genome.fa.s23.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  127  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38551776--38551847	28	2.6	29	73	10	69	20	9	12	56	1.64
38554558--38554767	104	2.0	104	100	0	420	27	5	25	40	1.78
38566707--38566754	18	2.8	18	80	20	59	18	10	12	58	1.62
38572647--38572909	40	6.6	40	87	3	316	26	28	20	24	1.99
38584455--38584488	16	2.1	17	88	5	52	76	11	0	11	1.02
38598840--38598903	33	2.1	28	77	22	76	34	6	20	39	1.78
38602287--38602363	24	3.2	24	66	23	70	37	10	19	32	1.86
38602283--38602382	49	2.0	49	100	0	200	35	12	20	33	1.89
38602295--38602371	24	3.2	24	66	23	70	35	11	22	31	1.90
38615025--38615209	79	2.3	81	84	7	236	24	22	27	25	2.00
38615026--38615209	40	4.6	40	83	9	216	24	22	27	25	2.00
38615026--38615242	79	2.7	79	81	7	201	25	22	27	24	2.00
38617720--38617750	16	1.9	16	100	0	62	19	12	35	32	1.90
38623373--38623405	17	1.9	17	93	0	57	36	21	18	24	1.95
38625155--38625221	6	11.2	6	100	0	134	50	16	0	32	1.45
38628554--38628605	27	1.9	27	92	0	86	23	21	15	40	1.91
38630694--38630745	27	1.9	27	84	7	70	11	21	1	65	1.34
38630753--38630845	18	5.3	17	80	10	91	8	17	0	74	1.06
38630709--38630832	6	20.0	6	70	9	79	8	19	0	70	1.18
38633510--38633581	33	2.2	33	87	0	99	31	12	20	34	1.90
38634491--38634542	14	3.3	15	84	12	61	5	17	3	73	1.19
38637952--38638002	10	5.1	10	75	17	52	27	13	31	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38637954--38638002	20	2.5	20	86	0	71	26	14	32	26	1.94
38639959--38640033	33	2.2	34	86	11	102	70	1	24	4	1.12
38640018--38640056	20	2.0	20	90	10	62	66	0	28	5	1.12
38640107--38640162	18	3.2	17	75	12	51	67	3	21	7	1.30
38650473--38650538	23	2.9	23	86	0	96	18	12	27	42	1.85
38652335--38652811	236	2.0	234	87	1	686	18	33	9	39	1.82
38654178--38654268	35	2.6	35	84	3	103	24	13	18	43	1.85
38659478--38659545	10	7.0	9	81	15	73	32	14	27	25	1.95
38659478--38659545	30	2.3	29	90	5	109	32	14	27	25	1.95
38660241--38660320	41	2.0	41	82	0	97	23	18	25	32	1.97
38660255--38660347	41	2.3	41	81	3	107	24	18	26	30	1.98
38667831--38667910	41	2.0	41	89	0	124	25	18	22	33	1.97
38667831--38667948	41	2.9	41	84	2	121	27	18	23	30	1.98
38668062--38668156	32	3.0	32	67	20	81	29	6	18	45	1.74
38668961--38669180	39	5.6	39	91	2	343	45	20	2	32	1.63
38669009--38669073	17	3.5	17	69	25	51	47	23	0	29	1.52
38672846--38672913	20	3.5	20	75	16	79	41	19	25	14	1.89
38672838--38672917	40	2.0	40	87	2	117	41	20	25	13	1.88
38676925--38676963	20	2.0	20	90	10	62	35	5	0	58	1.20
38676926--38676969	20	2.2	20	84	8	54	43	4	0	52	1.22
38681456--38681485	15	2.0	15	93	0	51	43	16	33	6	1.74
38688723--38688755	17	2.0	17	88	5	50	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38692004--38692096	45	2.1	45	100	0	186	54	6	21	17	1.64
38693919--38693955	13	2.7	14	87	8	58	27	0	8	64	1.21
38698129--38698450	41	7.9	41	77	8	262	20	20	25	34	1.96
38705206--38705397	50	3.9	50	80	3	201	30	22	27	20	1.98
38714867--38714898	14	2.3	14	94	0	55	15	15	0	68	1.21
38737706--38737768	25	2.5	24	80	14	74	6	17	0	76	0.99
38740464--38740502	20	2.0	20	90	10	62	15	23	5	56	1.59
38744022--38744055	17	2.1	16	88	5	50	55	11	2	29	1.50
38744012--38744055	16	2.8	16	80	12	56	54	11	4	29	1.56
38749777--38749801	11	2.3	11	100	0	50	28	0	8	64	1.22
38751041--38751122	24	3.4	24	78	8	76	24	21	19	34	1.97
38762056--38762080	12	2.1	12	100	0	50	40	36	0	24	1.55
38763576--38763633	30	1.9	30	82	6	73	5	22	0	72	1.04
38763587--38763693	6	18.0	6	69	16	62	4	20	0	73	1.06
38763577--38763685	42	2.6	41	83	13	125	6	21	0	71	1.14
38763587--38763693	24	4.5	23	74	18	87	4	20	0	73	1.06
38768742--38768824	35	2.3	36	85	6	107	36	28	3	31	1.75
38785301--38785485	79	2.3	82	83	7	229	24	27	22	24	2.00
38785282--38785485	40	5.1	40	81	8	229	24	27	22	25	2.00
38789939--38789963	11	2.3	11	100	0	50	16	32	16	36	1.90
38790833--38790899	10	6.6	10	73	10	55	35	10	22	31	1.88
38800059--38800389	47	7.1	47	93	1	549	32	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38800241--38800315	22	3.3	22	63	7	60	30	10	29	29	1.91
38800508--38800586	37	2.1	37	88	4	115	25	18	30	25	1.98
38802437--38802539	43	2.4	43	100	0	206	22	15	35	26	1.94
38802521--38802594	29	2.6	29	89	4	105	25	16	32	25	1.96
38802984--38803259	40	6.9	40	92	0	455	25	22	27	25	2.00
38806925--38807257	47	7.1	47	93	0	540	32	9	30	28	1.88
38807376--38807454	37	2.1	37	88	4	115	25	18	30	25	1.98
38809984--38810032	20	2.7	18	79	14	55	26	2	0	71	0.97
38809986--38810027	20	2.2	19	86	4	57	23	2	0	73	0.94
38809985--38810041	25	2.3	24	82	8	69	24	1	1	71	1.04
38812248--38812340	47	2.0	45	95	4	168	43	15	12	29	1.83
38816393--38816524	50	2.6	51	78	3	149	38	12	13	35	1.82
38826958--38827125	27	6.3	27	86	4	180	39	19	20	20	1.92
38826967--38827121	81	1.9	81	84	7	208	39	19	20	20	1.93
38827487--38827570	30	2.9	30	92	3	136	25	26	22	26	2.00
38831780--38831828	25	2.0	25	83	0	62	69	4	4	22	1.23
38834560--38834859	27	11.1	27	83	5	349	42	18	18	20	1.90
38834560--38834859	54	5.6	54	86	3	392	42	18	18	20	1.90
38838331--38838457	55	2.3	55	86	0	173	26	33	18	22	1.96
38845520--38845557	20	1.9	20	88	0	58	18	34	0	47	1.49
38845534--38845572	16	2.4	16	82	0	51	17	25	2	53	1.56
38855368--38855396	14	2.0	15	93	6	51	0	41	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38861447--38861631	79	2.3	82	83	7	229	24	27	22	24	2.00
38861428--38861631	40	5.1	40	81	8	229	24	27	22	25	2.00
38869396--38869580	79	2.3	82	83	7	229	24	27	22	24	2.00
38869377--38869580	40	5.1	40	81	8	229	24	27	22	25	2.00
38871867--38871924	25	2.3	25	84	0	71	31	22	17	29	1.96
38881640--38881820	28	6.5	28	85	0	238	29	22	25	22	1.99
38881914--38881988	26	2.8	26	81	2	87	37	24	21	17	1.94
38882144--38882277	27	5.0	27	78	0	124	17	20	20	41	1.90
38882153--38882277	54	2.3	54	83	2	153	16	21	18	43	1.88
38891707--38891745	20	2.0	20	84	0	51	53	7	12	25	1.65
38894553--38895079	291	1.8	287	86	0	705	33	31	12	22	1.92
38902208--38902269	30	2.1	30	93	0	106	27	30	3	38	1.72
38917864--38917916	4	13.2	4	100	0	106	24	0	26	49	1.51
38924575--38924760	95	2.0	94	81	1	219	41	20	11	25	1.87
38938928--38938962	2	17.5	2	100	0	70	48	0	51	0	1.00
38942533--38942569	13	2.7	14	87	8	58	27	0	2	70	1.01
38947333--38947380	22	2.2	22	96	0	87	37	6	27	29	1.81
38956564--38956861	40	7.6	39	84	7	338	24	20	28	26	1.99
38956564--38956861	115	2.5	119	83	4	354	24	20	28	26	1.99
38956642--38956896	79	3.3	76	83	8	302	25	20	28	25	1.99
38964546--38964808	40	6.6	40	87	3	316	24	20	28	26	1.99
38964585--38964843	80	3.3	80	84	3	238	25	20	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38966826--38966979	42	3.7	41	77	9	116	29	28	18	23	1.97
38966824--38966979	41	3.7	41	76	13	149	30	28	17	23	1.97
38975846--38975989	27	5.3	27	78	1	128	36	16	20	26	1.93
38975876--38976018	54	2.6	54	84	4	173	37	15	19	27	1.92
38975872--38976023	27	5.6	27	75	6	139	36	14	20	28	1.92
38975846--38976029	81	2.3	81	82	5	221	35	17	19	27	1.94
38976091--38976147	24	2.4	24	84	0	69	17	10	26	45	1.81
38976272--38976327	26	2.2	26	86	0	76	14	21	30	33	1.93
38976316--38976410	32	3.0	31	80	6	93	24	22	15	37	1.93
38976639--38976727	46	1.9	46	81	4	108	22	19	20	38	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218