genome.fa.s23.2.7.7.80.10.50.1000.209.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  209  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62097056--62097231	62	2.8	62	86	1	228	23	27	23	26	2.00
62100305--62100379	18	4.5	17	75	24	79	36	4	18	41	1.70
62100325--62100385	31	2.0	31	100	0	122	39	3	14	42	1.62
62100338--62100385	14	3.2	14	74	25	53	39	2	14	43	1.57
62102868--62103099	102	2.3	104	91	2	380	20	21	27	30	1.98
62114498--62114554	25	2.4	23	79	5	60	66	5	5	22	1.32
62114970--62115022	19	2.6	20	79	8	63	45	1	0	52	1.11
62116272--62116363	19	4.8	19	78	0	103	35	13	14	36	1.84
62116488--62116537	17	3.1	17	77	13	52	64	0	34	2	1.05
62116489--62116526	15	2.4	16	95	4	69	63	0	36	0	0.95
62117827--62118021	98	2.0	98	95	0	354	27	10	25	36	1.89
62120653--62121652	510	2.0	510	94	0	1770	46	11	11	30	1.75
62131891--62132041	56	2.7	56	97	0	284	43	7	9	40	1.65
62137846--62137883	18	2.1	19	90	5	60	52	5	21	21	1.66
62157302--62157348	16	2.8	17	74	9	51	36	12	2	48	1.53
62159132--62159157	13	2.0	13	100	0	52	53	7	38	0	1.30
62161348--62161388	21	2.0	21	85	0	55	65	19	7	7	1.41
62163336--62163360	3	8.3	3	100	0	50	36	0	0	64	0.94
62167480--62167512	16	2.0	17	88	5	50	48	0	0	51	1.00
62177692--62177764	37	2.0	37	97	0	137	23	12	20	43	1.85
62178788--62178845	25	2.4	23	80	5	62	67	5	5	22	1.31
62192183--62192259	38	2.0	38	100	0	154	48	7	5	38	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62198526--62198567	21	2.0	21	100	0	84	33	23	0	42	1.55
62205864--62205893	4	7.5	4	100	0	60	50	23	0	26	1.50
62207625--62207717	47	2.0	47	83	8	118	53	5	7	33	1.52
62209393--62209666	44	6.4	43	73	10	213	27	21	23	28	1.99
62209466--62209673	85	2.4	84	78	10	190	25	21	23	29	1.99
62209428--62209686	129	2.0	129	86	1	358	25	22	22	29	1.99
62209911--62210474	50	11.6	49	69	10	226	22	22	23	32	1.98
62209802--62211123	388	3.4	388	88	3	1812	25	21	22	31	1.98
62209677--62211174	100	15.2	100	85	5	1616	25	20	22	31	1.98
62210052--62211174	50	22.9	50	74	8	880	26	20	21	31	1.98
62212563--62212678	7	17.0	7	91	5	193	14	16	0	68	1.20
62212563--62212678	34	3.4	34	96	2	139	14	16	0	68	1.20
62213643--62213670	6	4.7	6	100	0	56	14	14	0	71	1.15
62213590--62213670	26	3.0	26	77	10	83	11	11	4	72	1.25
62218330--62218422	47	2.0	47	83	8	118	53	5	7	33	1.52
62221197--62221312	51	2.3	51	80	5	137	36	18	5	39	1.74
62222032--62222074	16	2.8	16	82	10	54	67	0	2	30	1.03
62228463--62228511	23	2.1	23	100	0	98	34	14	12	38	1.83
62232957--62233005	23	2.1	23	100	0	98	34	14	12	38	1.83
62236683--62236729	4	11.8	4	90	0	76	46	27	2	23	1.63
62238185--62238321	51	2.7	51	78	8	145	38	18	4	37	1.71
62239049--62239087	20	2.0	20	89	0	60	30	0	5	64	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62243408--62243457	17	2.7	20	78	18	70	10	0	44	46	1.37
62248046--62248095	17	2.7	20	78	18	70	10	0	44	46	1.37
62251717--62251777	30	2.0	30	100	0	122	34	9	29	26	1.88
62253408--62253446	19	2.1	19	95	0	69	35	0	0	64	0.94
62253411--62253453	19	2.3	19	87	0	59	34	0	0	65	0.93
62255761--62255999	117	2.0	117	90	0	379	33	17	25	23	1.96
62257818--62257877	30	2.0	30	96	0	111	41	21	6	30	1.79
62257882--62257922	21	2.0	21	100	0	82	63	4	7	24	1.40
62258433--62258555	9	13.1	9	71	23	85	32	2	1	63	1.17
62258434--62258544	38	3.0	38	79	11	124	29	2	1	65	1.16
62258540--62258587	21	2.3	20	82	3	60	35	4	0	60	1.16
62258746--62258791	23	1.9	25	83	16	62	58	0	0	41	0.98
62261210--62261295	42	2.0	43	86	6	122	46	13	13	25	1.81
62261336--62261374	10	3.5	11	86	10	53	28	0	0	71	0.86
62261330--62261370	18	2.3	19	79	12	50	29	0	0	70	0.87
62264428--62264474	20	2.2	22	81	11	53	27	0	10	61	1.29
62264435--62264476	20	2.0	22	90	9	70	23	0	11	64	1.27
62267739--62267772	16	2.0	18	88	11	54	35	0	2	61	1.11
62272135--62272199	28	2.3	29	75	19	66	55	7	3	33	1.44
62272243--62272270	3	9.3	3	100	0	56	67	0	0	32	0.91
62279936--62280031	43	2.2	45	86	3	133	56	4	4	35	1.38
62284907--62284944	20	2.0	20	89	5	60	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62284898--62284960	28	2.3	28	81	10	85	47	0	0	52	1.00
62299417--62299441	13	1.9	13	100	0	50	8	32	4	56	1.47
62303138--62303172	17	2.1	17	100	0	70	37	5	17	40	1.73
62302968--62304132	572	2.0	578	96	2	2171	33	15	18	32	1.92
62303827--62304199	182	2.0	182	98	0	728	34	15	19	31	1.92
62306280--62306322	4	10.8	4	94	0	59	44	23	6	25	1.78
62310575--62310611	4	9.2	4	100	0	74	48	24	0	27	1.51
62323214--62323307	3	31.3	3	86	4	109	31	4	3	60	1.32
62328810--62328859	16	3.1	17	82	8	59	16	22	2	60	1.46
62333247--62333368	50	2.5	50	82	2	158	27	23	28	19	1.98
62345592--62345625	17	1.9	18	88	5	52	20	2	14	61	1.46
62345855--62345937	30	2.8	29	85	10	96	37	3	9	49	1.53
62345855--62345937	31	2.8	29	83	10	87	37	3	9	49	1.53
62347405--62347466	26	2.4	26	84	7	65	37	38	1	22	1.64
62358028--62358085	26	2.2	26	81	3	71	63	13	12	10	1.51
62382724--62382836	47	2.4	45	77	11	111	27	24	3	44	1.70
62385285--62385326	21	2.0	21	86	4	59	28	2	7	61	1.35
62386548--62386594	25	2.0	25	84	16	64	25	2	12	59	1.45
62394452--62394505	28	2.0	26	82	7	63	18	12	11	57	1.64
62394704--62394745	13	3.2	13	80	16	50	21	0	2	76	0.90
62394703--62394745	18	2.4	18	81	11	54	23	0	2	74	0.93
62395250--62395288	15	2.6	15	84	8	53	66	2	2	28	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62400751--62400784	9	3.7	9	96	4	59	23	8	20	47	1.78
62401275--62401449	41	4.3	40	75	7	154	30	28	18	22	1.97
62401709--62401825	40	2.9	39	81	3	135	20	17	21	40	1.92
62405039--62405072	8	4.2	8	100	0	68	35	11	11	41	1.78
62407534--62407566	12	2.8	12	90	0	57	66	0	3	30	1.06
62409033--62409383	187	1.9	187	86	3	510	28	23	17	30	1.97
62409182--62409464	143	2.0	143	83	2	363	29	22	17	30	1.97
62409220--62409552	143	2.3	143	88	2	481	28	22	18	30	1.98
62410423--62410457	5	6.6	5	96	3	52	5	17	0	77	0.96
62410543--62410575	14	2.3	15	89	5	50	24	33	15	27	1.95
62411457--62411516	30	2.0	30	96	0	111	56	1	6	35	1.35
62415564--62415606	12	3.6	12	80	0	50	65	18	0	16	1.28
62415569--62415609	15	2.7	15	84	0	55	65	19	0	14	1.26
62417963--62417993	11	2.8	11	95	0	53	41	9	25	22	1.84
62420599--62420631	17	1.9	17	100	0	66	42	9	0	48	1.35
62429780--62429804	13	1.9	13	100	0	50	64	0	0	36	0.94
62429765--62429809	16	2.9	15	87	9	63	66	0	0	33	0.92
62429765--62429798	8	4.4	8	96	3	61	64	0	0	35	0.94
62432372--62432424	23	2.3	23	90	0	88	22	20	24	32	1.98
62435281--62435368	45	2.0	45	90	0	140	21	22	5	50	1.70
62438807--62438873	35	1.9	35	87	3	100	31	10	13	44	1.77
62438822--62438861	20	2.0	20	85	0	53	27	12	12	47	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62440405--62440429	13	1.9	13	100	0	50	48	8	16	28	1.74
62440941--62440981	17	2.5	17	80	11	50	34	0	0	65	0.93
62442113--62442147	15	2.3	15	100	0	70	17	14	14	54	1.72
62442402--62442461	9	6.6	9	72	11	50	68	10	6	15	1.38
62442402--62442461	27	2.2	28	85	8	79	68	10	6	15	1.38
62442497--62442541	20	2.2	21	88	4	65	53	0	2	44	1.13
62442592--62442622	13	2.5	13	94	5	55	54	3	0	41	1.16
62445809--62445853	16	2.8	16	83	6	56	51	2	11	35	1.50
62452379--62452424	22	2.1	22	84	4	58	54	0	2	43	1.12
62452660--62452730	18	3.8	18	77	19	65	28	4	2	64	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218