genome.fa.s23.2.7.7.80.10.50.1000.176.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  176  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53199939--53200030	30	3.2	29	72	18	84	33	0	1	65	1.00
53199970--53200030	27	2.3	27	81	13	72	34	0	1	63	1.04
53201232--53201283	24	2.1	25	82	3	61	42	3	0	53	1.19
53201503--53201649	71	2.1	71	100	0	294	26	30	2	40	1.70
53205961--53206017	13	4.4	13	73	8	53	40	3	1	54	1.28
53205968--53206017	26	2.0	25	88	4	73	42	4	2	52	1.31
53206416--53206475	30	1.9	33	87	12	92	50	3	0	46	1.18
53207200--53207259	23	2.5	24	79	15	63	60	0	0	40	0.97
53207186--53207240	20	2.7	22	73	23	57	60	0	0	40	0.97
53210044--53210083	6	6.5	6	85	2	53	32	27	20	20	1.97
53210044--53210079	18	2.0	18	94	0	63	30	27	19	22	1.98
53216710--53216941	109	2.1	111	84	5	310	25	18	24	32	1.97
53217097--53217122	12	2.2	12	100	0	52	7	7	7	76	1.15
53220036--53220149	22	5.2	22	68	12	90	50	9	1	37	1.45
53220036--53220187	44	3.5	44	95	0	259	50	10	1	37	1.48
53220487--53220553	18	3.8	18	86	7	93	62	0	13	23	1.30
53220474--53220560	35	2.5	35	89	9	133	60	0	14	24	1.34
53220649--53220700	23	2.2	24	89	3	79	53	0	23	23	1.46
53220649--53220724	12	6.5	11	78	13	64	53	0	21	25	1.45
53222254--53222381	58	2.2	58	88	2	186	50	13	8	27	1.70
53222312--53222500	90	2.1	90	88	2	272	52	12	5	28	1.62
53222312--53222547	90	2.6	90	83	3	244	54	12	5	27	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53227301--53227430	42	3.2	41	89	4	192	33	19	29	18	1.95
53227621--53227651	13	2.3	14	94	5	55	41	6	0	51	1.27
53235691--53235725	13	2.6	13	90	4	52	17	2	5	74	1.14
53247479--53247504	3	8.7	3	100	0	52	0	30	0	69	0.89
53249571--53250015	41	10.9	41	91	1	635	33	27	18	20	1.96
53250130--53250310	64	2.9	63	89	8	262	41	17	8	32	1.79
53253384--53254098	44	16.2	44	64	16	246	29	19	25	24	1.99
53253341--53254125	132	6.0	132	92	1	1235	29	19	26	24	1.98
53253341--53254125	265	3.0	263	93	1	1285	29	19	26	24	1.98
53253341--53254125	397	2.0	390	92	2	1311	29	19	26	24	1.98
53256026--53256060	13	2.6	13	90	4	52	17	2	5	74	1.14
53259301--53259813	155	3.3	154	78	8	423	30	10	22	37	1.87
53273567--53273730	42	4.0	41	83	2	202	24	23	20	31	1.98
53274046--53274116	21	3.4	21	90	0	106	2	45	19	32	1.65
53277703--53277779	16	4.9	16	69	20	63	36	18	12	32	1.89
53278257--53278523	148	1.8	148	84	0	372	38	22	15	23	1.92
53278994--53279069	15	5.1	15	72	9	50	42	27	2	27	1.69
53279131--53279171	21	1.9	22	85	5	57	43	36	2	17	1.62
53279717--53279768	21	2.5	21	75	6	52	59	17	0	23	1.37
53279936--53280780	229	3.7	226	80	4	922	27	24	18	29	1.98
53279850--53280781	115	8.2	114	82	4	983	27	23	18	30	1.98
53282642--53282684	8	5.5	8	80	5	52	53	6	0	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53282633--53282678	23	2.0	24	95	4	85	50	4	0	45	1.21
53284570--53284663	40	2.4	39	92	1	152	59	13	1	25	1.41
53285824--53285866	20	2.0	21	82	8	52	39	11	0	48	1.40
53285916--53285952	19	2.0	18	89	5	56	29	2	2	64	1.21
53290586--53291052	95	4.9	95	71	10	281	29	21	15	32	1.95
53290779--53291078	44	6.5	44	69	14	131	29	23	16	30	1.96
53291008--53291094	44	2.0	44	86	4	122	28	24	17	29	1.97
53290911--53291201	139	2.1	140	85	3	390	28	22	17	31	1.96
53302950--53303023	22	3.3	22	75	14	87	63	6	4	25	1.37
53306266--53306349	41	2.0	41	93	0	141	35	8	19	36	1.82
53310002--53310076	1	75.0	1	70	0	51	85	9	1	4	0.78
53310002--53310076	14	5.5	13	78	9	71	85	9	1	4	0.78
53310004--53310067	17	3.5	19	72	25	66	84	10	0	4	0.76
53310004--53310064	28	2.2	28	85	5	79	85	9	0	4	0.74
53310002--53310076	34	2.2	33	88	4	114	85	9	1	4	0.78
53310017--53310076	20	2.8	20	87	12	77	85	10	1	3	0.79
53310512--53310573	6	9.8	6	80	14	63	80	3	16	0	0.83
53310522--53310573	13	3.9	13	84	2	68	78	1	19	0	0.84
53310512--53310572	20	3.1	19	81	6	68	81	3	14	0	0.80
53310511--53310572	33	1.9	31	90	9	97	80	3	16	0	0.83
53310847--53310934	45	1.9	47	83	4	117	28	13	9	48	1.73
53311662--53311853	46	4.3	46	64	15	112	27	19	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53311662--53311933	134	2.0	134	96	0	499	27	19	23	29	1.98
53311933--53312054	40	2.9	41	78	8	140	35	22	19	22	1.96
53311938--53312063	44	3.0	42	72	15	125	33	22	21	23	1.97
53312022--53312451	134	3.3	131	79	4	479	30	20	22	26	1.98
53312414--53312531	40	2.8	41	81	8	141	35	22	19	22	1.96
53311699--53313922	481	4.7	481	88	2	3290	29	20	23	26	1.99
53312503--53312925	130	3.3	130	93	0	720	28	19	25	26	1.99
53312737--53313149	44	9.6	44	65	15	146	30	19	25	24	1.98
53312152--53313750	825	1.9	818	80	6	1863	30	20	23	26	1.98
53313369--53313486	40	2.8	41	82	8	150	34	23	19	22	1.96
53313458--53313880	130	3.3	129	92	0	702	28	19	25	26	1.99
53313697--53313876	44	4.1	44	66	12	111	28	18	27	25	1.98
53311833--53313922	955	2.2	955	97	0	3885	30	20	23	25	1.98
53315516--53315576	30	2.0	30	83	0	77	19	3	4	72	1.18
53316916--53316962	15	3.1	15	85	11	69	55	0	14	29	1.40
53318655--53318701	24	2.0	24	83	8	60	34	6	0	59	1.23
53318798--53318830	15	2.1	16	88	5	50	30	6	0	63	1.18
53319800--53319834	15	2.2	16	95	5	63	65	0	11	22	1.24
53321889--53321928	18	2.1	20	86	9	57	32	5	2	60	1.32
53323352--53323443	36	2.6	35	83	10	107	46	9	13	30	1.75
53323336--53323449	17	6.3	18	72	13	76	42	9	13	35	1.77
53323451--53323489	18	2.2	18	86	4	53	53	10	12	23	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53323928--53324028	9	12.2	8	86	7	107	0	14	0	85	0.61
53323952--53324031	1	80.0	1	77	0	79	0	11	0	88	0.51
53323952--53324029	9	8.7	9	94	5	124	0	11	0	88	0.52
53323931--53324030	26	3.6	27	82	13	123	0	14	0	86	0.58
53324311--53324361	15	3.6	14	86	10	68	0	19	0	80	0.71
53324306--53324364	24	2.7	22	85	15	70	1	18	0	79	0.81
53324307--53324343	19	1.9	20	88	5	58	2	13	0	83	0.74
53324314--53324364	12	4.4	12	80	9	61	0	21	0	78	0.75
53324306--53324343	20	1.9	20	89	10	60	2	13	0	84	0.73
53324311--53324364	9	6.2	9	79	16	53	0	20	0	79	0.73
53324323--53324365	15	3.0	15	93	6	72	0	23	0	76	0.78
53324729--53324867	29	4.8	29	77	14	160	46	5	17	30	1.71
53324729--53324863	59	2.3	58	85	11	177	46	5	17	30	1.71
53327977--53328285	46	7.2	45	80	15	359	34	14	20	29	1.93
53328013--53328167	36	4.0	36	79	15	184	36	14	20	28	1.92
53327977--53328285	82	3.7	82	90	4	440	34	14	20	29	1.93
53327977--53328302	128	2.6	125	73	21	339	34	14	22	28	1.93
53330251--53330380	30	4.4	30	76	9	115	31	20	6	42	1.76
53330776--53330826	26	2.0	26	84	3	68	66	0	27	5	1.14
53330937--53330974	10	3.5	11	86	13	53	78	0	21	0	0.74
53330927--53330974	20	2.3	21	82	13	64	77	0	22	0	0.78
53330937--53330987	11	4.5	11	80	9	57	80	0	17	1	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53332812--53332879	16	4.2	16	94	0	118	25	0	35	39	1.56
53333115--53333149	18	2.0	17	88	5	52	54	0	0	45	0.99
53333228--53333269	16	2.6	17	82	17	54	54	0	0	45	0.99
53333098--53333321	120	1.9	119	94	2	389	48	6	1	43	1.37
53333323--53333404	26	3.0	27	75	12	87	52	2	1	43	1.22
53336471--53336580	33	3.3	33	79	11	127	32	9	15	42	1.78
53336527--53336629	51	2.0	51	100	0	206	29	7	17	45	1.76
53339903--53340048	31	4.7	31	85	0	186	43	16	8	31	1.79
53339903--53340068	62	2.7	62	82	4	167	43	16	7	31	1.76
53339909--53340083	93	1.9	93	79	4	201	44	14	7	33	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218