genome.fa.s23.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  106  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30710151--30710207	15	3.5	15	76	17	60	49	1	3	45	1.29
30730698--30730769	36	2.0	36	94	0	126	23	25	29	22	1.99
30731711--30731962	88	2.8	92	88	8	376	39	15	6	37	1.74
30732134--30732186	9	6.0	9	80	12	56	67	1	3	26	1.17
30732148--30732266	20	6.3	19	68	12	59	66	3	2	27	1.20
30732143--30732232	28	3.2	27	78	10	92	66	3	1	28	1.14
30732169--30732249	30	2.7	29	73	19	69	67	2	1	28	1.11
30732558--30732713	9	17.6	9	65	17	67	29	3	1	65	1.19
30732536--30732576	21	2.0	21	90	9	66	24	2	4	68	1.22
30732632--30732697	20	3.1	21	82	4	62	36	0	1	62	1.05
30732632--30732688	21	2.8	20	81	7	69	40	0	0	59	0.97
30732775--30732812	20	1.9	20	88	0	58	36	7	21	34	1.82
30734668--30734701	18	1.9	18	88	5	52	55	0	14	29	1.40
30736414--30736721	69	4.5	66	80	7	204	43	22	11	23	1.84
30736414--30736761	35	10.1	34	75	7	267	43	22	10	23	1.85
30736470--30736761	69	4.2	68	87	1	341	43	21	10	23	1.84
30736483--30736761	35	8.1	34	81	3	308	43	20	10	25	1.83
30736503--30736761	138	1.9	138	92	0	437	43	21	10	24	1.84
30737106--30737138	17	1.9	17	88	11	50	6	36	12	45	1.66
30737246--30737277	15	2.1	15	94	0	55	25	21	6	46	1.74
30738393--30738748	43	8.3	43	75	5	258	40	22	14	22	1.90
30738393--30738825	86	5.1	85	79	3	368	40	22	14	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30738395--30738634	129	1.9	128	83	2	311	40	22	14	22	1.90
30738395--30738664	129	2.1	128	81	3	310	40	23	14	21	1.90
30743725--30743761	13	2.6	15	91	8	60	56	16	13	13	1.67
30743725--30743767	15	3.0	14	83	12	52	58	13	11	16	1.64
30750783--30750825	15	3.1	13	84	15	59	60	13	9	16	1.58
30755195--30755258	24	2.7	22	77	13	74	62	4	0	32	1.16
30759731--30759774	23	1.9	23	90	0	70	15	15	29	38	1.89
30759730--30759781	23	2.3	22	83	9	68	13	15	30	40	1.86
30765537--30765589	25	2.0	27	82	7	65	28	16	5	49	1.69
30772576--30772615	17	2.4	17	82	0	53	57	0	2	40	1.12
30772861--30772905	21	2.1	21	83	0	54	31	26	0	42	1.56
30772834--30772888	16	3.4	16	82	5	67	36	23	3	36	1.73
30777638--30777731	27	3.5	27	81	5	109	37	10	21	30	1.87
30777626--30777731	54	2.0	54	84	0	140	37	11	22	28	1.89
30780337--30780399	19	3.2	20	71	6	67	34	19	28	17	1.94
30780304--30780550	39	6.3	39	83	0	287	34	18	29	17	1.94
30780407--30780508	20	5.2	20	64	17	61	32	15	31	20	1.94
30787594--30787832	39	6.1	39	85	0	298	18	29	17	33	1.94
30787595--30787696	20	5.2	20	64	13	68	21	32	13	32	1.92
30787588--30787832	78	3.1	78	84	2	330	18	29	17	34	1.94
30789028--30789077	26	1.9	26	100	0	100	32	16	6	46	1.71
30789474--30789621	75	2.0	75	90	2	235	46	10	13	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30789600--30790010	128	3.1	134	80	9	437	41	7	6	45	1.58
30796855--30796901	18	2.5	20	79	6	53	21	2	8	68	1.27
30801884--30802110	111	2.0	111	90	0	355	32	12	16	37	1.87
30802141--30802446	42	7.3	42	84	1	371	27	20	23	27	1.99
30802141--30802476	126	2.7	126	83	2	435	28	20	23	27	1.99
30811951--30812690	47	15.4	47	90	3	1030	33	9	28	28	1.88
30811951--30812631	145	4.7	145	91	4	1086	33	8	28	29	1.87
30812808--30812886	37	2.1	37	88	0	113	25	18	30	25	1.98
30813682--30813776	47	2.0	47	95	0	172	38	14	18	27	1.90
30826461--30826494	7	4.9	7	96	0	59	41	2	14	41	1.61
30827846--30827884	12	3.2	12	92	7	62	15	38	17	28	1.91
30834738--30835101	183	2.0	183	93	0	620	23	27	18	30	1.98
30838342--30838408	29	2.4	28	80	9	82	26	1	11	59	1.41
30847091--30847129	17	2.2	18	86	13	55	53	7	7	30	1.57
30847718--30847873	28	5.6	28	80	4	163	26	13	23	36	1.92
30847710--30847872	55	2.9	55	82	5	186	27	13	23	35	1.92
30847718--30847873	83	1.9	84	86	6	228	26	13	23	36	1.92
30849665--30849705	19	2.1	20	86	4	57	31	0	14	53	1.41
30852564--30852609	24	1.9	24	82	8	58	54	13	10	21	1.69
30866036--30866072	19	1.9	19	88	0	56	64	0	8	27	1.21
30881318--30881361	21	2.0	22	86	4	63	20	6	40	31	1.79
30881332--30881361	11	2.7	11	89	0	51	23	3	46	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30892821--30892863	22	2.0	22	95	0	77	34	25	9	30	1.87
30893543--30893592	22	2.3	22	82	0	55	28	14	4	54	1.58
30900508--30900963	110	4.2	109	86	3	612	31	13	22	32	1.93
30905941--30906132	50	3.8	50	86	2	269	27	22	28	21	1.99
30905946--30906171	50	4.5	50	84	1	204	28	22	26	22	1.99
30908129--30908207	37	2.1	37	90	0	122	25	31	18	24	1.98
30908326--30909004	47	14.1	47	90	3	971	28	28	9	33	1.88
30908379--30909004	145	4.3	141	92	4	1000	29	28	8	33	1.87
30913755--30913832	20	3.9	20	66	3	50	34	16	30	17	1.93
30913794--30914074	120	2.3	120	87	4	415	37	16	28	17	1.92
30913804--30914074	40	6.8	40	86	4	359	38	16	28	17	1.91
30924407--30924446	18	2.2	18	86	0	53	65	2	25	7	1.32
30926027--30926063	19	1.9	19	89	10	58	40	29	13	16	1.86
30934510--30934555	22	2.2	22	92	7	78	17	34	13	34	1.88
30934527--30934666	29	4.8	29	78	5	122	27	27	10	35	1.90
30936184--30936224	21	2.0	21	95	0	73	51	9	12	26	1.70
30940545--30940827	140	2.0	140	97	0	530	34	13	13	38	1.84
30944182--30944278	40	2.4	41	92	1	160	15	20	31	31	1.94
30944424--30944474	23	2.2	23	100	0	102	60	3	7	27	1.42
30944714--30944742	14	2.0	15	93	6	51	31	0	34	34	1.58
30944945--30945010	7	9.4	7	78	6	53	21	1	42	34	1.62
30944945--30944990	21	2.2	21	88	7	67	17	0	45	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30946289--30946326	16	2.3	17	95	4	69	2	13	21	63	1.42
30949940--30949995	27	2.1	27	83	6	69	26	8	1	62	1.35
30950183--30950407	43	5.3	42	80	6	222	23	17	30	28	1.97
30950176--30950391	86	2.5	85	83	4	256	24	16	30	28	1.96
30956582--30956662	20	4.0	19	78	10	81	53	12	14	19	1.73
30958716--30958755	16	2.5	16	91	0	62	47	2	7	42	1.45
30958744--30958886	68	2.1	67	94	2	261	41	4	9	45	1.55
30958828--30958855	9	3.1	9	100	0	56	32	0	10	57	1.33
30963705--30963767	26	2.4	26	86	2	90	52	0	1	46	1.10
30965691--30965727	20	2.0	20	84	10	51	0	13	2	83	0.74
30966758--30966800	10	4.2	10	80	13	52	72	0	6	20	1.08
30966766--30966828	6	10.8	6	78	11	53	77	0	4	17	0.93
30966766--30966827	25	2.7	22	71	23	56	79	0	4	16	0.90
30967402--30967440	19	2.1	19	100	0	78	38	15	15	30	1.88
30971505--30971545	22	2.0	20	90	9	64	21	14	19	43	1.87
30976447--30976504	22	2.7	21	82	12	64	29	20	17	32	1.95
30977028--30977160	68	2.0	68	84	3	178	43	3	9	44	1.51
30993935--30993983	21	2.3	22	82	7	64	36	4	4	55	1.38
30993946--30993990	21	2.1	21	87	0	63	37	4	4	53	1.41
30996974--30997033	30	2.0	30	90	3	95	43	0	1	55	1.10
30997409--30997455	8	5.5	8	77	22	51	46	0	0	53	1.00
30997522--30997556	18	1.9	17	88	11	52	42	5	0	51	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31001958--31002004	16	3.0	16	78	9	53	48	2	6	42	1.40
31010165--31010240	24	3.2	24	77	3	73	42	7	26	23	1.81
31011221--31011286	24	2.8	24	92	0	96	40	7	27	24	1.82
31011609--31011671	32	2.0	30	87	6	90	58	0	0	41	0.98
31014327--31014511	79	2.3	81	82	7	218	25	22	26	25	2.00
31014327--31014511	40	4.7	40	80	6	198	25	22	26	25	2.00
31014328--31014544	79	2.7	79	79	7	183	26	21	26	25	2.00
31032868--31032929	24	2.6	24	86	0	79	25	32	24	17	1.97
31033401--31033427	14	1.9	14	100	0	54	29	3	14	51	1.60
31049838--31050070	122	1.9	119	79	11	260	40	5	11	42	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218