genome.fa.s23.2.7.7.80.10.50.1000.198.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  198  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58584082--58584125	20	2.2	20	91	0	70	11	31	9	47	1.71
58587087--58587146	29	2.0	31	83	6	79	50	5	1	43	1.34
58590825--58590865	21	2.0	21	85	9	57	53	4	7	34	1.50
58593145--58593185	20	2.0	20	86	9	57	43	2	2	51	1.28
58593184--58593219	19	1.9	19	88	5	56	38	2	8	50	1.47
58593366--58593405	14	2.6	16	76	15	57	40	12	12	35	1.81
58596939--58596975	17	2.2	17	90	4	58	27	0	0	72	0.84
58599626--58599714	31	2.9	31	70	6	81	46	17	2	33	1.61
58602164--58602219	29	1.9	29	88	0	85	33	1	7	57	1.37
58604125--58604158	12	2.9	12	91	4	52	61	8	5	23	1.47
58607581--58607613	15	2.2	15	94	0	57	48	12	3	36	1.56
58608552--58608652	30	3.4	30	75	17	104	36	2	0	60	1.12
58609470--58609572	31	3.4	30	70	20	88	45	8	21	24	1.80
58609386--58609573	59	3.1	59	80	6	182	46	13	18	21	1.83
58609593--58609644	16	3.2	16	97	0	95	26	0	34	38	1.57
58609883--58609917	18	2.0	17	88	5	52	54	0	0	45	0.99
58610664--58610693	13	2.3	13	100	0	60	60	13	6	20	1.55
58616293--58616320	6	4.7	6	100	0	56	0	0	67	32	0.91
58618855--58618880	7	3.7	7	100	0	52	53	0	0	46	1.00
58619004--58619034	7	4.4	7	95	0	53	64	0	0	35	0.94
58628157--58628191	16	2.2	16	94	0	61	45	40	0	14	1.45
58635106--58635170	33	1.9	33	81	9	78	32	7	1	58	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58647193--58647254	30	2.1	29	91	8	99	54	4	0	40	1.22
58649315--58649345	16	1.9	16	100	0	62	77	0	6	16	0.97
58651422--58651464	20	2.2	20	95	0	77	48	13	6	30	1.69
58664698--58664853	42	3.7	41	75	17	158	24	18	26	30	1.98
58672022--58672177	42	3.7	41	75	17	158	24	18	26	30	1.98
58674337--58674367	4	7.8	4	92	0	53	74	3	0	22	0.96
58675202--58675247	24	1.9	24	95	0	83	13	15	21	50	1.78
58678183--58678239	11	5.2	11	80	0	69	66	10	5	17	1.40
58678183--58678250	22	3.1	22	78	0	82	64	11	7	16	1.47
58679367--58679396	15	2.0	15	93	0	51	36	6	0	56	1.26
58680073--58680180	53	2.0	53	90	0	171	37	13	9	38	1.77
58686781--58686937	41	3.7	43	77	13	123	24	19	26	29	1.98
58689939--58689983	23	1.9	24	90	4	74	11	15	22	51	1.75
58692888--58692943	11	5.1	11	80	0	67	66	10	5	17	1.41
58694764--58694869	53	2.0	53	87	3	153	37	13	9	39	1.77
58698193--58698275	42	2.0	43	88	7	125	42	18	6	33	1.74
58718024--58718127	48	2.2	48	96	0	190	39	15	16	28	1.89
58732152--58732196	14	3.2	14	80	0	54	46	33	0	20	1.51
58733051--58733159	43	2.7	40	76	16	107	55	1	4	38	1.31
58735472--58735518	24	2.0	24	91	4	78	31	6	17	44	1.73
58735923--58735979	27	2.1	27	84	9	73	68	3	28	0	1.06
58736881--58736933	22	2.4	22	81	6	72	11	20	16	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58740444--58740636	99	1.9	99	84	2	253	32	14	23	29	1.94
58741172--58741217	18	2.5	19	92	3	76	32	0	4	63	1.14
58742396--58742588	105	1.8	104	84	5	264	46	12	8	32	1.71
58745784--58746008	45	5.0	45	71	9	147	29	16	18	36	1.92
58745813--58746011	44	4.5	44	75	4	175	30	16	18	35	1.93
58745763--58746008	89	2.8	89	83	3	282	29	16	18	35	1.93
58750390--58750451	31	2.0	31	93	0	106	27	22	12	37	1.91
58758077--58758174	50	1.9	50	81	6	115	64	1	8	26	1.28
58759051--58759114	32	2.0	32	93	0	110	50	9	12	28	1.71
58765910--58765978	31	2.3	31	84	2	86	40	8	10	40	1.70
58769135--58769163	9	3.2	9	100	0	58	58	0	0	41	0.98
58777482--58777521	18	2.2	19	86	4	55	40	5	2	52	1.37
58777558--58777602	21	2.2	20	84	11	56	60	6	0	33	1.23
58780672--58780711	19	2.2	18	86	4	53	15	5	22	57	1.57
58782406--58782510	55	1.9	55	98	0	201	42	19	7	30	1.78
58783810--58784133	156	2.1	156	85	0	441	30	19	12	37	1.89
58786154--58786310	59	2.8	56	89	5	251	47	14	8	30	1.73
58787942--58788394	243	1.9	226	80	7	501	45	6	10	38	1.64
58793384--58793423	14	2.9	14	84	0	53	35	7	15	42	1.75
58793407--58793446	20	2.0	20	90	0	62	30	10	10	50	1.69
58793392--58793458	34	1.9	35	87	3	100	32	8	11	46	1.72
58797143--58797170	8	3.5	8	100	0	56	25	0	0	75	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58800813--58800968	41	3.8	41	81	0	177	27	16	26	30	1.96
58800813--58800968	82	1.9	82	82	0	195	27	16	26	30	1.96
58800813--58800997	82	2.2	82	79	2	192	28	15	25	30	1.96
58801499--58801533	14	2.5	14	90	9	54	22	0	45	31	1.53
58801775--58801821	21	2.2	21	84	0	58	25	0	40	34	1.56
58801782--58801812	14	2.2	14	94	0	53	22	0	41	35	1.54
58809378--58809403	8	3.2	8	100	0	52	38	11	0	50	1.39
58814773--58814802	15	2.0	15	100	0	60	46	6	6	40	1.56
58820622--58820690	34	2.0	34	100	0	138	50	8	11	28	1.68
58823545--58823588	19	2.3	19	80	7	54	34	0	4	61	1.16
58824410--58824467	27	2.2	26	87	3	80	25	3	1	68	1.14
58824474--58824510	19	1.9	19	88	0	56	32	0	8	59	1.27
58824501--58824548	20	2.4	20	89	0	69	37	2	8	52	1.44
58824632--58824662	9	3.4	9	95	0	53	32	3	9	54	1.49
58831593--58831670	37	2.1	37	100	0	156	34	29	8	26	1.87
58831970--58832090	54	2.3	53	84	7	147	43	0	31	23	1.60
58833360--58833429	30	2.4	29	79	9	70	55	8	2	32	1.45
58839885--58839945	28	2.1	27	82	8	68	60	4	3	31	1.34
58839903--58839965	33	1.9	33	87	6	92	60	3	3	33	1.28
58840132--58840175	17	2.6	17	85	3	63	47	0	11	40	1.39
58840299--58840337	3	13.0	3	94	0	69	66	2	0	30	1.05
58840644--58840722	22	3.7	21	74	16	54	40	16	5	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58840680--58840731	21	2.6	20	90	6	79	36	15	9	38	1.80
58841668--58841729	31	2.1	30	82	8	81	33	3	4	58	1.36
58843353--58843402	16	3.2	16	70	18	52	52	0	0	48	1.00
58843334--58843399	29	2.2	30	86	10	91	57	0	0	42	0.98
58843343--58843420	29	2.9	26	78	17	79	56	0	1	42	1.07
58843446--58843477	13	2.4	14	85	15	50	43	0	0	56	0.99
58845193--58845246	28	2.0	27	85	10	74	27	3	0	68	1.06
58849729--58849817	13	6.6	14	80	7	76	41	4	2	51	1.34
58849725--58849877	27	5.7	26	82	8	139	37	2	3	55	1.32
58849741--58849877	40	3.4	40	86	7	172	37	2	4	55	1.32
58849725--58849868	67	2.1	67	98	0	279	38	2	3	55	1.31
58852289--58852331	9	4.8	9	91	0	68	34	16	34	13	1.88
58852534--58852592	30	2.0	30	100	0	118	37	10	22	30	1.87
58860087--58860143	9	6.2	9	84	11	80	38	29	10	21	1.87
58860085--58860151	20	3.5	20	84	12	104	40	29	8	20	1.83
58860113--58860155	11	4.2	11	85	14	65	46	27	6	18	1.75
58862505--58862538	16	2.1	16	89	10	52	32	2	0	64	1.08
58863363--58863388	6	4.3	6	100	0	52	15	0	0	84	0.62
58864985--58865045	31	2.0	31	90	0	95	14	21	29	34	1.93
58889200--58889235	3	12.0	3	87	0	54	61	2	36	0	1.11
58891392--58891445	20	2.7	20	77	11	56	35	11	9	44	1.72
58891485--58891579	40	2.4	41	82	12	117	38	14	8	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58891485--58891583	20	4.9	20	76	11	105	38	14	10	37	1.79
58891586--58891632	20	2.3	20	88	0	67	29	8	19	42	1.80
58891695--58891938	20	12.4	20	71	9	153	36	9	13	40	1.76
58893883--58893920	17	2.2	17	86	9	51	28	2	0	68	1.03
58893899--58893946	20	2.4	19	80	10	51	25	4	2	68	1.18
58894134--58894200	20	3.3	21	75	8	77	29	4	1	64	1.22
58894143--58894205	19	3.2	19	73	13	65	25	4	1	68	1.18
58894162--58894226	28	2.3	28	78	19	73	26	4	1	67	1.18
58894914--58894967	27	2.0	27	100	0	108	25	29	22	22	1.99
58895202--58895241	20	2.0	20	85	0	53	27	0	2	70	1.01

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218