genome.fa.s23.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  151  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45908834--45908970	74	1.9	74	89	1	213	32	16	21	29	1.96
45908413--45909097	300	2.3	300	91	3	1067	31	18	22	26	1.97
45908731--45909191	188	2.5	187	86	3	617	31	17	23	27	1.97
45909031--45909176	74	2.0	74	82	8	181	32	17	23	26	1.97
45909215--45909272	16	3.6	16	92	2	98	32	0	8	58	1.28
45909216--45909289	17	4.1	19	71	22	61	33	0	8	58	1.28
45909215--45909289	32	2.2	33	88	9	107	33	0	8	58	1.27
45912437--45912901	9	53.2	9	75	13	402	46	21	0	31	1.56
45912448--45912903	166	2.7	174	92	6	802	46	21	0	31	1.56
45918372--45918442	21	3.4	21	84	0	88	32	16	45	5	1.71
45918758--45919003	83	2.9	84	86	4	336	32	20	21	26	1.98
45918758--45918961	42	4.9	42	87	5	306	31	22	20	25	1.98
45918767--45919048	42	6.7	42	85	4	151	29	20	21	28	1.98
45918938--45919064	42	3.0	43	84	5	154	26	15	22	34	1.95
45918970--45919146	96	1.8	96	85	2	248	24	19	24	31	1.98
45921660--45921734	4	18.8	4	73	20	59	80	1	1	17	0.86
45921659--45921734	29	2.7	27	77	16	84	80	1	1	17	0.85
45921660--45921734	11	6.6	11	75	18	66	80	1	1	17	0.86
45921873--45921914	10	3.9	11	82	14	52	73	4	0	21	1.01
45921871--45921921	22	2.5	20	76	14	59	74	3	0	21	0.98
45924999--45925025	14	1.9	14	100	0	54	74	7	3	14	1.18
45924995--45925064	6	11.7	6	70	11	54	75	5	1	17	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45925013--45925061	17	2.9	16	85	11	62	77	6	0	16	0.96
45929341--45929404	33	1.9	34	87	9	96	29	4	7	57	1.47
45929888--45929918	2	15.5	2	93	0	53	45	0	0	54	0.99
45935216--45935243	3	9.3	3	100	0	56	64	0	35	0	0.94
45939093--45939163	25	2.8	25	87	4	90	25	19	18	36	1.94
45939092--45939180	25	3.6	25	82	0	88	25	17	19	37	1.94
45945382--45945437	30	1.9	28	85	7	76	42	0	0	57	0.99
45945421--45945489	17	3.9	16	74	22	59	27	2	1	68	1.13
45946671--45946720	25	2.0	25	84	7	66	6	32	4	58	1.41
45946677--45946711	17	1.9	19	88	11	56	5	31	2	60	1.35
45950832--45950884	21	2.5	21	87	0	79	30	30	9	30	1.89
45958065--45958103	19	2.1	19	85	9	53	38	7	5	48	1.54
45970965--45971130	40	4.2	39	92	3	244	26	28	19	25	1.98
45970965--45971169	78	2.6	80	83	7	249	26	28	19	24	1.99
45970965--45971169	40	5.2	39	86	8	229	26	28	19	24	1.99
45976025--45976287	40	6.6	40	87	3	316	26	28	20	24	1.99
45981517--45981582	13	5.1	13	74	7	62	34	13	9	42	1.76
45986263--45986338	9	8.4	9	84	5	100	40	22	11	25	1.88
45991921--45991948	2	14.0	2	100	0	56	50	0	50	0	1.00
46002898--46002938	21	2.0	21	85	0	55	19	26	34	19	1.96
46003029--46003103	21	3.6	21	87	3	116	26	36	18	18	1.94
46003642--46003684	22	1.9	23	90	4	70	76	6	16	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46004384--46004453	24	2.8	25	74	26	76	42	0	7	50	1.30
46014840--46014916	25	3.2	24	72	18	70	44	1	1	53	1.17
46014846--46014942	48	2.0	51	84	10	130	40	2	3	54	1.28
46020467--46020506	21	1.9	21	85	10	55	27	10	17	45	1.80
46021451--46021506	29	1.9	29	92	0	94	50	10	30	8	1.68
46026048--46026078	14	2.2	14	94	0	53	32	9	19	38	1.84
46028391--46028439	25	2.0	25	95	0	89	34	8	34	22	1.84
46035245--46035283	18	2.2	17	86	13	53	33	0	20	46	1.51
46035509--46035584	23	3.3	23	88	0	116	21	19	27	31	1.97
46040369--46040422	27	2.0	27	96	0	99	31	22	27	18	1.97
46044410--46044478	25	3.0	22	75	17	61	50	0	2	46	1.16
46048409--46048447	21	1.9	20	89	5	60	17	12	2	66	1.35
46048550--46048607	30	1.9	29	83	13	73	37	17	17	27	1.92
46054139--46054173	2	17.5	2	88	11	54	45	2	0	51	1.16
46061958--46062014	24	2.4	24	78	0	69	12	15	26	45	1.82
46061995--46062057	20	3.0	20	83	4	63	14	14	22	49	1.79
46072779--46072808	14	2.1	14	93	0	51	46	0	0	53	1.00
46079634--46079731	29	3.5	29	74	9	105	45	1	0	53	1.07
46079643--46079693	24	2.1	24	82	7	59	43	1	0	54	1.11
46078985--46079633	91	7.1	91	94	1	1108	45	4	3	46	1.40
46079583--46079729	49	2.8	54	82	9	171	47	2	0	50	1.12
46079657--46079962	121	2.5	120	89	3	456	44	2	4	48	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46087002--46087044	21	2.0	22	82	13	54	16	20	25	37	1.93
46094440--46094586	41	3.6	41	87	0	204	23	22	23	31	1.99
46094434--46094586	82	1.9	82	88	0	234	22	22	22	31	1.99
46096717--46096755	19	2.0	20	90	5	62	74	7	0	17	1.05
46097893--46098002	45	2.4	45	84	0	130	21	18	18	41	1.90
46100025--46100063	18	2.2	17	86	13	53	33	0	20	46	1.51
46100289--46100364	23	3.3	23	90	0	125	21	21	27	30	1.98
46106230--46106256	6	4.5	6	100	0	54	29	14	0	55	1.40
46107289--46107326	18	2.1	18	85	9	51	44	0	0	55	0.99
46109791--46109836	21	2.2	21	92	0	74	39	21	21	17	1.93
46116370--46116446	11	6.9	11	70	24	54	41	1	2	54	1.22
46116586--46116610	9	2.8	9	100	0	50	32	36	0	32	1.58
46120574--46120636	30	2.2	28	86	11	83	53	4	12	28	1.58
46121898--46121932	6	6.2	6	96	3	56	88	0	11	0	0.51
46124650--46124694	11	3.9	12	77	16	51	24	31	2	42	1.67
46124650--46124702	22	2.4	21	81	15	54	26	28	3	41	1.73
46124746--46124777	16	2.1	16	94	5	57	37	0	0	62	0.95
46127124--46128288	22	54.0	22	83	5	1368	43	29	0	26	1.59
46127124--46127184	27	2.2	29	85	8	90	44	34	0	21	1.53
46127174--46128288	43	26.0	44	84	5	1331	43	29	0	26	1.59
46128382--46128549	37	4.4	38	65	14	114	42	8	7	42	1.62
46128288--46128566	114	2.4	114	95	0	513	41	8	7	42	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46131491--46131897	127	3.2	127	86	2	556	30	22	16	31	1.95
46131971--46132052	26	3.2	26	63	13	69	45	8	4	41	1.56
46131965--46132074	52	2.1	52	96	0	211	43	15	5	35	1.70
46131991--46132072	26	3.2	26	63	13	69	43	15	6	34	1.72
46134484--46134509	10	2.6	10	100	0	52	19	19	15	46	1.85
46137427--46137555	42	3.1	42	74	13	131	43	16	23	17	1.87
46137527--46137574	20	2.4	21	86	6	64	47	16	18	16	1.82
46144989--46145037	22	2.2	22	85	7	64	26	14	28	30	1.95
46149757--46149942	93	2.0	93	97	0	354	19	28	14	37	1.91
46151022--46151067	18	2.8	18	84	15	64	0	30	41	28	1.56
46151444--46151469	13	2.0	13	100	0	52	38	7	15	38	1.76
46152122--46152369	136	1.9	131	85	5	345	14	13	14	57	1.66
46153866--46153996	65	2.0	65	96	0	244	31	14	19	35	1.91
46156962--46156999	2	19.0	2	100	0	76	50	50	0	0	1.00
46157813--46157841	5	5.8	5	100	0	58	41	0	0	58	0.98
46158077--46158141	30	2.2	30	100	0	130	24	26	6	43	1.77
46167154--46167184	15	2.1	14	94	5	53	19	19	12	48	1.81
46168215--46168265	22	2.3	21	87	9	75	37	3	31	27	1.75
46168226--46168272	22	2.1	22	100	0	94	31	4	29	34	1.77
46171362--46171403	20	2.1	20	86	0	57	47	0	7	45	1.30
46173182--46173212	9	3.4	9	90	0	53	38	22	12	25	1.90
46177596--46177638	20	2.2	20	86	0	59	48	0	6	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46180277--46180528	110	2.4	105	82	12	348	27	1	13	57	1.45
46180252--46180510	113	2.3	112	84	8	330	26	0	13	59	1.40
46185930--46186022	24	4.0	24	73	9	68	55	9	6	27	1.56
46186995--46187033	17	2.2	17	86	4	51	74	2	20	2	1.06
46187971--46188079	42	2.5	44	85	2	150	32	21	18	28	1.96
46188214--46188741	88	6.0	88	93	0	887	23	24	25	26	2.00
46196591--46196761	54	3.2	52	86	6	245	5	30	2	61	1.30
46196761--46196794	5	7.0	5	93	6	61	0	58	0	41	0.98
46198148--46198300	43	3.5	43	71	8	114	30	15	20	34	1.93
46199751--46200042	23	12.6	23	77	4	264	29	12	17	40	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218