genome.fa.s23.2.7.7.80.10.50.1000.148.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  148  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45030097--45030589	132	3.7	132	90	1	749	26	24	19	29	1.99
45030097--45030589	263	1.9	263	89	1	774	26	24	19	29	1.99
45030519--45030644	44	2.9	44	82	4	155	27	25	18	28	1.98
45031881--45031964	43	2.0	43	95	0	150	13	27	17	41	1.87
45044307--45044387	26	3.0	27	76	7	74	34	19	23	22	1.96
45064449--45064474	12	2.2	12	100	0	52	7	15	30	46	1.74
45064463--45064554	40	2.3	38	80	12	96	30	18	26	25	1.98
45064481--45064570	40	2.2	40	84	11	114	32	22	24	21	1.98
45064543--45064970	114	3.8	114	89	1	646	24	22	25	28	2.00
45064543--45064970	227	1.9	228	90	1	680	24	22	25	28	2.00
45065259--45065324	22	3.1	22	76	8	57	24	1	42	31	1.64
45065741--45065832	44	2.1	44	89	0	139	36	11	14	36	1.83
45065875--45066103	101	2.3	101	93	1	408	41	12	13	31	1.82
45065988--45066244	141	1.8	141	97	0	487	43	14	12	29	1.83
45065786--45066384	242	2.5	240	91	3	951	41	13	14	30	1.84
45070515--45070680	43	3.9	42	79	8	124	26	16	26	30	1.96
45070536--45070680	43	3.4	43	82	3	132	28	17	26	27	1.97
45070561--45070714	43	3.6	43	86	1	184	27	18	28	25	1.98
45073057--45073096	20	2.0	20	100	0	80	45	15	20	20	1.86
45075282--45075333	27	2.0	27	88	3	79	57	1	5	34	1.33
45075492--45075533	15	2.9	15	86	10	52	57	2	0	40	1.12
45075492--45075522	15	2.1	15	94	5	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45078029--45078119	9	10.1	9	69	21	57	32	1	3	62	1.18
45082192--45082225	3	11.3	3	93	0	50	32	5	32	29	1.81
45090583--45090624	19	2.2	20	86	4	59	11	35	0	52	1.38
45091572--45091596	5	5.0	5	100	0	50	20	0	0	80	0.72
45096541--45096645	53	2.0	53	88	3	158	47	16	8	27	1.75
45101277--45101339	18	3.2	19	73	13	56	53	6	0	39	1.26
45108214--45108260	24	2.0	24	83	8	60	42	10	10	36	1.74
45113341--45113373	17	1.9	17	93	0	57	24	24	6	45	1.75
45119892--45119978	21	4.1	21	75	7	68	40	24	18	17	1.91
45127752--45127885	23	6.0	23	81	6	125	39	22	18	19	1.92
45135757--45135807	23	2.2	23	89	0	75	41	21	7	29	1.81
45147758--45147802	19	2.3	20	81	11	58	31	2	2	64	1.18
45148852--45148876	7	3.6	7	100	0	50	16	28	0	56	1.41
45152758--45152795	15	2.5	16	83	12	53	36	0	13	50	1.42
45160553--45160634	37	2.2	37	89	2	121	14	9	32	42	1.79
45166108--45166188	26	3.2	25	73	18	69	32	8	14	44	1.76
45166247--45166342	51	1.9	51	84	2	131	30	14	23	31	1.95
45174984--45175113	64	2.0	64	98	0	251	40	14	16	28	1.88
45177640--45177682	22	2.0	22	85	0	59	51	16	32	0	1.45
45178334--45178407	27	2.8	26	91	6	121	36	2	0	60	1.11
45178334--45178437	27	4.0	26	85	8	97	40	1	0	57	1.10
45178398--45178437	13	3.2	12	86	10	53	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45178686--45178735	26	1.9	26	91	0	82	38	26	4	32	1.75
45178686--45178738	13	4.1	13	80	0	61	37	26	5	30	1.79
45188211--45188285	37	2.0	37	92	5	125	22	32	12	33	1.91
45196217--45196251	18	1.9	18	88	0	52	77	2	5	14	1.07
45203014--45203077	22	2.9	22	79	4	76	23	18	12	45	1.84
45212576--45212724	67	2.2	71	86	4	216	48	12	9	30	1.72
45217604--45217636	13	2.7	13	90	9	52	36	12	15	36	1.84
45218749--45219394	51	12.7	50	78	4	571	28	14	27	29	1.95
45218745--45219381	102	6.3	102	91	1	931	28	14	27	29	1.95
45226506--45226538	16	1.9	18	88	11	52	33	9	0	57	1.30
45227178--45227616	219	2.0	219	94	0	763	27	17	24	30	1.97
45228491--45228547	17	3.1	19	77	12	64	42	7	17	33	1.76
45229579--45229613	17	2.1	17	88	0	52	45	2	5	45	1.41
45230453--45230483	14	2.3	13	94	5	53	51	0	9	38	1.35
45231658--45231712	25	2.1	27	80	12	62	40	1	5	52	1.35
45233010--45233053	2	22.0	2	90	0	70	0	0	45	54	0.99
45245002--45245050	16	3.1	16	80	16	57	59	4	0	36	1.17
45245937--45245964	7	4.0	7	100	0	56	14	0	0	85	0.59
45247089--45247135	15	3.2	15	82	11	53	38	8	6	46	1.60
45250725--45250778	25	2.2	25	89	0	81	62	7	9	20	1.48
45253377--45253438	31	2.0	31	100	0	124	45	16	9	29	1.79
45253585--45253715	50	2.6	52	79	6	151	37	12	15	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45280941--45280995	24	2.2	24	84	9	67	40	27	3	29	1.73
45286301--45286334	16	2.1	16	88	0	50	79	0	17	2	0.86
45293465--45293537	35	2.1	36	94	2	130	31	26	5	36	1.79
45295726--45295830	33	3.4	29	79	11	104	32	3	14	49	1.61
45296153--45296228	36	2.1	36	87	4	109	32	10	19	36	1.86
45296153--45296240	36	2.4	36	86	3	106	32	9	18	39	1.82
45296851--45296949	17	5.8	17	70	0	63	26	11	19	43	1.84
45298581--45298614	14	2.4	14	90	0	50	38	0	11	50	1.39
45298728--45298778	20	2.5	21	78	9	61	54	0	7	37	1.29
45298812--45298901	3	28.7	3	77	14	76	63	1	5	30	1.24
45298813--45298901	18	5.4	17	74	16	89	62	1	5	30	1.25
45300189--45300290	43	2.4	43	86	0	141	24	25	15	34	1.95
45300674--45300878	44	4.7	43	79	12	179	30	22	19	27	1.98
45300905--45301102	44	4.5	44	76	6	186	24	25	19	30	1.98
45300910--45301102	89	2.2	89	89	0	287	24	25	19	29	1.99
45301114--45301583	90	5.2	90	89	1	665	30	26	16	27	1.97
45301114--45301584	45	10.5	45	84	5	596	30	26	16	27	1.97
45303539--45303572	12	2.8	12	90	0	50	67	0	0	32	0.91
45307868--45307913	17	2.5	19	82	10	60	54	0	2	43	1.12
45307781--45307892	52	2.2	50	78	12	118	51	4	4	39	1.42
45308353--45308389	18	2.0	18	89	5	56	35	0	0	64	0.94
45312705--45312752	18	2.7	17	81	9	60	41	4	16	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45313039--45313095	29	2.0	29	96	0	105	47	3	12	36	1.58
45314248--45314297	14	3.6	14	74	12	50	46	0	4	50	1.20
45314279--45314328	6	8.7	6	77	14	52	50	2	0	48	1.12
45314279--45314328	11	4.3	12	78	12	52	50	2	0	48	1.12
45315581--45315611	3	10.3	3	100	0	62	35	0	0	64	0.94
45318051--45318166	34	3.4	34	92	0	196	40	26	20	12	1.88
45319172--45319218	24	2.0	24	91	0	76	40	4	2	53	1.32
45319416--45319460	23	1.9	23	81	4	54	22	6	8	62	1.48
45326517--45326555	20	2.0	20	89	0	60	74	5	2	17	1.12
45327995--45328133	19	7.0	20	67	20	62	58	1	4	35	1.27
45327996--45328144	9	15.2	9	69	19	61	58	1	4	36	1.25
45328095--45328134	21	1.9	21	84	0	53	60	2	2	35	1.24
45328707--45328774	31	2.4	28	83	16	86	42	11	11	33	1.78
45328819--45328858	21	1.9	20	89	5	53	55	0	10	35	1.34
45328819--45328867	22	2.3	21	82	10	55	59	0	8	32	1.27
45329096--45329160	30	2.2	31	83	5	89	27	12	15	44	1.82
45330048--45330111	32	2.0	32	85	11	87	43	0	1	54	1.09
45344501--45344876	96	3.9	96	90	4	560	40	1	19	37	1.63
45344916--45345577	126	5.3	126	95	0	1121	34	17	19	27	1.95
45348845--45348906	21	3.0	21	74	9	63	8	20	41	29	1.81
45351503--45351569	35	1.9	35	87	3	100	32	8	13	44	1.75
45351518--45351557	20	2.0	20	85	0	53	30	10	12	47	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45355196--45355231	12	2.9	12	95	4	63	13	50	27	8	1.71
45356230--45356272	3	14.3	3	90	0	68	34	4	0	60	1.17
45364306--45364384	3	25.7	3	72	12	54	30	5	3	60	1.36
45364727--45364774	15	3.3	14	83	13	53	18	6	2	72	1.15
45365702--45365746	18	2.4	19	82	14	58	57	6	2	33	1.37
45386863--45386929	33	2.0	33	88	11	102	32	23	7	35	1.83
45397811--45397864	21	2.6	21	75	0	54	37	16	27	18	1.93
45397811--45397910	42	2.4	41	83	3	110	39	16	26	19	1.91
45400365--45400413	20	2.5	20	83	6	64	42	12	14	30	1.82
45403160--45403731	114	5.0	114	88	2	828	25	21	26	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218