genome.fa.s23.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  117  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34537170--34537288	41	2.9	42	79	10	129	30	15	21	31	1.95
34537877--34537916	19	2.1	19	100	0	80	52	5	10	32	1.56
34545007--34545079	32	2.3	32	90	0	110	31	26	13	28	1.94
34544971--34545149	93	1.9	93	82	2	225	26	25	16	31	1.96
34546059--34546102	22	2.0	22	90	0	70	31	31	9	27	1.88
34557535--34557576	22	1.9	22	90	9	68	45	0	11	42	1.41
34560235--34560263	10	2.7	11	94	5	51	41	0	0	58	0.98
34564441--34564523	36	2.3	37	79	6	98	27	9	27	34	1.88
34567772--34567800	14	2.1	14	100	0	58	37	0	0	62	0.96
34572626--34572662	9	4.1	9	92	0	65	45	13	10	29	1.77
34572870--34572929	30	2.0	31	90	3	95	20	38	0	41	1.52
34576743--34576847	54	1.9	54	86	0	147	25	20	28	25	1.99
34576747--34576867	54	2.2	54	80	2	136	27	19	26	26	1.99
34576963--34577002	21	2.0	21	85	5	55	25	15	5	55	1.60
34576960--34577007	20	2.5	18	78	15	51	27	12	4	56	1.54
34578315--34578341	3	9.0	3	100	0	54	33	33	0	33	1.58
34585039--34585075	18	2.1	18	94	0	65	29	40	8	21	1.82
34585195--34585244	26	1.9	26	83	0	64	18	6	28	48	1.71
34587833--34588328	47	10.2	47	89	7	722	32	9	29	28	1.89
34587860--34587980	63	2.0	61	93	3	206	30	14	27	28	1.95
34587909--34587937	14	2.1	14	100	0	58	20	27	31	20	1.98
34588312--34588343	15	2.1	15	100	0	64	31	6	37	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34588265--34588410	62	2.3	62	91	2	238	30	10	33	25	1.89
34588528--34588606	37	2.1	37	88	4	115	24	17	31	26	1.97
34592090--34592127	13	2.9	13	100	0	76	39	47	0	13	1.42
34592108--34592185	38	2.0	39	95	2	140	51	28	2	17	1.59
34592383--34592418	18	1.9	19	88	5	56	27	11	19	41	1.85
34593313--34593339	10	2.7	10	100	0	54	7	18	40	33	1.78
34600480--34600556	3	25.7	3	76	5	75	63	0	7	28	1.22
34602939--34602966	13	2.2	13	100	0	56	71	0	0	28	0.86
34610005--34610080	3	25.7	3	73	7	66	64	0	7	27	1.21
34611195--34611232	13	2.9	13	100	0	76	39	47	0	13	1.42
34611213--34611290	38	2.0	39	95	2	140	51	28	2	17	1.59
34611487--34611522	18	1.9	19	88	5	56	27	11	19	41	1.85
34612415--34612441	10	2.7	10	100	0	54	7	18	40	33	1.78
34619584--34619660	3	25.7	3	76	5	75	63	0	7	28	1.22
34622052--34622084	3	11.0	3	100	0	66	66	0	0	33	0.92
34635950--34636028	38	2.1	38	83	4	97	32	16	25	25	1.96
34638252--34638423	42	4.1	42	84	0	220	30	20	19	29	1.97
34638271--34638444	84	2.1	84	82	5	210	30	21	19	28	1.98
34639360--34639727	4	92.0	4	94	0	601	46	24	3	25	1.68
34641748--34641928	50	3.7	50	87	1	231	26	22	29	20	1.99
34646755--34647067	41	7.6	41	84	0	383	21	28	16	32	1.96
34646915--34646981	21	3.2	21	65	12	57	17	32	20	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34662272--34662299	13	2.2	13	100	0	56	25	21	14	39	1.91
34664136--34664160	5	5.0	5	100	0	50	20	0	0	80	0.72
34668588--34668743	33	4.6	34	68	24	96	37	28	16	16	1.91
34668482--34668850	103	3.6	103	91	0	587	34	29	17	18	1.94
34675595--34675644	26	1.9	26	92	8	84	80	0	16	4	0.87
34675596--34675651	18	3.0	18	86	5	76	80	0	17	1	0.80
34675596--34675651	14	4.1	14	80	11	64	80	0	17	1	0.80
34681136--34681249	43	2.7	43	80	13	135	24	20	26	28	1.99
34682225--34682621	23	17.1	23	87	1	542	27	12	20	40	1.88
34682225--34682621	116	3.4	116	88	1	564	27	12	20	40	1.88
34694491--34694581	45	2.0	45	93	0	155	20	32	13	32	1.91
34698523--34698574	23	2.3	22	75	21	54	9	23	1	65	1.32
34699896--34699930	9	3.8	9	88	3	52	11	8	8	71	1.31
34705956--34706042	44	2.0	44	100	0	174	36	9	20	33	1.85
34709072--34709123	27	1.9	26	88	7	77	46	11	11	30	1.76
34709078--34709180	39	2.6	38	77	7	109	47	11	10	30	1.74
34709081--34709245	38	4.3	39	77	13	126	45	10	10	33	1.72
34712357--34712398	12	3.5	12	75	12	50	9	11	0	78	0.96
34712352--34712410	20	2.8	20	79	20	66	6	15	1	76	1.07
34712353--34712396	24	1.9	24	90	9	74	9	13	0	77	0.99
34724245--34724327	39	2.1	38	82	4	94	43	8	12	36	1.72
34724333--34724407	36	2.1	37	82	7	91	46	5	12	36	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34762997--34763030	16	2.1	17	88	5	52	35	20	5	38	1.77
34764807--34764843	14	2.6	14	95	0	65	21	0	13	64	1.27
34791290--34791322	15	2.1	17	88	11	52	36	18	6	39	1.75
34793099--34793135	14	2.6	14	95	0	65	21	0	13	64	1.27
34803844--34804549	27	26.3	27	79	6	643	44	18	19	17	1.88
34804871--34804990	28	4.3	28	80	0	132	20	25	22	32	1.98
34804871--34804990	56	2.1	56	83	3	152	20	25	22	32	1.98
34818623--34818706	42	2.0	42	85	0	114	45	14	13	27	1.81
34823027--34823076	25	2.0	25	100	0	100	40	20	8	32	1.81
34835591--34835636	16	2.9	16	81	12	67	26	23	4	45	1.71
34837128--34837185	25	2.3	25	81	0	71	32	24	17	25	1.96
34845695--34845793	49	2.0	49	86	0	135	25	26	19	29	1.98
34845756--34845841	25	3.4	25	77	6	84	26	20	23	29	1.99
34864685--34864715	3	10.3	3	100	0	62	67	0	32	0	0.91
34867941--34867974	16	2.2	15	89	5	50	44	0	0	55	0.99
34868752--34868789	8	4.6	8	87	6	58	34	2	0	63	1.09
34881148--34881252	40	2.6	41	81	11	112	25	27	12	34	1.92
34881162--34881229	19	3.4	19	68	9	55	22	32	10	35	1.88
34892336--34892386	21	2.4	21	96	0	93	39	35	15	9	1.81
34893400--34894266	449	1.9	450	95	3	1557	35	9	4	49	1.57
34894524--34894561	13	2.8	14	80	19	53	21	5	7	65	1.38
34900942--34900981	11	3.3	12	86	10	55	77	0	22	0	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34900950--34900987	13	3.1	13	92	7	62	78	0	21	0	0.74
34900942--34900987	6	7.5	6	83	11	58	76	0	23	0	0.79
34902234--34902413	92	2.0	89	81	6	211	27	18	25	28	1.98
34902441--34902958	260	2.0	260	90	0	813	28	19	25	26	1.99
34902984--34903308	44	7.5	44	74	10	274	29	21	21	27	1.99
34902985--34903353	44	8.5	44	73	10	235	28	21	22	28	1.99
34903033--34903231	84	2.3	87	81	12	216	27	21	25	26	1.99
34904788--34904869	21	3.9	21	69	21	55	31	1	6	60	1.28
34905515--34905552	13	2.8	14	80	19	53	21	5	7	65	1.38
34905559--34905592	15	2.3	15	94	0	59	17	0	17	64	1.29
34906636--34906883	50	4.8	50	84	3	271	27	20	28	22	1.99
34911136--34911169	10	3.3	10	84	8	50	41	0	11	47	1.40
34910002--34913368	592	5.7	592	81	5	3782	33	14	12	38	1.85
34915903--34915932	15	2.0	15	100	0	60	13	6	46	33	1.69
34920320--34920357	16	2.4	17	86	8	53	36	0	2	60	1.11
34920936--34921003	34	2.0	34	97	0	127	33	13	11	41	1.81
34923348--34923430	37	2.2	37	86	0	112	36	32	16	14	1.89
34927640--34927736	40	2.4	40	89	0	158	28	19	20	30	1.97
34934668--34934759	43	2.1	43	93	0	157	28	11	25	34	1.91
34935656--34935828	40	4.3	40	93	0	301	28	21	21	28	1.98
34936868--34937031	43	3.8	43	83	4	197	20	20	28	30	1.98
34941979--34942404	47	9.1	47	95	0	710	32	9	30	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34942522--34942600	37	2.1	37	88	4	115	25	18	30	25	1.98
34947507--34947922	44	9.5	44	75	5	317	26	21	21	30	1.98
34949060--34949172	45	2.5	46	79	1	129	14	26	17	41	1.88
34956316--34956358	17	2.6	17	92	3	70	25	27	9	37	1.87
34962053--34962125	23	3.2	23	63	18	62	31	5	31	31	1.80
34961991--34962410	47	9.1	47	93	3	701	31	9	30	28	1.88
34961991--34962410	93	4.5	94	95	2	701	31	9	30	28	1.88
34961991--34962410	231	1.8	230	92	2	716	31	9	30	28	1.88
34964393--34964495	43	2.4	43	100	0	206	22	15	35	26	1.94
34964477--34964550	29	2.6	29	89	4	105	25	16	32	25	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218