genome.fa.s23.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  145  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44184348--44184390	9	4.8	9	88	8	61	27	0	4	67	1.10
44184347--44184395	18	2.8	18	82	11	66	28	0	4	67	1.09
44199577--44199702	61	2.0	62	96	1	236	29	11	16	42	1.84
44200619--44200651	5	6.6	5	100	0	66	60	0	0	39	0.97
44200679--44200721	23	2.0	22	86	9	61	44	6	4	44	1.52
44205558--44205595	19	2.0	19	100	0	76	15	31	15	36	1.90
44225346--44225517	84	2.0	86	96	3	321	23	23	24	27	2.00
44226688--44227024	101	3.4	99	76	10	305	44	13	9	33	1.75
44230036--44230077	23	1.9	22	85	9	59	42	7	4	45	1.52
44231526--44231576	9	5.6	9	80	15	52	29	0	3	66	1.09
44231525--44231575	20	2.7	19	80	11	61	29	0	3	66	1.09
44238817--44238908	25	3.8	25	69	13	75	26	20	11	41	1.87
44242139--44242173	17	2.0	18	88	5	54	45	0	11	42	1.40
44254508--44254552	21	2.1	22	84	12	58	51	0	6	42	1.28
44255258--44255321	31	2.1	31	96	0	119	43	6	10	39	1.65
44258762--44258806	23	2.0	23	91	4	74	60	0	0	40	0.97
44261627--44261654	3	9.3	3	100	0	56	35	0	0	64	0.94
44262888--44262964	22	3.4	22	67	19	68	35	2	25	36	1.70
44262883--44262978	46	2.1	46	100	0	192	34	2	22	40	1.66
44267426--44267502	22	3.4	22	70	19	77	35	3	27	33	1.75
44267424--44267513	46	2.0	45	97	2	171	35	3	25	35	1.73
44268396--44268454	30	2.0	30	93	0	100	61	10	1	27	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44276302--44276448	40	3.7	40	83	5	120	25	27	21	25	2.00
44276348--44276528	80	2.3	80	83	9	219	27	27	20	23	1.99
44276345--44276528	40	4.6	40	81	7	196	28	27	20	23	1.99
44278031--44278055	3	8.3	3	100	0	50	68	0	0	32	0.90
44290645--44290827	40	4.7	40	81	11	209	24	22	28	25	1.99
44290697--44290850	80	2.0	76	82	11	186	25	20	27	25	1.99
44298860--44299043	40	4.7	38	80	8	174	24	21	28	25	1.99
44298860--44299041	79	2.3	81	82	8	205	24	21	28	25	1.99
44298913--44299066	79	2.0	77	81	8	177	25	19	27	26	1.99
44302349--44302402	28	1.9	28	100	0	108	27	40	7	24	1.81
44308690--44308913	40	5.7	40	85	6	287	24	22	27	25	2.00
44308690--44308913	79	2.8	80	84	8	271	24	22	27	25	2.00
44308690--44308946	79	3.3	79	82	8	222	25	21	27	24	1.99
44316863--44317047	40	4.6	39	78	9	162	24	22	27	25	2.00
44316916--44317080	79	2.1	79	82	6	192	26	20	26	26	1.99
44322630--44322681	3	17.3	3	92	7	88	67	0	0	32	0.91
44337424--44337743	156	2.1	156	96	0	595	35	8	19	36	1.82
44338499--44338689	55	3.5	53	82	8	168	32	16	20	29	1.95
44338566--44338656	29	3.2	29	73	14	100	34	17	17	30	1.93
44341645--44341696	25	2.0	26	85	3	70	44	9	3	42	1.55
44341802--44341859	17	3.6	17	77	11	68	56	1	1	39	1.19
44347836--44347881	21	2.1	21	84	8	56	56	0	6	36	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44347827--44347887	32	1.9	32	86	6	88	59	0	4	36	1.19
44352960--44352984	5	5.0	5	100	0	50	80	0	0	20	0.72
44353765--44354487	44	16.7	44	69	14	364	25	20	22	32	1.98
44353853--44354223	85	4.3	85	69	11	252	25	19	22	31	1.98
44353748--44354399	129	5.1	129	87	0	914	25	19	22	31	1.98
44353748--44354484	129	5.7	127	83	4	816	25	20	22	32	1.98
44354727--44354849	44	2.8	44	92	0	210	28	25	17	28	1.98
44362419--44362462	22	2.0	22	87	12	65	18	11	40	29	1.85
44377312--44377350	20	1.9	21	89	5	62	43	0	17	38	1.50
44381194--44381430	49	4.8	49	74	6	158	27	14	31	26	1.95
44382536--44382564	14	2.0	15	93	6	51	13	3	0	82	0.79
44383354--44383407	26	2.1	26	82	0	63	31	3	3	61	1.31
44389668--44391006	143	9.4	143	87	1	1804	30	20	21	27	1.98
44390111--44390333	44	4.8	43	68	14	113	29	21	22	26	1.99
44390971--44391085	44	2.6	44	79	8	144	30	23	18	27	1.97
44391844--44391902	30	1.9	31	86	3	84	47	3	20	28	1.66
44396817--44396879	24	2.7	23	85	5	72	28	0	3	68	1.05
44403121--44403196	26	2.9	26	69	11	66	38	5	0	56	1.22
44405292--44405328	17	2.2	17	90	9	58	56	8	0	35	1.29
44405411--44405455	18	2.3	20	75	17	51	62	8	8	20	1.51
44405509--44405548	3	13.7	3	94	5	73	67	0	0	32	0.91
44405502--44405548	23	2.0	23	92	8	78	65	2	0	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44407081--44407509	44	9.5	44	76	7	317	29	19	17	33	1.95
44407089--44407499	89	4.6	88	78	6	340	30	19	16	34	1.94
44408280--44408343	28	2.3	27	86	2	92	64	0	0	35	0.94
44410436--44410485	23	2.1	24	88	3	75	28	8	4	60	1.43
44415248--44415289	9	4.7	9	88	11	68	90	9	0	0	0.45
44415245--44415289	19	2.4	19	92	7	74	88	11	0	0	0.50
44415246--44415289	17	2.5	17	88	3	70	90	9	0	0	0.44
44415246--44415289	1	44.0	1	81	0	52	90	9	0	0	0.44
44416903--44417188	44	6.6	42	72	13	156	29	20	22	27	1.99
44417201--44417742	132	4.1	132	91	1	802	28	18	23	30	1.97
44417306--44417491	44	4.2	44	67	13	112	29	18	23	27	1.98
44417306--44417520	44	4.9	44	68	4	110	29	19	23	27	1.98
44419141--44419191	22	2.3	23	86	3	77	31	7	3	56	1.46
44420366--44420765	199	2.0	199	98	0	773	38	12	10	39	1.78
44425395--44425678	141	2.0	141	93	1	489	34	21	13	30	1.92
44431389--44431456	27	2.6	25	80	8	82	22	26	16	35	1.94
44431494--44431586	25	3.7	26	72	12	77	24	23	18	33	1.97
44432935--44432979	23	2.0	23	86	8	65	24	2	22	51	1.60
44437534--44437762	41	5.6	41	93	0	368	27	21	28	22	1.99
44444531--44444718	41	4.6	41	91	0	295	27	21	28	22	1.99
44445883--44445936	17	3.2	16	75	19	56	25	3	11	59	1.48
44449187--44449229	18	2.4	19	85	14	65	62	0	9	27	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44449190--44449228	17	2.3	17	91	8	62	61	0	10	28	1.28
44453550--44455184	687	2.4	661	79	9	1725	37	10	10	41	1.75
44454870--44454934	29	2.2	28	81	10	78	56	3	3	36	1.30
44459197--44459302	53	2.0	53	84	0	140	35	14	13	36	1.85
44460367--44460420	19	2.8	20	75	13	58	12	9	3	74	1.20
44465134--44465197	30	2.1	31	94	2	112	40	7	26	25	1.82
44465132--44465182	15	3.3	16	72	10	61	43	7	25	23	1.81
44469772--44469835	30	2.1	31	91	2	103	40	4	25	29	1.76
44469770--44469820	15	3.3	16	75	10	61	43	5	23	27	1.77
44475369--44475415	18	2.5	19	89	3	78	36	6	0	57	1.24
44475551--44475607	30	1.9	29	89	3	87	31	14	3	50	1.59
44479381--44479454	12	6.5	11	78	10	69	79	0	20	0	0.73
44479381--44479447	32	2.1	32	86	10	93	79	0	20	0	0.74
44479381--44479452	26	2.8	24	79	12	72	79	0	20	0	0.74
44479381--44479447	16	4.2	16	83	10	84	79	0	20	0	0.74
44480769--44481596	50	16.6	50	67	7	304	33	23	19	23	1.97
44480757--44481981	100	12.4	100	84	1	1295	33	22	20	23	1.97
44481734--44482032	49	6.1	48	67	6	190	34	22	19	24	1.97
44481813--44482102	145	2.0	148	84	4	381	33	23	19	24	1.97
44482218--44482434	85	2.5	85	94	0	371	35	16	19	29	1.94
44482255--44482387	41	3.2	41	64	10	115	33	16	19	30	1.94
44484178--44484224	18	2.5	19	89	3	78	36	6	0	57	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44484360--44484416	30	1.9	29	89	3	87	31	14	3	50	1.59
44487444--44487470	4	6.8	4	100	0	54	77	0	22	0	0.76
44489094--44490422	50	26.7	50	68	8	694	31	23	21	22	1.98
44489085--44490322	100	12.4	100	88	1	1522	32	23	21	23	1.98
44491660--44491711	26	2.0	26	84	0	68	61	3	0	34	1.14
44492439--44492493	18	2.8	19	86	13	76	36	7	0	56	1.27
44499184--44499274	36	2.5	37	85	5	114	37	20	16	25	1.93
44501005--44501201	97	2.0	98	93	1	333	43	15	17	23	1.87
44506736--44506777	22	2.0	21	95	4	75	35	14	19	30	1.91
44509497--44509570	27	2.8	27	80	10	89	28	16	8	47	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218