genome.fa.s23.2.7.7.80.10.50.1000.187.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  187  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55676481--55676548	25	2.7	24	74	19	66	41	0	1	57	1.08
55681860--55681956	40	2.4	40	87	5	133	40	24	18	16	1.91
55681967--55682280	114	2.8	111	82	7	373	25	23	23	28	2.00
55683210--55683274	14	4.6	14	75	11	62	6	1	36	55	1.34
55683251--55683281	15	2.1	15	93	0	53	9	0	32	58	1.31
55683201--55683282	28	3.0	27	76	13	94	7	1	35	56	1.35
55683206--55683294	28	3.1	27	71	20	67	8	1	37	52	1.40
55684331--55684374	19	2.3	19	84	0	61	31	43	2	22	1.66
55686500--55686559	18	3.3	18	65	21	52	50	11	5	33	1.61
55686466--55686598	37	3.6	37	90	2	205	49	9	6	33	1.62
55686543--55687052	57	9.1	57	79	7	551	46	9	5	38	1.60
55686640--55686677	20	1.9	20	100	0	76	42	5	7	44	1.56
55686707--55686881	37	4.7	37	93	0	287	48	9	6	36	1.62
55686863--55686958	20	4.9	20	72	12	83	43	7	6	42	1.57
55686466--55687199	280	2.7	280	90	4	1139	47	9	5	37	1.60
55686987--55687310	37	8.7	37	83	8	342	48	10	4	36	1.59
55686941--55687269	93	3.5	92	81	8	432	48	10	4	37	1.57
55686891--55687238	149	2.3	150	95	1	628	47	9	4	37	1.57
55687024--55687367	56	6.2	56	75	12	312	48	10	4	37	1.57
55687292--55687330	20	2.0	20	94	0	69	43	5	5	46	1.48
55687343--55687607	34	7.7	34	78	4	255	44	20	2	32	1.66
55687342--55687637	9	34.1	9	70	12	199	43	21	2	32	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55687345--55687598	104	2.4	104	94	1	429	43	21	2	32	1.67
55693085--55693134	21	2.4	21	89	0	73	34	18	44	4	1.68
55693448--55693606	42	3.8	42	85	6	214	37	23	16	22	1.94
55696210--55696269	18	3.4	18	64	13	52	43	6	10	40	1.64
55696472--55696590	43	2.8	43	87	7	170	21	20	31	26	1.98
55706118--55706162	18	2.4	19	85	14	58	33	6	2	57	1.37
55709761--55709849	40	2.3	39	84	2	115	21	39	20	19	1.93
55716112--55716137	6	4.3	6	100	0	52	46	0	34	19	1.50
55716277--55716352	26	2.9	26	86	0	98	40	6	18	34	1.76
55721310--55721400	14	6.3	15	77	17	61	37	37	0	25	1.56
55721341--55721386	22	2.1	22	83	0	56	39	39	0	21	1.54
55721397--55721443	14	3.3	14	84	3	58	40	29	0	29	1.57
55721608--55721662	23	2.5	22	81	3	65	30	41	1	25	1.66
55721683--55721713	15	2.1	15	93	0	53	35	45	0	19	1.51
55721968--55722289	114	2.8	113	90	1	493	27	27	21	22	1.99
55722183--55722355	72	2.4	73	87	0	240	26	26	21	26	1.99
55722073--55722467	186	2.1	186	86	2	544	26	27	21	25	1.99
55722255--55722467	114	1.9	113	87	2	311	25	27	21	25	1.99
55723456--55723508	18	2.9	18	82	2	61	41	45	1	11	1.51
55723480--55723504	13	1.9	13	100	0	50	40	48	0	12	1.40
55723628--55723667	9	4.4	9	93	0	71	25	10	22	42	1.84
55727706--55727743	19	2.0	19	94	0	67	47	13	15	23	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55731236--55731303	34	2.0	34	97	0	127	17	25	11	45	1.82
55734961--55734992	14	2.3	14	100	0	64	53	12	9	25	1.68
55738830--55738960	65	2.0	65	100	0	262	48	16	12	22	1.80
55747604--55747629	7	3.7	7	100	0	52	15	0	38	46	1.46
55749747--55749835	29	2.8	31	70	16	76	56	1	6	35	1.33
55749945--55749990	3	15.3	3	82	8	58	60	2	0	36	1.09
55749992--55750024	14	2.4	14	85	14	50	78	12	0	9	0.95
55750574--55750602	13	2.3	13	94	5	51	86	0	0	13	0.58
55750568--55750626	23	2.5	25	78	13	63	76	0	6	16	1.00
55758585--55758717	56	2.3	57	83	3	151	31	12	9	45	1.75
55759153--55759190	19	2.0	19	89	0	58	31	0	0	68	0.90
55761226--55761287	11	5.9	10	75	16	54	58	1	0	40	1.08
55767224--55767264	21	2.0	21	90	0	64	19	29	21	29	1.98
55775960--55776004	22	2.0	22	95	0	81	20	6	8	64	1.44
55788627--55788688	31	2.0	31	96	0	115	33	9	14	41	1.79
55789754--55789789	18	2.0	18	88	0	54	30	2	8	58	1.42
55789813--55789868	20	3.2	16	79	18	51	53	1	1	42	1.21
55789829--55789867	20	2.0	20	94	0	69	48	0	2	48	1.15
55793663--55793722	3	20.0	3	78	0	66	30	36	0	33	1.58
55793662--55793715	27	2.0	27	92	0	90	31	38	0	29	1.57
55797992--55798017	13	2.0	13	100	0	52	0	0	23	76	0.78
55800764--55800884	63	1.9	63	85	6	165	23	14	25	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55806297--55806679	120	3.2	120	98	0	721	44	1	6	47	1.38
55806628--55806669	17	2.6	16	82	17	52	54	0	0	45	0.99
55806898--55806965	16	4.2	16	96	0	127	38	35	0	26	1.57
55811508--55811731	40	5.7	40	86	5	269	25	27	22	24	2.00
55811508--55811731	79	2.8	80	85	6	269	25	27	22	24	2.00
55811510--55811731	119	1.9	119	83	7	290	25	27	22	24	2.00
55812866--55813041	56	3.1	56	99	0	343	22	23	9	44	1.81
55817603--55817641	18	2.2	17	86	13	53	33	0	20	46	1.51
55817759--55817787	8	3.6	8	100	0	58	24	13	27	34	1.93
55817873--55817950	23	3.3	23	90	1	129	21	20	26	30	1.98
55824936--55824973	17	2.2	17	86	9	51	31	0	21	47	1.51
55825198--55825274	23	3.3	23	90	5	129	20	20	27	31	1.98
55832243--55832280	17	2.2	17	86	9	51	31	0	21	47	1.51
55832399--55832427	8	3.6	8	100	0	58	24	13	27	34	1.93
55832513--55832585	23	3.2	23	92	0	128	23	21	24	30	1.99
55834335--55834368	16	2.1	16	88	0	50	23	2	29	44	1.68
55835361--55835387	2	13.5	2	100	0	54	0	48	0	51	1.00
55844633--55844662	4	7.5	4	92	0	51	53	0	23	23	1.46
55848150--55848178	3	9.7	3	100	0	58	31	0	0	68	0.89
55850138--55850181	15	2.9	15	83	6	54	40	0	0	59	0.98
55852080--55852125	4	11.5	4	86	9	67	73	0	4	21	1.00
55852079--55852124	24	2.0	23	95	4	83	73	0	4	21	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55858283--55858327	22	2.0	22	91	0	72	48	15	2	33	1.57
55862877--55862921	22	2.0	22	91	0	72	48	15	2	33	1.57
55866012--55866048	9	4.1	9	86	13	58	32	10	10	45	1.74
55876344--55876376	2	16.5	2	100	0	66	0	48	0	51	1.00
55885552--55885600	26	1.9	25	91	4	80	63	0	2	34	1.06
55889466--55889517	25	2.0	26	81	3	61	63	13	5	17	1.48
55894097--55894189	41	2.2	42	92	1	161	37	1	9	51	1.42
55895220--55895261	15	2.7	16	82	14	52	52	2	0	45	1.13
55895229--55895270	15	2.9	15	82	10	52	52	0	0	47	1.00
55895339--55895390	15	3.6	15	80	12	56	53	1	0	44	1.11
55895456--55895500	15	2.9	15	83	9	56	51	2	0	46	1.13
55895575--55895620	16	2.9	16	78	12	51	52	2	0	45	1.13
55895575--55895629	15	3.7	15	79	13	53	52	1	0	45	1.11
55895218--55895754	239	2.2	240	96	1	986	49	5	2	42	1.37
55895218--55895754	120	4.5	120	97	0	986	49	5	2	42	1.37
55902363--55902408	20	2.2	20	84	3	56	63	2	10	23	1.38
55903756--55903820	29	2.2	29	83	5	78	52	9	9	29	1.64
55905198--55905227	14	2.1	15	93	6	53	46	0	0	53	1.00
55909109--55909254	9	15.2	9	69	18	57	27	6	2	63	1.32
55909112--55909234	20	5.8	20	67	22	72	27	4	3	64	1.30
55909112--55909155	19	2.3	20	88	7	65	25	4	2	68	1.20
55909114--55909233	29	4.1	28	70	16	84	27	5	3	64	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55909109--55909242	29	4.6	29	67	24	68	27	5	2	64	1.30
55910164--55910244	37	2.2	36	82	8	101	29	2	8	59	1.40
55911139--55911168	5	6.0	5	100	0	60	60	0	0	40	0.97
55915546--55915675	67	2.0	66	93	1	224	28	34	17	19	1.95
55918559--55918590	5	6.4	5	100	0	64	62	0	0	37	0.95
55918591--55918641	6	8.3	6	89	4	57	21	19	0	58	1.39
55920292--55920341	18	2.8	19	73	11	52	26	2	2	70	1.09
55927824--55927887	25	2.7	24	74	13	69	21	1	10	65	1.32
55929389--55929413	3	8.3	3	100	0	50	68	0	0	32	0.90
55936700--55936765	32	2.1	32	100	0	132	42	15	25	16	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218