Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  132  of  218  ( 26060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40353714--40353784
37
1.9
37
86
11
101
2
18
2
76
1.04
40353710--40353770
16
3.8
16
77
14
63
3
19
1
75
1.03
40354728--40354753
12
2.2
12
100
0
52
15
0
7
76
0.99
40354830--40354854
12
2.1
12
100
0
50
12
0
8
80
0.92
40356465--40356561
30
3.2
30
72
8
99
28
16
26
27
1.97
40359396--40359442
20
2.3
20
85
0
67
29
36
12
21
1.91
40362350--40362412
30
2.1
30
85
5
83
76
4
14
4
1.12
40363415--40363554
6
22.3
6
65
8
64
69
2
20
7
1.27
40363416--40363509
18
5.4
18
75
7
86
69
4
19
7
1.30
40363447--40363566
12
9.6
12
74
14
75
71
4
18
5
1.22
40363415--40363569
81
1.9
83
81
6
190
68
3
20
8
1.30
40363515--40363552
13
2.8
13
82
17
51
73
0
18
7
1.06
40363516--40363566
21
2.4
21
74
6
50
74
1
17
5
1.11
40363569--40363631
33
1.9
33
84
12
85
53
6
26
12
1.62
40365259--40365305
20
2.3
20
85
0
67
29
36
12
21
1.91
40373230--40373266
10
3.7
10
92
0
56
10
5
5
78
1.08
40374120--40374191
29
2.5
29
86
8
103
69
2
15
12
1.30
40374120--40374191
28
2.5
30
84
8
96
69
2
15
12
1.30
40379788--40379881
46
2.0
46
93
4
163
35
22
18
24
1.96
40380206--40380243
19
2.0
19
100
0
76
21
21
21
36
1.95
40395432--40395490
25
2.3
25
83
13
68
62
0
5
32
1.17
40395757--40395914
49
3.2
48
95
2
273
31
7
31
30
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40396032--40396110
37
2.1
37
85
0
104
24
16
31
27
1.96
40407341--40407394
24
2.2
25
78
15
60
11
22
3
62
1.43
40409645--40409671
14
1.9
14
100
0
54
14
7
7
70
1.32
40411939--40412011
30
2.5
30
86
10
114
31
13
24
30
1.94
40411958--40412023
30
2.2
30
84
10
82
27
15
31
25
1.95
40414111--40414183
30
2.4
30
84
6
85
15
21
0
63
1.31
40414178--40414208
12
2.6
12
100
0
62
25
16
12
45
1.83
40414269--40414318
6
8.2
6
81
16
50
2
20
2
76
0.99
40414258--40414328
37
1.9
37
86
11
101
2
18
2
76
1.04
40414254--40414314
16
3.8
16
77
14
63
3
19
1
75
1.03
40423226--40423252
10
2.7
10
100
0
54
7
7
7
77
1.12
40427915--40427948
17
2.1
17
94
5
61
50
5
17
26
1.69
40428444--40428537
46
2.0
46
91
4
154
35
23
18
23
1.96
40432294--40432335
12
3.4
12
81
12
50
21
9
2
66
1.32
40432293--40432335
13
3.4
13
87
3
61
20
9
2
67
1.30
40432379--40432425
12
3.9
12
86
10
69
14
6
10
68
1.38
40432740--40432833
46
2.0
46
91
4
154
35
23
18
23
1.96
40443832--40443877
14
3.5
13
85
8
67
76
4
4
15
1.11
40443832--40443878
13
3.5
14
88
5
71
76
4
4
14
1.09
40444769--40444814
20
2.2
20
84
3
56
65
0
26
8
1.21
40444821--40444856
6
6.0
6
93
0
54
33
0
27
38
1.57
40454077--40454130
15
3.8
15
82
4
60
1
22
1
74
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40456190--40456232
12
3.6
13
82
17
58
11
4
6
76
1.13
40464060--40464117
27
2.1
29
87
6
84
68
8
15
6
1.36
40466318--40466382
20
3.3
19
73
16
51
38
16
21
23
1.93
40468394--40468459
31
2.2
31
91
2
107
24
12
33
30
1.91
40476320--40476353
17
2.1
17
88
5
52
41
26
14
17
1.88
40485382--40485424
18
2.3
19
88
4
61
6
13
2
76
1.08
40485393--40485445
21
2.7
19
83
13
56
3
16
3
75
1.10
40487905--40487976
24
3.2
23
73
9
60
27
4
29
38
1.75
40495320--40495364
21
2.2
20
88
4
63
28
35
11
24
1.90
40495318--40495365
15
3.1
16
79
11
55
31
33
12
22
1.91
40496887--40496942
20
2.7
20
86
5
67
82
3
8
5
0.94
40497962--40498062
47
2.2
46
82
12
118
59
1
23
14
1.46
40499724--40499770
20
2.3
20
85
0
67
29
36
12
21
1.91
40506163--40506198
4
9.0
4
90
9
56
72
2
0
25
0.98
40506163--40506204
19
2.2
19
91
8
68
73
2
0
23
0.94
40506168--40506204
15
2.5
15
95
4
67
75
0
0
24
0.80
40507551--40507603
23
2.4
22
76
20
56
9
18
1
69
1.25
40509912--40509944
4
8.0
4
96
3
57
72
3
0
24
0.98
40510812--40510873
10
5.9
10
74
10
52
33
32
3
30
1.74
40510812--40510874
21
3.0
21
88
2
90
33
33
3
30
1.74
40511899--40511932
15
2.3
15
89
0
50
35
29
32
2
1.73
40515612--40515673
10
5.9
10
74
10
52
33
32
3
30
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40515612--40515674
21
3.0
21
88
2
90
33
33
3
30
1.74
40522074--40522122
15
3.5
15
70
13
50
2
18
2
77
0.96
40522082--40522125
6
6.8
6
80
14
52
2
18
2
77
0.98
40524200--40524243
12
3.7
12
81
6
54
13
4
4
77
1.08
40537910--40537964
20
2.8
20
88
0
83
25
29
16
29
1.97
40539759--40539800
11
3.7
11
93
6
75
78
7
0
14
0.95
40539759--40539801
12
3.7
12
96
3
79
79
6
0
13
0.93
40540803--40540841
15
2.4
15
87
12
51
66
2
20
10
1.33
40542324--40542378
20
2.8
20
88
0
83
25
29
16
29
1.97
40544676--40544740
20
3.3
19
73
16
51
38
16
21
23
1.93
40546156--40546206
22
2.3
21
83
6
57
37
33
1
27
1.68
40546161--40546223
21
3.0
21
83
6
65
34
31
3
30
1.74
40548442--40548506
30
2.1
31
91
2
105
24
12
33
29
1.92
40551721--40551765
23
1.9
24
86
4
65
35
4
13
46
1.63
40553572--40553618
20
2.3
20
85
0
67
29
36
12
21
1.91
40558001--40558047
20
2.3
20
85
0
67
29
36
12
21
1.91
40559535--40559559
9
2.8
9
100
0
50
80
0
12
8
0.92
40559965--40559996
4
8.0
4
100
0
64
25
0
0
75
0.81
40563763--40563790
4
7.0
4
100
0
56
25
0
0
75
0.81
40574439--40574483
2
22.5
2
100
0
90
48
0
0
51
1.00
40574655--40574692
17
2.2
17
90
0
58
31
5
0
63
1.17
40579250--40579397
67
2.2
67
86
0
215
22
16
18
41
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40579269--40579416
67
2.2
67
83
0
179
23
18
16
41
1.90
40582696--40582734
10
3.9
10
80
12
53
48
0
5
46
1.24
40582778--40582861
29
2.8
28
75
16
80
33
2
1
63
1.15
40582797--40582843
10
4.7
10
76
7
51
27
2
0
70
0.99
40582778--40582844
21
3.3
20
76
12
66
32
1
1
64
1.12
40585879--40586006
41
3.2
41
81
8
172
27
11
4
56
1.55
40585879--40585990
39
2.8
41
84
9
149
26
12
5
55
1.58
40586937--40586995
29
2.0
30
83
9
77
30
6
8
54
1.57
40587969--40588039
28
2.6
27
88
4
115
43
9
1
45
1.46
40591447--40591484
16
2.4
16
90
0
58
31
0
34
34
1.58
40591463--40591572
45
2.6
43
80
9
129
33
6
28
31
1.82
40591717--40591751
18
2.0
17
88
5
52
54
0
0
45
0.99
40591633--40591907
151
1.8
150
96
2
509
46
3
3
46
1.35
40591880--40592065
60
3.1
60
68
17
179
50
5
2
41
1.39
40591954--40592014
15
4.4
13
77
18
61
60
0
0
39
0.97
40591854--40592137
119
2.4
120
91
4
452
49
4
2
43
1.35
40593468--40593501
15
2.3
15
90
5
52
67
23
5
2
1.26
40594693--40594726
15
2.3
15
89
0
50
47
5
17
29
1.71
40598004--40598156
50
3.1
50
80
4
184
28
15
26
29
1.96
40598156--40598244
45
2.0
45
93
0
151
24
16
24
33
1.96
40606045--40606086
20
2.2
19
83
12
50
64
2
16
16
1.40
40606535--40606564
16
1.9
16
93
6
53
30
0
20
50
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40614020--40614086
20
3.3
20
77
6
64
37
5
7
49
1.56
40616044--40616095
23
2.5
20
77
22
61
36
5
15
42
1.71
40616050--40616108
23
2.6
22
84
12
84
33
3
18
44
1.67
40620012--40620047
15
2.5
14
86
8
54
44
8
0
47
1.33
40622706--40623126
140
3.0
140
92
0
707
20
17
25
36
1.94
40624303--40624357
23
2.5
21
82
8
56
38
3
16
41
1.66
40625643--40625674
13
2.5
13
94
0
55
46
0
0
53
1.00
40629663--40629860
95
2.1
95
92
0
324
24
16
26
32
1.96
40629748--40630011
113
2.3
114
87
2
370
21
18
28
31
1.97
40630547--40631481
391
2.4
390
88
5
1331
29
4
23
41
1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218