genome.fa.s23.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  39  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12214876--12215036	58	3.0	51	86	13	243	44	19	7	29	1.78
12214982--12215092	33	3.4	34	82	10	115	43	17	8	31	1.78
12218133--12218219	28	3.1	28	73	17	83	44	1	1	52	1.15
12218141--12218225	26	3.2	26	74	12	91	47	2	0	50	1.14
12218320--12218669	67	5.2	66	64	20	193	46	4	3	45	1.39
12218356--12218569	70	3.1	70	66	23	198	45	5	3	45	1.43
12218276--12218678	137	2.9	137	93	0	671	46	4	3	44	1.42
12218424--12218458	18	2.0	17	88	5	52	45	0	0	54	0.99
12218561--12218595	18	2.0	17	88	5	52	45	0	0	54	0.99
12218386--12218602	70	3.1	70	65	21	184	47	4	3	45	1.39
12218611--12218824	50	4.2	51	62	20	122	46	5	3	44	1.41
12218283--12218859	137	4.1	135	84	9	611	46	5	3	44	1.43
12218541--12218864	156	2.1	155	97	0	603	46	5	3	44	1.44
12218717--12218765	15	2.9	18	80	20	61	44	0	0	55	0.99
12218717--12218771	15	3.4	16	80	16	53	43	0	1	54	1.10
12218987--12219054	16	4.2	16	96	0	127	39	35	0	25	1.56
12221451--12221509	25	2.4	25	83	11	77	37	0	10	52	1.35
12221462--12221506	12	3.8	12	88	5	65	40	0	11	48	1.39
12221462--12221507	24	1.9	24	91	8	76	39	0	10	50	1.38
12226912--12227317	221	1.8	222	82	0	526	22	38	19	19	1.93
12228308--12228355	20	2.4	21	75	10	55	64	0	25	10	1.25
12228345--12228377	14	2.4	14	85	5	50	78	0	9	12	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12228774--12228889	60	1.9	61	91	1	189	54	0	5	40	1.23
12229254--12229952	354	2.0	347	86	3	972	30	18	16	34	1.93
12232164--12232208	22	2.0	22	91	0	72	33	31	8	26	1.87
12242333--12242404	27	2.6	27	82	4	72	23	9	26	40	1.85
12257159--12257220	26	2.3	27	94	2	108	37	4	25	32	1.77
12272157--12272229	28	2.6	28	80	2	74	21	21	30	26	1.99
12272578--12272639	23	2.8	22	77	2	70	35	17	17	29	1.93
12272267--12272637	183	2.0	180	89	6	572	26	20	21	31	1.98
12272498--12272711	115	1.8	114	79	11	247	27	20	18	33	1.96
12272795--12272842	18	2.5	20	83	10	64	68	0	2	29	1.01
12277012--12277049	19	2.0	19	89	0	58	18	0	10	71	1.14
12277224--12277287	31	2.0	31	84	3	83	56	9	17	17	1.66
12280841--12280891	26	2.0	26	84	7	68	47	0	0	52	1.00
12282393--12282436	19	2.4	19	85	7	56	52	2	0	45	1.13
12282755--12282838	22	3.9	23	71	21	65	35	0	3	60	1.14
12290057--12290114	19	3.0	20	85	12	77	44	1	0	53	1.10
12290428--12290461	17	2.0	17	88	0	50	58	0	0	41	0.98
12290415--12290458	23	1.9	23	81	9	54	56	0	0	43	0.99
12293787--12293845	28	2.1	28	96	0	109	44	20	22	13	1.86
12300754--12300788	18	2.0	18	88	5	54	14	25	45	14	1.82
12301729--12301773	18	2.6	18	86	10	58	42	6	15	35	1.73
12303710--12303857	76	1.9	76	86	2	208	50	6	10	32	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12305208--12305256	3	16.3	3	100	0	98	32	0	34	32	1.58
12306570--12306610	19	2.1	20	86	4	57	53	9	17	19	1.70
12306588--12306644	11	5.3	11	82	2	62	59	5	19	15	1.55
12308615--12308699	43	2.0	43	80	0	98	30	16	27	25	1.97
12308879--12309038	69	2.3	69	86	0	230	28	18	15	38	1.90
12346776--12346814	19	2.1	19	90	4	62	61	17	0	20	1.34
12348303--12348388	43	2.0	43	83	0	109	26	25	17	30	1.97
12349785--12349954	91	1.9	90	85	6	236	35	18	9	36	1.83
12350065--12350108	18	2.5	17	82	10	52	61	0	0	38	0.96
12350072--12350183	29	3.8	29	70	10	84	60	1	4	33	1.27
12350292--12350528	85	2.8	84	81	9	230	34	11	17	36	1.86
12351208--12351239	5	6.4	5	100	0	64	18	18	0	62	1.33
12355463--12355648	41	4.5	41	93	0	291	29	19	26	24	1.98
12357828--12358148	46	7.5	46	80	15	359	28	21	14	34	1.93
12357963--12358109	36	3.8	36	78	17	170	29	21	12	37	1.89
12357917--12358148	82	2.8	82	93	1	387	29	21	12	36	1.91
12364565--12364962	205	2.0	200	86	5	559	38	4	14	43	1.64
12365327--12365512	41	4.5	41	92	0	300	28	19	28	23	1.98
12374808--12374880	26	2.8	25	83	6	83	26	19	12	42	1.86
12376931--12376972	15	2.9	15	86	10	52	23	38	0	38	1.55
12379361--12379556	73	2.6	73	88	3	293	42	6	10	40	1.63
12381353--12381683	163	2.0	163	98	0	637	34	16	12	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12386092--12386148	29	1.9	30	85	3	80	38	7	15	38	1.75
12391822--12391865	24	1.9	24	90	9	74	36	0	2	61	1.09
12391962--12392001	18	2.4	17	87	8	55	50	7	5	37	1.53
12391932--12392069	68	2.1	66	95	2	249	43	8	6	41	1.61
12392062--12392103	16	2.6	16	92	0	66	42	4	2	50	1.36
12392077--12392137	22	2.7	22	87	2	77	47	1	1	49	1.21
12411516--12411591	29	2.5	30	82	4	82	50	13	17	19	1.78
12413478--12413518	21	2.0	21	90	0	64	63	7	2	26	1.33
12413587--12413636	16	3.2	16	78	16	61	74	2	0	24	0.93
12415050--12415377	44	7.5	44	72	14	218	27	21	20	30	1.98
12427936--12427985	23	2.2	23	86	10	68	64	4	2	30	1.23
12428146--12428192	23	2.0	24	91	4	78	74	2	0	23	0.93
12430725--12430754	9	3.2	9	95	4	51	43	3	10	43	1.54
12435030--12435201	15	11.6	15	67	18	60	43	1	4	50	1.33
12434923--12435436	120	4.3	120	96	1	928	42	2	5	49	1.38
12435270--12435321	15	3.6	15	80	12	56	44	0	1	53	1.11
12435398--12435439	15	2.7	16	82	14	52	45	0	2	52	1.13
12435392--12435430	15	2.7	15	88	7	55	46	0	0	53	1.00
12435374--12435681	156	2.0	156	96	0	571	47	4	2	44	1.39
12435542--12435577	16	2.2	17	90	9	58	44	0	0	55	0.99
12435811--12435878	16	4.2	16	90	0	109	36	33	2	26	1.72
12438737--12438761	12	2.1	12	100	0	50	60	8	0	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12439370--12439581	102	2.1	101	86	1	291	27	24	13	34	1.93
12446580--12446620	18	2.3	18	86	0	55	68	2	0	29	1.03
12459245--12459350	19	5.6	19	78	8	92	68	0	4	26	1.09
12459235--12459361	28	4.6	26	77	11	87	68	0	3	26	1.12
12459561--12459614	10	5.6	10	78	8	67	35	1	0	62	1.06
12459561--12459615	19	2.8	20	89	5	78	34	1	0	63	1.05
12459641--12459811	89	1.9	88	84	8	231	31	8	18	41	1.81
12460497--12460527	11	2.8	11	90	0	53	32	0	0	67	0.91
12460649--12460711	30	2.1	30	93	0	108	57	14	4	23	1.56
12460741--12460783	22	2.0	22	85	0	59	60	6	9	23	1.51
12460749--12460787	11	3.5	11	82	0	51	61	5	10	23	1.48
12466640--12466717	20	3.9	19	70	8	66	57	3	0	38	1.17
12466681--12466750	33	2.2	32	79	5	77	62	8	1	27	1.32
12468349--12468452	34	3.1	34	82	8	122	45	0	12	42	1.42
12468512--12468780	126	2.1	126	88	1	387	37	16	16	29	1.91
12471655--12471694	20	2.0	20	90	0	62	2	17	47	32	1.61
12473736--12473800	30	2.2	30	91	0	103	40	3	29	27	1.71
12474621--12474686	33	2.0	34	96	3	125	43	21	15	19	1.87
12485621--12485665	16	2.8	16	82	0	63	48	22	11	17	1.78
12491558--12491619	31	2.0	31	93	0	106	40	4	14	40	1.67
12491695--12491722	3	9.3	3	100	0	56	64	0	0	35	0.94
12494427--12494640	102	2.1	103	89	2	322	32	18	17	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12494652--12495022	108	3.5	107	86	4	516	32	18	19	30	1.95
12495036--12495292	109	2.3	110	84	6	333	34	16	14	33	1.90
12503987--12504038	21	2.5	21	90	0	77	28	28	13	28	1.94
12506198--12506242	17	2.3	21	75	21	53	48	2	0	48	1.13
12507245--12507283	15	2.5	15	87	4	60	66	0	33	0	0.92
12510738--12510790	15	3.5	15	68	0	52	43	30	3	22	1.71
12513545--12513600	18	3.0	18	66	19	51	50	19	7	23	1.72
12513548--12513610	20	3.2	20	68	17	60	52	20	6	20	1.68
12513525--12513613	38	2.3	38	94	0	160	49	20	7	22	1.74
12514272--12514324	22	2.5	20	77	22	54	37	0	0	62	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218