27	95	0	141	29	10	0	60	1.31
41451564--41451678	25	4.6	25	78	5	90	32	16	26	25	1.96
41451583--41451686	25	4.2	25	81	3	95	32	14	26	25	1.95
41455112--41455416	122	2.5	123	86	0	405	23	19	19	37	1.94
41455109--41455409	41	7.4	41	85	0	343	23	18	19	37	1.94
41466957--41467139	40	4.6	39	86	4	199	27	20	26	25	1.99
41466917--41467139	40	5.6	39	83	7	191	26	20	26	26	1.99
41466971--41467139	79	2.1	80	84	5	218	27	19	26	26	1.99
41467008--41467162	79	2.0	79	79	7	172	26	20	27	26	1.99
41483015--41483198	40	4.6	40	82	6	196	23	20	27	28	1.99
41483015--41483195	80	2.3	81	83	9	221	23	20	27	27	1.99
41483096--41483245	40	3.8	38	80	10	131	25	22	28	24	1.99
41490851--41491034	40	4.6	40	82	6	196	23	20	27	28	1.99
41490851--41491031	80	2.3	81	83	9	221	23	20	27	27	1.99
41490932--41491081	40	3.8	38	80	10	131	25	22	28	24	1.99
41493100--41493163	22	2.9	22	75	9	67	43	14	21	20	1.87
41493298--41493364	27	2.5	27	85	4	91	37	23	20	17	1.94
41493485--41493550	27	2.5	26	80	5	78	24	27	15	33	1.95
41493541--41493655	27	4.3	27	79	8	126	26	14	16	42	1.87
41497932--41497968	9	4.1	9	92	0	65	45	13	10	29	1.77
41498182--41498241	30	2.0	31	86	3	86	20	40	0	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41498339--41498378	20	1.9	21	85	10	55	22	22	0	55	1.44
41509437--41509476	18	2.2	18	86	0	53	17	27	7	47	1.74
41511514--41511555	12	3.5	12	75	12	50	33	0	42	23	1.55
41511514--41511560	24	1.9	24	91	4	76	34	0	38	27	1.57
41514383--41514461	25	3.3	25	61	10	65	32	5	29	32	1.79
41514335--41514647	47	6.7	47	93	4	521	33	8	29	29	1.86
41514766--41514844	37	2.1	37	90	0	122	24	18	31	25	1.98
41516011--41516049	14	2.8	15	85	14	57	28	10	20	41	1.85
41516059--41516290	40	5.8	40	84	0	311	26	21	25	26	2.00
41518359--41518399	19	2.2	19	86	0	55	21	21	39	17	1.93
41518632--41518847	27	8.0	27	85	1	270	43	21	16	18	1.88
41518625--41518848	54	4.1	53	86	3	304	43	20	16	20	1.88
41518632--41518847	109	2.0	109	88	2	319	43	21	16	18	1.88
41519216--41519363	28	5.3	28	84	4	201	21	23	23	31	1.99
41521054--41521088	14	2.6	13	86	8	52	40	0	0	60	0.97
41552741--41552783	20	2.2	20	86	0	59	30	18	37	13	1.90
41560170--41560280	39	2.8	39	75	4	107	42	13	9	35	1.76
41568209--41568369	27	6.0	26	83	3	169	42	24	14	18	1.88
41568209--41568465	54	4.8	54	83	3	221	42	22	14	19	1.88
41568209--41568465	81	3.2	80	83	5	241	42	22	14	19	1.88
41568305--41568510	27	7.7	27	83	6	206	42	21	15	20	1.88
41568313--41568509	55	3.7	55	80	8	201	44	19	15	20	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41568209--41568543	27	12.5	27	79	9	82	42	22	14	21	1.89
41572154--41572183	13	2.3	13	94	0	51	30	20	6	43	1.77
41572112--41572174	26	2.4	25	77	12	65	36	19	3	41	1.67
41576857--41576895	19	2.1	19	85	9	53	35	10	7	46	1.67
41590616--41590727	27	4.1	27	85	6	138	23	16	20	39	1.92
41593266--41593340	25	3.0	25	86	3	98	26	25	16	32	1.96
41593278--41593361	25	3.4	25	86	3	98	27	26	19	27	1.99
41595284--41595323	14	2.9	14	96	0	71	60	12	0	27	1.33
41596595--41596656	30	2.1	30	93	0	106	37	16	16	30	1.90
41603149--41603191	20	2.1	20	86	4	59	9	27	2	60	1.40
41603176--41603214	12	3.2	12	88	0	51	7	17	2	71	1.21
41603182--41603284	18	5.6	18	68	6	64	11	20	1	66	1.33
41603176--41603277	24	4.2	24	67	27	63	11	21	1	64	1.36
41603220--41603284	18	3.5	18	78	12	69	9	23	1	66	1.29
41608615--41609203	47	12.5	47	96	1	1054	29	29	8	32	1.87
41612127--41612175	26	2.0	25	81	14	59	10	30	2	57	1.43
41612699--41612755	21	2.7	21	77	0	60	15	29	31	22	1.95
41612771--41612807	19	1.9	19	94	0	65	18	35	21	24	1.96
41612774--41612817	19	2.3	19	84	0	52	20	36	27	15	1.93
41624195--41624243	25	1.9	26	83	4	64	38	10	12	38	1.77
41626142--41626170	12	2.3	13	94	5	51	20	6	6	65	1.40
41632603--41632631	2	15.0	2	92	7	51	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41638396--41638455	16	3.9	15	77	12	52	53	1	1	43	1.20
41638399--41638468	22	3.3	21	75	13	65	51	1	2	44	1.25
41643528--41643599	18	4.2	18	70	20	64	48	4	1	45	1.30
41645293--41645348	31	1.9	31	85	10	82	60	0	0	39	0.97
41646311--41646401	17	5.3	18	72	23	65	52	2	3	41	1.30
41647134--41647203	35	2.0	35	100	0	140	31	14	17	37	1.89
41650437--41650502	33	2.0	33	100	0	132	36	6	6	51	1.51
41650743--41650787	20	2.3	20	96	3	83	55	0	0	44	0.99
41651422--41651496	31	2.4	31	84	0	96	36	13	6	44	1.70
41651890--41651951	3	21.0	3	96	3	117	33	0	0	66	0.92
41654099--41654285	100	1.8	103	79	6	218	23	29	20	26	1.99
41654049--41654291	50	4.8	50	78	6	186	24	27	20	26	1.99
41654633--41654690	30	1.9	30	82	6	73	27	25	5	41	1.76
41657166--41657218	20	2.7	20	75	0	52	56	11	7	24	1.60
41663106--41663151	23	2.0	23	82	0	56	54	6	0	39	1.26
41663116--41663158	22	1.9	23	85	4	61	62	0	0	37	0.95
41666252--41666728	139	3.4	138	75	5	408	30	28	14	27	1.95
41666252--41666791	28	19.4	28	69	2	208	30	28	14	27	1.95
41669381--41669440	30	2.0	30	100	0	120	50	16	3	30	1.62
41675328--41676025	346	2.0	347	95	0	1263	26	14	14	44	1.83
41679977--41680033	27	2.1	27	83	9	71	40	0	17	42	1.49
41688040--41688101	9	6.7	9	76	7	61	37	1	37	24	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41692231--41692273	18	2.4	16	82	17	50	41	13	0	44	1.44
41692231--41692275	19	2.5	17	80	20	56	42	13	0	44	1.43
41693985--41694022	15	2.8	13	85	14	58	47	26	0	26	1.52
41702836--41703066	114	2.0	114	93	0	390	47	7	5	39	1.55
41705892--41706004	49	2.3	49	90	3	174	25	19	31	23	1.98
41706688--41706740	27	2.0	27	96	0	97	33	0	18	47	1.49
41707534--41707740	87	2.4	87	77	2	202	35	12	20	32	1.89
41719899--41719965	29	2.3	31	80	15	79	35	14	11	37	1.84
41720132--41720225	29	3.1	30	83	4	93	34	10	18	37	1.85
41720149--41720225	29	2.6	30	87	4	111	37	10	18	33	1.85
41721655--41721842	45	4.2	45	86	4	229	21	16	26	35	1.95
41723847--41723980	69	2.0	68	96	1	250	26	8	22	41	1.83
41728397--41728442	18	2.5	19	75	10	51	34	8	0	56	1.30
41728564--41728622	31	1.9	31	100	0	118	49	6	13	30	1.68
41734198--41734223	3	8.7	3	100	0	52	30	0	0	69	0.89
41740291--41740356	30	2.2	29	82	15	80	56	0	0	43	0.99
41740976--41741011	19	1.9	18	88	5	54	36	2	0	61	1.11
41745880--41745952	9	8.2	9	96	1	112	21	10	26	41	1.86
41747589--41748117	140	3.8	139	84	4	670	23	12	12	51	1.74
41748231--41748289	23	2.5	22	76	13	64	23	1	1	72	1.02
41748387--41748691	144	2.2	141	80	9	326	52	11	10	25	1.69
41753572--41753623	26	2.0	26	96	0	95	25	11	21	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41764753--41764893	50	2.8	50	76	0	147	25	29	18	26	1.98
41767741--41767853	20	5.7	20	68	8	68	35	21	32	10	1.88
41767741--41767926	60	3.1	60	86	1	248	34	19	32	12	1.90
41767913--41768030	57	2.1	56	95	1	209	26	22	25	25	2.00
41767970--41768133	85	1.9	85	91	0	265	29	21	21	26	1.99
41769107--41769133	14	1.9	14	100	0	54	44	33	0	22	1.53
41770240--41770274	17	2.1	17	94	5	63	42	22	14	20	1.88
41786330--41786383	19	2.8	18	83	13	63	37	11	9	42	1.73
41786326--41786383	20	2.9	19	82	14	73	39	12	8	39	1.73
41788604--41788674	20	3.5	20	79	9	81	36	4	15	43	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218