genome.fa.s23.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  161  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48863814--48863895	3	27.0	3	76	11	60	26	4	3	64	1.30
48863853--48863898	19	2.5	19	89	3	67	26	0	8	65	1.21
48864406--48864697	110	2.7	109	88	2	437	29	17	18	33	1.95
48867999--48868035	17	2.1	18	90	5	58	29	24	0	45	1.53
48868751--48868795	6	7.3	6	80	14	56	80	0	20	0	0.72
48869597--48869633	10	3.5	10	86	13	56	78	0	10	10	0.97
48869725--48869772	22	2.2	22	85	3	62	29	12	35	22	1.91
48870854--48871456	88	6.9	88	92	0	922	26	24	24	25	2.00
48870859--48871437	44	13.2	44	65	14	219	26	24	24	25	2.00
48871447--48871727	132	2.1	132	87	1	411	32	17	24	25	1.97
48873113--48873192	3	26.7	3	76	9	65	26	5	1	67	1.18
48873505--48873569	22	2.9	22	78	13	62	18	4	7	69	1.31
48873677--48873991	111	2.8	111	90	1	499	31	15	17	34	1.92
48875992--48876060	34	2.0	34	94	0	120	37	10	15	36	1.82
48881489--48881515	13	2.1	13	100	0	54	37	0	14	48	1.45
48882685--48882833	42	3.5	42	76	8	115	25	16	26	31	1.97
48884591--48884615	13	1.9	13	100	0	50	40	24	4	32	1.73
48886006--48886185	41	4.4	41	91	0	288	24	25	19	31	1.98
48886176--48886254	41	1.9	41	86	0	113	34	24	15	26	1.94
48887967--48888023	28	2.0	28	93	6	98	36	5	0	57	1.21
48887967--48888020	14	3.8	14	76	11	56	37	5	0	57	1.22
48888215--48888243	14	2.0	15	93	6	51	51	20	0	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48895759--48895933	49	3.6	48	79	8	158	26	20	27	25	1.99
48896445--48896558	49	2.3	50	84	3	151	24	28	21	26	1.99
48898366--48898588	40	5.6	39	83	5	232	24	20	28	26	1.99
48898441--48898623	79	2.3	80	81	1	217	25	20	28	25	1.99
48906323--48906505	39	4.6	39	86	3	188	25	20	28	26	1.99
48906284--48906505	40	5.6	40	83	4	227	24	20	28	26	1.99
48906284--48906503	79	2.8	78	83	3	233	25	20	28	25	1.99
48906359--48906540	79	2.3	79	80	2	206	25	20	28	25	1.99
48914388--48914449	29	2.1	29	82	5	72	61	3	1	33	1.22
48916560--48916684	60	2.1	60	86	0	169	36	17	8	37	1.81
48917466--48917503	18	2.2	18	90	4	60	18	23	0	57	1.40
48923132--48923173	21	2.0	22	85	4	59	59	9	2	28	1.41
48930370--48930405	13	2.8	13	95	0	63	44	0	0	55	0.99
48935410--48935555	43	3.4	43	84	4	179	28	17	23	30	1.97
48937778--48937862	43	2.0	43	100	0	170	25	18	14	41	1.88
48939165--48939241	3	26.0	3	74	7	50	57	0	10	32	1.33
48940053--48940106	28	1.9	28	82	14	67	0	11	14	74	1.08
48940336--48940382	19	2.5	18	83	10	58	14	0	8	76	1.01
48941242--48941300	26	2.3	27	80	14	70	62	3	0	33	1.12
48941257--48941317	26	2.3	26	80	5	70	59	1	0	39	1.08
48966168--48966796	155	4.1	154	82	4	700	34	11	14	38	1.82
48966168--48966796	309	2.0	306	83	3	798	34	11	14	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48967428--48967473	13	3.8	13	76	23	55	58	0	0	41	0.98
48967428--48967480	24	2.3	22	84	15	72	60	0	0	39	0.97
48967428--48967479	8	6.2	9	75	20	51	59	0	0	40	0.97
48967429--48967475	18	2.8	18	78	18	57	59	0	0	40	0.97
48967428--48967484	23	2.5	24	88	11	84	59	0	0	40	0.97
48969242--48969299	29	2.0	29	83	6	73	50	3	0	46	1.18
48969869--48969897	3	9.7	3	100	0	58	31	0	0	68	0.89
48991973--48992019	12	3.9	12	75	10	51	68	17	8	6	1.37
48991964--48992023	24	2.7	21	85	14	93	66	20	8	5	1.37
49003068--49003141	4	18.5	4	100	0	148	25	0	24	50	1.50
49005215--49005323	54	2.0	54	100	0	218	49	5	12	32	1.64
49006261--49006301	21	1.9	22	90	5	66	31	0	2	65	1.05
49006271--49006328	19	3.1	19	76	14	66	31	1	0	67	1.01
49006392--49006423	13	2.5	13	94	0	55	78	6	3	12	1.06
49006507--49006553	19	2.4	19	89	3	67	31	2	0	65	1.04
49008452--49008504	23	2.3	23	83	0	70	13	22	13	50	1.75
49019763--49019833	25	2.8	26	85	8	92	36	12	15	35	1.86
49025492--49025607	42	2.7	43	80	4	128	31	28	16	23	1.96
49027805--49027877	19	3.7	19	70	24	62	45	1	1	52	1.18
49027887--49027923	16	2.3	17	81	13	51	54	0	5	40	1.24
49029088--49029137	21	2.4	21	83	6	66	20	34	20	26	1.96
49032008--49032093	42	2.0	42	90	0	136	30	31	16	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49033165--49033270	53	2.0	53	88	0	158	24	29	29	16	1.97
49039158--49039226	27	2.6	26	77	6	75	20	27	15	36	1.93
49039438--49039564	45	2.8	44	80	3	146	22	20	12	44	1.84
49042167--49042238	19	3.8	19	78	10	67	13	1	25	59	1.43
49042921--49042977	25	2.3	24	80	11	62	15	3	28	52	1.59
49045284--49045333	25	2.0	26	88	4	75	20	2	22	56	1.53
49045284--49045343	25	2.3	25	82	5	66	18	1	26	53	1.54
49045326--49045372	20	2.4	20	78	3	60	14	0	27	57	1.38
49060480--49060537	27	2.1	27	80	0	62	17	17	41	24	1.90
49061640--49061687	23	2.1	23	88	0	69	27	16	20	35	1.94
49062254--49062306	25	2.1	25	96	0	97	26	13	39	20	1.89
49064694--49064741	16	3.1	15	77	17	53	39	22	4	33	1.74
49065510--49065576	26	2.6	26	79	6	75	1	22	4	71	1.12
49068353--49068459	3	35.7	3	98	0	205	0	31	0	67	0.97
49070838--49070885	16	3.1	15	77	17	53	39	22	4	33	1.74
49071759--49071812	25	2.2	25	83	6	65	48	3	1	46	1.30
49076119--49076278	61	2.6	62	76	5	166	36	5	15	42	1.71
49077626--49077682	18	3.2	18	76	23	50	70	3	1	24	1.13
49077688--49077713	11	2.4	11	100	0	52	61	7	0	30	1.24
49087317--49087376	6	10.0	6	98	0	111	31	0	1	66	1.01
49088763--49088828	29	2.2	30	81	5	80	33	6	15	45	1.70
49089632--49089664	16	2.1	16	88	11	50	45	3	6	45	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49089999--49090057	11	5.4	11	80	11	59	25	32	0	42	1.55
49089999--49090081	22	3.6	22	74	11	78	24	33	1	40	1.63
49103913--49104011	28	3.6	28	86	1	128	31	23	14	31	1.94
49106277--49106310	16	2.1	16	88	0	50	35	20	2	41	1.68
49112013--49112061	16	2.7	18	82	14	57	61	0	6	32	1.21
49115682--49115941	96	2.7	95	89	1	385	36	2	18	41	1.65
49115770--49115936	53	3.3	53	65	17	140	40	2	19	37	1.65
49115954--49116242	126	2.3	126	90	0	452	32	17	21	28	1.96
49116907--49117009	34	3.1	34	81	15	137	50	4	3	40	1.42
49117416--49117458	18	2.4	18	88	0	59	44	9	27	18	1.80
49119257--49119329	11	6.6	11	81	6	94	49	0	28	21	1.50
49119257--49119329	23	3.3	21	88	9	110	49	0	28	21	1.50
49122443--49122590	41	3.6	41	95	0	260	30	22	20	25	1.99
49122443--49122616	41	4.2	41	89	2	242	29	23	20	25	1.99
49124249--49124300	28	1.9	26	92	7	86	46	7	0	46	1.31
49125992--49126034	20	2.3	18	84	8	50	2	30	4	62	1.28
49145677--49145702	3	8.7	3	100	0	52	65	0	0	34	0.93
49151020--49151064	22	2.1	22	91	4	74	11	22	28	37	1.88
49151177--49151379	43	4.8	42	72	7	153	29	31	17	21	1.96
49151730--49151842	21	5.4	21	77	0	82	6	40	16	36	1.74
49151818--49151959	66	2.2	66	89	2	214	13	26	19	40	1.88
49151818--49151983	66	2.5	65	87	2	206	13	25	19	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49157289--49157893	9	68.8	9	69	20	197	39	1	14	45	1.53
49157294--49157413	16	7.9	16	69	19	96	35	1	17	45	1.58
49157308--49157462	25	6.2	25	77	11	129	38	1	15	45	1.55
49157334--49157485	34	4.3	35	73	16	118	38	1	16	43	1.56
49157469--49157501	16	2.1	16	100	0	66	30	0	24	45	1.53
49157436--49157647	50	3.9	50	71	17	165	41	0	15	42	1.50
49157365--49157506	25	5.6	25	71	17	89	39	0	16	42	1.54
49157365--49157506	34	4.2	33	73	12	119	39	0	16	42	1.54
49157487--49157826	34	9.9	34	74	16	249	39	1	12	46	1.51
49157400--49157839	31	14.5	31	72	19	301	40	1	13	45	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218