genome.fa.s23.2.7.7.80.10.50.1000.177.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  177  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53350597--53350631	16	2.2	16	89	0	52	31	31	5	31	1.81
53353757--53353809	21	2.5	21	84	9	63	26	0	7	66	1.18
53354615--53354657	9	4.6	9	83	11	59	65	2	0	32	1.06
53354617--53354683	20	3.3	20	72	24	61	64	2	1	31	1.18
53354615--53354676	10	6.4	10	80	9	58	64	1	1	32	1.13
53354529--53354688	28	5.8	27	68	16	87	60	3	0	35	1.17
53354885--53355007	10	13.2	10	65	20	52	33	0	2	63	1.13
53354887--53355012	9	13.7	9	67	11	67	32	0	3	63	1.16
53354944--53354996	19	2.9	19	81	13	58	37	0	0	62	0.96
53354964--53355007	19	2.4	18	96	3	79	27	0	0	72	0.85
53354885--53355012	37	3.5	37	74	4	123	32	0	3	63	1.16
53355693--53355736	21	2.0	21	86	4	61	63	2	11	22	1.38
53356244--53356287	14	3.1	15	87	6	56	9	4	13	72	1.24
53356316--53356340	11	2.3	11	100	0	50	32	0	0	68	0.90
53358422--53358455	17	1.9	18	88	5	52	50	8	23	17	1.74
53367970--53368011	14	2.9	14	82	3	57	50	0	19	30	1.48
53395317--53395346	16	1.9	15	93	6	51	16	0	0	83	0.65
53396246--53396324	26	3.6	22	77	19	60	55	1	0	43	1.07
53399894--53399926	15	2.2	15	89	10	50	51	0	0	48	1.00
53399921--53399956	18	1.9	18	88	5	54	58	2	0	38	1.13
53409977--53410021	16	2.8	16	77	12	56	62	0	0	37	0.96
53410673--53410716	21	2.1	21	88	12	65	52	0	2	45	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53411204--53411263	30	1.9	32	87	12	90	46	0	3	50	1.18
53413039--53413088	10	5.6	9	77	13	50	62	0	2	36	1.07
53414549--53414979	50	8.7	49	70	6	269	22	19	24	33	1.97
53414504--53414984	99	4.9	99	88	0	669	22	19	24	33	1.97
53414505--53414984	197	2.4	198	88	1	714	22	19	24	33	1.97
53439093--53439158	28	2.3	28	80	12	71	25	7	7	59	1.52
53442279--53442319	20	2.0	20	85	0	55	29	2	0	68	1.03
53443072--53443099	14	2.0	14	100	0	56	14	14	0	71	1.15
53443690--53443743	3	17.3	3	78	14	56	35	1	3	59	1.26
53443692--53443743	15	3.5	15	84	10	63	34	1	3	59	1.27
53443818--53443890	25	2.8	25	74	17	69	30	5	0	64	1.16
53449846--53450299	44	10.3	44	72	9	309	29	16	25	27	1.97
53449820--53450160	89	3.9	89	91	3	478	29	18	24	28	1.98
53451932--53451982	3	16.3	3	80	15	59	35	1	1	60	1.19
53458495--53458528	12	2.8	12	95	4	59	64	0	2	32	1.08
53460129--53460248	44	2.7	44	86	0	150	30	20	19	29	1.97
53460169--53460496	143	2.3	143	83	1	406	27	21	20	30	1.98
53461310--53461367	30	1.9	30	89	0	89	41	3	24	31	1.71
53461579--53461610	13	2.5	13	94	0	55	31	0	12	56	1.37
53461705--53461946	50	4.7	50	84	4	288	26	23	29	20	1.99
53461705--53461954	100	2.4	103	87	6	355	26	23	29	21	1.99
53463269--53463595	143	2.3	143	88	1	458	26	20	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53467657--53467696	19	2.1	19	86	9	55	42	12	22	22	1.87
53471769--53471830	31	2.1	30	84	6	81	37	9	11	41	1.74
53476039--53476073	16	2.2	16	89	0	52	54	0	5	40	1.24
53480777--53480846	22	3.0	22	67	18	52	31	7	2	58	1.40
53481074--53481110	3	12.7	3	94	5	67	32	0	0	67	0.91
53490010--53490040	5	6.0	5	92	7	53	80	0	0	19	0.71
53490010--53490039	11	2.8	11	95	5	53	83	0	0	16	0.65
53490010--53490040	16	1.9	16	100	0	62	80	0	0	19	0.71
53496293--53496340	9	5.4	9	85	9	64	31	2	0	66	1.03
53496480--53496517	17	2.1	17	90	9	58	31	0	0	68	0.90
53496524--53496570	23	2.0	23	91	0	76	29	12	25	31	1.93
53497661--53497800	42	3.3	42	91	4	228	25	22	20	32	1.98
53497787--53497813	13	2.1	13	100	0	54	37	33	22	7	1.82
53497743--53497852	55	2.0	55	90	0	175	30	24	20	23	1.98
53497703--53497897	97	2.0	97	85	4	259	28	22	22	27	1.99
53497659--53497937	139	2.0	139	82	0	342	27	21	21	29	1.99
53497798--53498010	42	5.0	43	78	6	186	28	21	21	29	1.98
53500531--53501032	251	2.0	251	92	1	828	33	20	15	30	1.93
53501697--53501789	39	2.4	40	83	8	129	48	21	2	27	1.62
53504451--53504484	16	2.1	17	88	5	52	44	8	2	44	1.50
53505099--53505150	18	2.9	18	94	0	86	5	19	13	61	1.52
53505099--53505163	18	3.6	18	87	4	69	6	20	10	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53505566--53505651	27	3.0	30	88	8	108	61	0	1	37	1.04
53505566--53505617	10	5.1	10	75	13	52	55	0	1	42	1.10
53505566--53505643	39	2.0	40	90	7	124	60	0	1	38	1.05
53505613--53505659	9	5.1	9	75	14	51	72	0	0	27	0.85
53505566--53505616	9	4.9	11	79	15	56	56	0	1	41	1.10
53505566--53505699	69	2.0	68	88	4	198	63	0	2	33	1.12
53508792--53508835	14	2.9	15	81	18	56	52	2	0	45	1.13
53510003--53510167	43	3.8	43	82	3	206	29	27	17	25	1.97
53510003--53510167	86	1.9	86	87	2	242	29	27	17	25	1.97
53513566--53513590	13	1.9	13	100	0	50	68	0	32	0	0.90
53513865--53513945	8	9.6	8	80	11	56	34	4	0	60	1.18
53513865--53513934	9	8.1	9	75	13	58	31	5	0	62	1.18
53513878--53513934	9	6.4	9	88	8	73	31	7	0	61	1.23
53513888--53513939	17	3.1	16	84	13	61	34	7	0	57	1.27
53513898--53513945	16	2.9	17	87	6	64	37	6	0	56	1.25
53514031--53514243	83	2.6	83	84	11	255	45	24	1	29	1.62
53514104--53514243	76	1.9	76	90	1	228	45	25	0	28	1.58
53514253--53514292	21	1.9	21	85	10	55	30	45	0	25	1.54
53514387--53514448	7	9.3	6	75	25	54	30	45	1	22	1.62
53514388--53514451	21	3.2	20	77	20	62	32	42	1	23	1.64
53514404--53514457	14	3.9	14	90	0	72	29	44	1	24	1.64
53514407--53514457	7	7.3	7	80	8	59	31	41	1	25	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53514251--53514576	164	2.0	164	90	3	521	38	31	0	29	1.62
53514610--53514642	14	2.3	15	94	5	59	36	33	0	30	1.58
53515195--53516673	147	10.2	147	92	4	2517	23	16	15	44	1.85
53516676--53517030	114	3.1	115	85	3	495	28	25	21	23	1.99
53517144--53517175	3	10.7	3	93	0	55	68	28	3	0	1.04
53517371--53517414	23	2.0	22	90	4	70	56	2	6	34	1.38
53517504--53517579	36	2.1	38	83	11	97	52	1	7	38	1.39
53517545--53517612	30	2.2	30	76	7	75	48	5	10	35	1.61
53517877--53517925	23	2.1	23	88	0	71	63	12	0	24	1.29
53518144--53518198	19	2.7	21	86	11	87	36	12	10	40	1.79
53519008--53519037	8	3.8	8	100	0	60	66	0	0	33	0.92
53521234--53521282	16	3.0	16	72	3	53	32	6	0	61	1.21
53520882--53521468	154	3.9	150	84	6	738	31	11	6	50	1.64
53521692--53521944	10	25.0	10	73	13	153	1	28	0	69	0.95
53521712--53521769	23	2.7	22	77	15	59	0	37	0	62	0.96
53521744--53521951	4	48.5	4	75	24	121	1	27	0	70	0.96
53521694--53521953	34	7.6	33	78	10	215	1	29	0	69	0.96
53521764--53521965	87	2.3	87	95	1	361	1	28	0	69	1.00
53523409--53523433	2	12.5	2	100	0	50	52	0	0	48	1.00
53523629--53523748	41	2.9	41	93	0	204	31	24	19	25	1.98
53525809--53525847	21	1.9	20	85	15	53	43	2	0	53	1.14
53528483--53528517	19	1.9	18	88	11	54	65	11	17	5	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53542649--53542714	32	2.1	32	97	0	123	24	27	9	39	1.85
53559598--53559692	50	1.9	50	89	4	147	35	7	9	47	1.64
53560474--53560541	27	2.6	27	76	23	81	42	1	1	54	1.18
53560648--53561365	19	35.3	19	66	25	161	29	0	13	56	1.41
53560691--53561075	61	6.3	61	81	11	432	29	0	12	57	1.39
53560673--53561015	80	4.3	80	78	14	416	29	0	12	57	1.37
53560753--53561179	101	4.2	101	73	13	426	29	0	12	57	1.38
53560906--53561002	27	3.3	27	70	18	86	25	0	13	60	1.33
53560944--53561276	61	5.9	55	75	14	181	30	0	12	57	1.40
53560994--53561244	84	3.1	82	90	6	418	29	0	12	56	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218