genome.fa.s23.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  190  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56474463--56474608	21	7.0	21	79	0	157	15	23	17	43	1.88
56474465--56474596	42	3.1	42	85	0	183	15	23	17	43	1.86
56477231--56477866	212	3.0	212	96	0	1157	42	7	30	19	1.79
56482524--56482586	33	1.9	33	96	0	117	41	12	15	30	1.85
56484957--56485037	40	2.0	40	92	0	135	30	8	13	46	1.73
56485164--56485208	20	2.2	21	92	4	74	22	0	20	57	1.40
56488365--56488422	29	2.0	28	84	15	75	24	13	8	53	1.68
56497059--56497288	118	2.0	118	93	0	399	42	12	14	30	1.82
56497627--56497675	9	5.4	9	82	0	62	26	10	22	40	1.86
56497632--56497675	18	2.4	18	92	0	70	25	11	25	38	1.89
56498778--56498910	72	1.9	68	86	10	171	41	3	3	52	1.32
56500304--56500347	20	2.2	20	83	4	52	4	40	4	50	1.43
56500687--56500725	2	19.5	2	100	0	78	0	48	0	51	1.00
56501588--56501770	89	2.1	89	100	0	366	27	14	14	43	1.85
56511862--56511914	11	4.7	11	77	11	54	22	28	0	49	1.50
56511972--56512017	19	2.4	19	74	0	56	41	0	0	58	0.98
56520605--56520660	21	2.5	22	75	13	53	60	0	0	39	0.97
56521454--56521487	18	1.9	18	94	5	61	50	0	8	41	1.34
56521454--56521489	19	1.9	18	88	5	54	52	0	8	38	1.32
56521908--56521968	23	2.6	23	80	10	70	54	6	0	39	1.27
56525054--56525092	21	2.0	19	85	14	53	51	5	23	20	1.67
56526771--56526932	80	2.0	80	98	0	315	43	8	22	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56527851--56527948	11	8.9	11	67	18	53	53	4	2	40	1.32
56527854--56527946	37	2.8	31	77	19	105	53	4	2	39	1.32
56528254--56528291	19	2.0	19	94	0	67	23	21	7	47	1.77
56535357--56535382	13	2.0	13	100	0	52	53	0	0	46	1.00
56540883--56540917	6	5.8	6	100	0	70	68	0	31	0	0.90
56540884--56540923	18	2.2	18	90	0	62	72	0	25	2	0.97
56545740--56545849	25	4.4	25	74	4	87	21	28	17	32	1.96
56545763--56545861	25	4.0	25	72	7	76	23	28	17	31	1.97
56545791--56545874	25	3.4	24	78	3	87	23	29	20	26	1.99
56545790--56545891	50	2.1	49	85	5	134	24	27	19	28	1.99
56545806--56545906	49	2.0	50	81	5	116	26	26	18	27	1.98
56548875--56548909	18	2.0	18	88	5	54	22	14	17	45	1.84
56550433--56550459	9	3.0	9	100	0	54	22	11	22	44	1.84
56552839--56552945	6	16.0	6	73	19	70	6	0	70	23	1.11
56552831--56552943	21	5.1	21	83	14	156	7	0	68	24	1.15
56552862--56552960	26	4.0	26	76	17	102	8	0	67	24	1.17
56552913--56552955	15	3.1	15	78	21	58	4	0	69	25	1.07
56554404--56554449	21	2.2	21	84	0	56	4	21	0	73	1.00
56555051--56555114	30	2.1	32	88	5	96	18	3	17	60	1.48
56565337--56565371	18	1.9	18	94	0	61	17	25	22	34	1.96
56572916--56572966	17	2.7	19	79	17	61	25	15	17	41	1.89
56578240--56578307	14	4.9	14	77	8	50	52	0	13	33	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56578254--56578308	21	2.7	20	86	5	74	52	0	12	34	1.40
56578316--56578380	28	2.3	29	84	7	89	47	0	30	21	1.51
56581141--56581193	21	2.5	21	100	0	106	28	43	9	18	1.81
56587736--56587793	9	6.4	9	91	0	71	24	6	22	46	1.76
56588153--56588212	30	2.0	30	100	0	120	16	26	16	40	1.90
56590187--56590215	3	9.7	3	100	0	58	31	0	0	68	0.89
56590295--56590328	16	2.2	15	89	5	50	41	0	0	58	0.98
56590648--56590691	19	2.4	18	80	3	52	52	2	9	36	1.46
56590664--56591069	108	3.7	108	90	2	636	29	15	19	34	1.93
56595126--56595166	8	4.7	9	80	14	50	87	4	0	7	0.65
56595126--56595166	9	4.8	9	82	8	50	87	4	0	7	0.65
56595126--56595171	16	2.8	16	84	15	67	84	6	0	8	0.77
56595175--56595226	22	2.5	20	81	12	61	76	0	21	1	0.87
56595183--56595220	16	2.4	15	87	12	58	84	0	15	0	0.63
56595184--56595222	11	3.5	11	82	10	53	82	0	17	0	0.68
56596031--56596063	9	3.9	9	84	15	52	75	0	12	12	1.04
56596031--56596063	16	2.1	16	100	0	66	75	0	12	12	1.04
56597284--56598348	87	12.2	87	87	4	1135	29	21	22	25	1.99
56597284--56598348	173	6.1	174	84	4	1142	29	21	22	25	1.99
56597555--56597692	43	3.2	43	63	19	115	25	18	24	31	1.98
56597684--56597822	43	3.2	43	64	20	108	32	25	18	23	1.97
56597284--56598348	259	4.1	263	86	4	1213	29	21	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56597890--56598041	44	3.5	43	66	11	119	25	22	25	26	2.00
56597834--56598042	45	4.8	43	65	13	113	26	21	25	26	1.99
56597978--56598289	44	7.1	44	68	18	177	28	23	24	24	2.00
56599959--56599987	3	9.7	3	100	0	58	31	0	0	68	0.89
56600067--56600100	16	2.2	15	89	5	50	41	0	0	58	0.98
56600412--56600455	19	2.4	18	80	3	52	52	2	9	36	1.46
56600428--56600833	108	3.7	108	92	1	677	29	15	19	34	1.93
56604553--56604582	15	2.0	15	93	0	51	63	0	13	23	1.29
56614687--56614758	17	4.2	18	74	15	62	2	26	0	70	1.00
56615264--56615460	63	3.1	63	81	4	209	21	19	30	28	1.97
56619456--56619554	33	3.0	33	93	0	171	45	6	13	35	1.68
56619483--56619537	18	3.2	18	66	23	55	47	5	12	34	1.65
56619502--56619557	15	3.2	19	64	23	50	48	5	14	32	1.66
56620912--56620943	12	2.8	12	95	4	57	25	0	0	75	0.81
56627562--56627593	17	1.9	17	93	6	57	34	0	3	62	1.11
56627934--56628037	3	34.7	3	100	0	208	66	0	33	0	0.92
56637123--56637172	19	2.7	18	78	6	64	52	2	0	46	1.12
56637528--56637591	26	2.5	26	84	0	74	43	3	4	48	1.39
56639482--56639547	33	2.0	33	93	0	114	51	4	10	33	1.57
56640107--56640137	3	10.7	3	93	6	55	35	0	0	64	0.94
56640196--56640236	16	2.4	16	88	8	55	82	14	0	2	0.76
56641383--56641425	20	2.2	20	83	8	52	25	2	0	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56649591--56649651	27	2.3	27	85	0	77	37	22	13	26	1.91
56650853--56650940	44	2.0	44	93	0	149	29	34	7	28	1.86
56654291--56654340	25	2.0	25	100	0	100	32	16	20	32	1.94
56658365--56658392	3	9.3	3	100	0	56	35	0	0	64	0.94
56661816--56661848	12	2.7	13	86	13	52	18	0	0	81	0.68
56661816--56661846	16	1.9	16	93	0	53	16	0	0	83	0.64
56661757--56661897	64	2.3	59	79	8	138	21	3	5	68	1.26
56663881--56663911	4	7.8	4	92	0	53	70	0	3	25	1.02
56671545--56671661	42	2.8	42	80	12	141	33	20	14	31	1.93
56671630--56671723	44	2.2	44	84	5	120	29	14	23	31	1.95
56675883--56675984	28	3.5	28	76	15	80	29	24	23	22	1.99
56676079--56676133	26	2.1	26	89	0	83	36	21	21	20	1.95
56676322--56676445	27	4.6	27	86	0	176	13	20	22	42	1.87
56677808--56677904	45	2.2	44	80	10	124	28	18	15	37	1.92
56685919--56685956	19	2.0	20	84	5	51	47	2	18	31	1.62
56690944--56690976	17	1.9	17	93	0	57	15	6	12	66	1.42
56691657--56691852	98	2.0	97	94	1	347	37	24	9	28	1.86
56692128--56692152	9	2.8	9	100	0	50	68	8	0	24	1.16
56696358--56696433	34	2.3	33	88	6	118	43	21	18	17	1.88
56696902--56696995	23	4.1	23	87	0	143	48	4	24	22	1.68
56701402--56701495	23	4.1	23	87	0	143	48	4	24	22	1.68
56702561--56702685	22	5.7	21	72	13	67	33	15	18	32	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56702561--56702644	43	1.9	44	82	2	107	33	14	19	33	1.91
56709402--56709509	40	2.7	40	80	4	121	29	20	24	25	1.99
56709565--56709717	41	3.7	41	86	1	227	21	21	26	30	1.98
56710026--56710142	21	5.5	21	69	13	60	23	0	34	41	1.60
56710059--56710088	15	2.0	15	93	0	51	20	0	36	43	1.52
56710059--56710172	7	16.0	7	72	7	68	20	0	36	42	1.52
56710061--56710175	28	4.1	28	78	3	115	20	0	34	44	1.52
56710335--56710412	22	3.6	22	73	14	72	21	0	37	41	1.54
56710323--56710419	14	6.8	14	71	4	77	21	0	36	42	1.53
56711155--56711304	72	2.0	73	91	8	241	18	41	5	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218