genome.fa.s23.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  205  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60678849--60678873	13	1.9	13	100	0	50	20	16	0	64	1.30
60681855--60681905	24	2.1	24	85	7	68	43	5	0	50	1.26
60682711--60682776	31	2.1	31	91	5	107	25	12	12	50	1.74
60683943--60684027	39	2.2	39	82	4	100	37	10	10	41	1.74
60688441--60688473	17	1.9	17	88	11	50	39	3	0	57	1.14
60688605--60688659	16	3.4	16	79	0	74	38	10	1	49	1.49
60688605--60688667	32	2.0	32	96	0	117	33	11	1	53	1.46
60690890--60691069	84	2.1	84	82	6	222	48	11	7	31	1.68
60691087--60691130	23	1.9	23	90	0	70	63	2	0	34	1.07
60691451--60691507	30	1.9	30	92	0	96	35	15	3	45	1.64
60691876--60692113	97	2.5	98	79	9	251	36	19	6	36	1.77
60692191--60692340	50	3.1	50	73	14	159	32	19	6	42	1.77
60692173--60692327	47	3.2	47	73	12	152	32	19	7	40	1.80
60693036--60693063	3	9.3	3	100	0	56	0	32	0	67	0.91
60693664--60693703	15	2.5	17	84	12	57	30	7	0	62	1.23
60696021--60696071	23	2.2	22	85	3	57	50	1	0	47	1.12
60699401--60699486	30	2.8	31	80	1	111	37	6	17	38	1.77
60700601--60700646	23	2.0	23	100	0	92	26	17	4	52	1.63
60700682--60700742	31	2.0	31	86	0	86	32	13	11	42	1.79
60701290--60701392	33	3.3	33	76	18	137	37	16	15	30	1.90
60701278--60701392	61	1.9	61	96	0	212	39	17	14	28	1.89
60701278--60701370	28	3.1	28	76	19	107	39	16	16	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60701552--60701599	22	2.2	22	96	0	87	45	16	8	29	1.76
60702127--60702171	13	3.5	13	81	0	63	37	24	0	37	1.56
60702127--60702189	26	2.4	26	94	0	108	39	23	1	34	1.65
60713626--60713699	37	2.0	37	100	0	148	29	13	8	48	1.71
60729323--60729361	21	1.9	20	84	5	51	71	5	10	12	1.28
60741557--60741624	32	2.1	32	86	0	91	32	10	11	45	1.74
60745456--60745838	134	2.8	134	88	3	540	36	12	19	32	1.88
60747807--60747872	32	2.1	31	83	8	80	42	0	9	48	1.35
60750484--60750539	27	2.1	26	83	3	67	35	5	3	55	1.40
60759752--60759822	27	2.5	29	84	9	101	30	1	0	67	0.99
60759774--60759832	27	2.2	27	81	3	66	27	1	5	66	1.22
60760591--60760645	18	3.0	18	75	12	58	65	3	0	30	1.10
60766176--60766258	31	2.7	30	71	15	73	46	7	7	38	1.59
60773544--60773597	25	2.3	25	75	18	62	53	7	3	35	1.47
60774318--60774386	31	2.3	29	80	11	79	59	0	4	36	1.17
60777823--60777866	22	2.0	22	90	0	70	31	18	15	34	1.92
60788308--60788348	19	2.2	19	95	0	73	31	0	17	51	1.46
60788559--60788610	19	2.8	19	94	5	90	38	0	11	50	1.39
60788773--60788829	27	2.1	27	90	0	87	49	14	1	35	1.53
60788862--60788934	27	3.0	24	81	16	96	34	0	12	53	1.38
60788897--60788995	8	11.4	8	69	16	63	37	1	13	48	1.49
60788888--60789016	27	4.7	27	73	18	124	34	0	13	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60788905--60788969	19	3.6	19	77	12	82	38	0	10	50	1.37
60788897--60788969	35	2.1	35	100	0	146	38	0	10	50	1.38
60800504--60800556	27	2.0	27	96	0	97	39	5	15	39	1.70
60815599--60816214	43	14.4	42	71	13	411	26	16	26	29	1.97
60815599--60816190	131	4.6	131	92	4	926	27	16	27	29	1.97
60828503--60829119	132	4.7	132	93	0	993	26	16	26	29	1.97
60828508--60829144	44	14.5	45	75	6	554	26	16	26	29	1.97
60834261--60834303	20	2.0	20	82	8	50	39	6	11	41	1.68
60834672--60834710	12	3.2	12	85	0	51	56	2	2	38	1.27
60836402--60836431	13	2.3	13	94	0	51	33	3	13	50	1.58
60836526--60836718	50	3.8	50	87	0	269	26	23	30	20	1.98
60841803--60841867	32	2.1	32	91	2	105	30	12	10	46	1.76
60843749--60843794	17	2.6	17	86	3	56	19	4	2	73	1.10
60852828--60852866	12	3.2	12	85	0	51	56	2	2	38	1.27
60862461--60862492	7	4.6	7	96	0	55	18	31	9	40	1.83
60862410--60862761	58	6.2	58	82	12	428	27	24	15	32	1.95
60862365--60862645	51	5.4	51	85	7	359	28	24	13	32	1.94
60862461--60862497	14	2.6	14	86	0	56	21	29	10	37	1.88
60862621--60862664	7	6.3	7	89	0	52	22	31	6	38	1.81
60862685--60862716	7	4.6	7	96	0	55	18	31	9	40	1.83
60865935--60865972	19	2.1	19	90	5	60	52	15	0	31	1.43
60869745--60869778	17	2.0	17	100	0	68	35	17	29	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60870050--60870193	64	2.3	64	90	1	218	41	13	19	25	1.87
60871852--60871876	2	12.5	2	100	0	50	48	0	0	52	1.00
60878570--60878603	17	1.9	17	88	5	50	47	5	14	32	1.69
60890758--60890851	31	3.1	31	75	14	97	48	4	2	44	1.34
60890757--60890851	30	3.2	30	77	8	95	48	4	2	45	1.33
60897423--60897498	29	2.6	29	89	0	107	36	7	3	51	1.50
60897897--60897921	13	1.9	13	100	0	50	28	0	24	48	1.52
60910989--60911040	22	2.3	23	86	6	70	28	25	0	46	1.53
60918400--60918448	20	2.4	20	79	3	53	18	10	12	59	1.60
60929466--60929491	8	3.2	8	100	0	52	0	53	0	46	1.00
60929631--60929671	4	9.8	4	89	5	55	19	0	2	78	0.87
60929709--60929746	15	2.6	15	91	4	60	15	5	5	73	1.19
60931335--60931380	16	2.7	18	76	10	51	17	2	10	69	1.27
60931323--60931383	12	5.3	12	72	18	58	16	1	8	73	1.14
60935370--60935449	42	1.9	42	82	10	101	20	33	26	20	1.96
60936175--60936321	33	4.4	33	72	7	100	28	22	14	34	1.94
60936095--60936353	101	2.6	101	83	3	301	27	23	16	32	1.96
60937667--60937719	23	2.5	20	75	24	54	64	1	11	22	1.36
60937867--60937894	3	9.3	3	100	0	56	67	0	0	32	0.91
60941067--60941154	43	2.0	43	95	0	158	44	14	21	19	1.86
60941567--60941595	14	2.0	15	93	6	51	68	0	0	31	0.89
60942087--60942116	15	2.0	15	100	0	60	46	0	6	46	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60953788--60954002	39	5.5	39	95	0	376	27	29	26	16	1.97
60961165--60961228	30	2.2	29	83	13	78	48	6	1	43	1.37
60963411--60963461	21	2.4	22	93	3	86	11	11	29	47	1.76
60963423--60963468	21	2.2	21	88	0	65	10	15	26	47	1.78
60963556--60963684	43	3.0	43	90	1	195	29	24	18	27	1.98
60963557--60963714	43	3.7	43	87	5	117	29	24	18	26	1.98
60963557--60963746	86	2.2	85	81	8	208	32	25	16	25	1.96
60964098--60964182	43	2.0	43	83	0	107	44	9	12	32	1.75
60967597--60967660	15	4.1	15	72	11	58	64	9	3	23	1.38
60969067--60969338	49	5.6	49	68	6	151	22	20	24	32	1.98
60968966--60969400	96	4.4	98	81	4	396	23	21	23	31	1.98
60969211--60969387	49	3.7	49	71	6	162	19	22	26	31	1.98
60982057--60982117	12	4.9	12	73	15	52	63	9	3	22	1.39
60982832--60982869	13	2.9	13	88	7	51	76	5	13	5	1.13
60987864--60987983	20	6.0	20	74	3	98	14	31	18	35	1.90
60993754--60993791	3	12.7	3	100	0	76	65	0	0	34	0.93
60998232--60998265	16	2.3	14	90	10	50	67	0	29	2	1.05
61003312--61003642	181	1.8	181	92	0	554	22	20	18	38	1.94
61007222--61007404	71	2.6	71	82	0	204	29	18	20	31	1.96
61017484--61017597	52	2.2	52	96	0	210	33	13	23	29	1.93
61017585--61017741	37	4.2	37	95	0	287	38	15	19	26	1.91
61027148--61027184	4	9.2	4	93	0	65	0	24	0	75	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61036176--61036267	40	2.2	43	84	7	127	36	7	0	55	1.29
61036176--61036267	42	2.2	42	82	7	116	36	7	0	55	1.29
61036400--61036438	16	2.4	17	87	12	55	20	0	5	74	1.01
61039313--61039387	26	2.8	27	86	8	109	16	25	38	20	1.92
61039464--61039546	39	2.2	38	93	2	139	39	2	2	55	1.26
61039580--61039701	60	2.0	60	84	3	156	53	14	0	31	1.47
61039676--61040027	22	15.8	21	78	13	169	54	13	1	30	1.49
61039716--61039806	8	10.4	8	71	17	65	48	16	1	34	1.54
61039742--61039847	27	4.1	27	86	11	159	51	13	0	33	1.47
61039796--61040149	41	8.5	42	77	11	315	55	12	1	29	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218