genome.fa.s23.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  162  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49157485--49157826	65	5.5	65	78	11	401	39	1	12	46	1.51
49157431--49157889	115	3.9	116	83	10	592	40	1	13	45	1.51
49157585--49157616	16	2.0	16	100	0	64	31	0	25	43	1.55
49157826--49157858	16	2.1	16	100	0	66	30	0	24	45	1.53
49157795--49157892	47	2.0	49	86	5	137	36	0	15	47	1.45
49157957--49157989	16	2.1	16	94	0	57	27	18	3	51	1.60
49158887--49158949	33	1.9	33	93	0	108	65	14	0	20	1.27
49158903--49158941	19	2.0	19	85	5	51	69	10	0	20	1.17
49159304--49159393	38	2.4	38	90	7	155	46	11	20	22	1.81
49161284--49161311	6	4.7	6	100	0	56	17	64	0	17	1.30
49161308--49161541	89	2.6	89	95	0	414	46	23	1	28	1.61
49161752--49161963	113	1.9	114	82	4	268	33	17	21	27	1.96
49165338--49165397	20	3.0	20	92	0	93	11	38	5	45	1.63
49166099--49166165	31	2.1	33	88	5	102	17	16	22	43	1.88
49166112--49166183	33	2.3	31	88	7	101	19	18	22	40	1.92
49167232--49167305	12	6.8	11	71	26	52	44	0	1	54	1.08
49167240--49167323	29	3.0	26	76	19	64	45	1	2	51	1.22
49167428--49167873	9	50.9	9	67	23	224	46	20	0	32	1.57
49167432--49167514	43	1.9	43	87	0	121	49	21	0	28	1.50
49167540--49167838	51	5.3	56	77	19	231	46	19	1	33	1.57
49167551--49167795	44	5.6	44	67	26	132	46	19	0	32	1.56
49167530--49167795	113	2.4	106	90	4	406	46	19	0	32	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49167741--49167873	34	3.8	34	74	13	92	45	21	1	31	1.61
49173754--49174058	42	7.2	42	87	2	423	25	20	20	33	1.97
49174767--49175514	41	18.5	41	80	6	767	35	23	19	21	1.96
49174848--49175582	360	2.0	360	93	0	1236	34	23	19	21	1.96
49175551--49175685	40	3.4	39	73	9	123	22	21	17	37	1.94
49176876--49176983	43	2.5	42	82	7	121	29	27	12	30	1.92
49177260--49177350	43	2.1	43	89	2	139	43	12	10	32	1.77
49179924--49179970	24	1.9	23	83	12	58	34	12	10	42	1.78
49181439--49181496	28	2.1	28	83	6	73	37	32	0	29	1.58
49181443--49181490	21	2.3	21	78	7	53	37	35	0	27	1.57
49183243--49183346	41	2.5	41	86	7	140	36	34	15	13	1.87
49183380--49183453	37	2.0	37	84	5	96	22	22	17	36	1.95
49183420--49183503	40	2.1	40	82	4	98	27	22	16	33	1.96
49189784--49189814	16	1.9	16	93	0	53	61	32	6	0	1.21
49190690--49190732	21	2.0	21	82	8	52	41	4	2	51	1.35
49194238--49194262	12	2.1	12	100	0	50	92	0	0	8	0.40
49201309--49201354	24	1.9	24	86	0	65	43	6	4	45	1.49
49207311--49207362	16	3.2	16	72	5	50	53	9	5	30	1.57
49207362--49207711	17	19.9	17	69	12	181	45	10	14	30	1.78
49207387--49207456	36	1.9	37	82	2	88	40	14	15	30	1.87
49207443--49207485	21	2.0	21	81	0	50	37	6	13	41	1.72
49207572--49207703	19	7.4	19	69	13	77	46	10	14	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49208028--49208084	6	10.0	6	85	9	59	70	0	0	29	0.88
49208216--49208285	14	4.9	14	72	17	56	0	20	0	80	0.72
49208229--49208269	11	3.7	11	90	9	66	0	24	0	75	0.80
49208219--49208287	22	3.0	22	77	12	68	0	20	0	79	0.73
49208552--49208608	3	19.0	3	79	13	64	0	31	0	68	0.90
49208553--49208608	20	2.6	21	86	8	69	0	32	0	67	0.91
49208556--49208607	10	5.2	10	79	9	61	0	30	0	69	0.89
49208981--49209097	30	3.9	29	77	11	94	44	3	22	29	1.69
49208996--49209097	30	3.4	30	84	2	134	44	3	22	29	1.71
49209093--49209127	15	2.3	16	90	9	56	31	0	2	65	1.07
49209369--49209586	54	4.1	55	88	8	324	37	17	16	28	1.92
49209565--49209599	14	2.5	14	90	0	52	60	2	17	20	1.49
49209687--49209934	89	2.8	85	81	9	284	36	19	18	25	1.94
49209847--49209880	16	2.1	16	88	0	50	64	5	11	17	1.45
49209687--49209941	91	2.9	88	82	8	313	36	18	18	25	1.94
49209899--49211280	192	7.2	192	98	1	2626	35	20	13	30	1.91
49210721--49210915	72	2.7	70	77	8	196	35	20	13	30	1.91
49219420--49219521	16	6.0	16	68	20	55	48	11	8	31	1.71
49219419--49219457	18	2.2	17	86	4	51	41	7	5	46	1.55
49219479--49219830	17	19.9	17	69	13	185	44	10	14	30	1.79
49219560--49219602	21	2.0	21	81	0	50	37	6	13	41	1.72
49219760--49219830	19	3.9	19	75	5	67	46	11	14	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49219478--49219830	36	10.0	34	72	10	174	44	10	14	30	1.79
49219936--49219979	22	2.0	22	86	8	63	40	9	13	36	1.76
49220145--49220198	6	9.5	6	84	9	53	72	0	0	27	0.85
49220343--49220380	11	3.5	11	89	10	60	0	23	0	76	0.79
49220672--49220731	24	2.5	24	86	7	79	0	33	0	66	0.92
49220660--49220731	3	24.0	3	78	16	62	0	30	0	69	0.89
49220683--49220731	13	3.9	13	75	24	52	0	36	0	63	0.95
49220700--49220728	10	2.9	10	100	0	58	0	37	0	62	0.96
49221099--49221215	30	4.0	28	75	14	92	45	4	21	29	1.71
49221114--49221215	30	3.4	30	78	8	118	45	4	21	28	1.72
49221211--49221246	15	2.4	15	90	0	54	27	0	2	69	1.02
49222436--49222478	11	3.7	11	76	11	50	65	0	2	32	1.06
49227471--49227515	19	2.3	20	84	3	56	55	4	0	40	1.20
49228950--49228987	8	4.8	8	90	0	58	15	31	0	52	1.43
49230553--49230598	21	2.1	22	88	4	67	69	4	23	2	1.17
49231377--49231484	37	2.7	41	77	9	107	23	13	25	37	1.92
49247141--49247186	18	2.6	17	83	12	58	34	0	0	65	0.93
49247174--49247243	23	3.1	24	75	19	78	45	0	0	54	0.99
49249578--49249636	25	2.3	27	80	13	72	32	25	23	18	1.97
49253128--49253172	24	2.0	22	84	16	58	35	15	13	35	1.87
49256067--49256105	13	3.0	13	96	0	69	20	30	23	25	1.98
49256886--49256928	21	2.0	21	90	0	68	25	20	30	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49263026--49263102	24	3.2	24	80	9	86	16	23	23	36	1.94
49266144--49266202	22	2.6	22	86	7	75	35	6	1	55	1.36
49270227--49270253	3	9.0	3	100	0	54	33	0	0	66	0.92
49272800--49272839	21	1.9	21	89	0	62	47	5	10	37	1.59
49283499--49283532	16	2.1	16	88	0	50	17	8	8	64	1.47
49285515--49285569	9	6.1	9	86	0	83	45	9	10	34	1.71
49285515--49285569	18	3.1	18	94	0	92	45	9	10	34	1.71
49287817--49288220	164	2.5	164	95	0	718	34	21	18	25	1.96
49294779--49294841	27	2.4	26	80	12	67	61	3	3	31	1.27
49294970--49295010	18	2.3	18	87	8	57	65	4	4	24	1.32
49299906--49299943	6	6.2	6	87	6	58	13	15	15	55	1.70
49299906--49299943	19	2.1	18	95	5	67	13	15	15	55	1.70
49301517--49301763	50	4.8	50	80	4	228	22	27	21	28	1.99
49301566--49301752	100	1.8	103	83	6	254	22	28	20	27	1.99
49309324--49309451	49	2.6	49	78	3	141	32	21	23	22	1.98
49312101--49312164	18	3.8	18	72	19	66	14	31	40	14	1.85
49313757--49313829	38	2.0	37	84	10	96	31	9	23	35	1.87
49315469--49315524	10	5.2	10	76	21	51	51	1	0	46	1.11
49315489--49315532	20	2.3	19	88	4	61	50	4	0	45	1.22
49315857--49315977	60	2.0	61	96	1	226	21	10	18	49	1.77
49317687--49317824	41	3.4	41	80	0	132	18	12	31	38	1.87
49317863--49317917	16	3.8	15	77	11	53	41	3	3	50	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49318207--49318244	14	2.7	15	88	12	62	26	0	31	42	1.56
49318835--49318888	19	2.8	18	78	10	54	70	3	5	20	1.23
49318873--49318974	50	2.1	48	87	10	145	45	7	0	46	1.39
49319627--49319728	50	2.1	50	82	14	124	45	8	1	44	1.46
49320274--49320324	16	3.2	16	74	0	57	11	43	21	23	1.85
49321055--49321098	22	2.0	22	95	0	79	31	13	15	38	1.87
49321479--49321603	55	2.4	52	83	9	155	49	12	0	37	1.46
49321531--49321887	9	40.2	9	65	23	109	46	19	2	32	1.62
49321562--49321612	16	3.2	16	75	10	59	50	13	0	35	1.42
49321566--49321613	12	4.3	12	71	28	52	52	14	0	33	1.42

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218