genome.fa.s23.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  123  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37135984--37136054	32	2.2	32	100	0	142	45	23	8	22	1.80
37137313--37137806	44	11.3	44	69	10	199	28	24	19	27	1.98
37137195--37137828	217	2.9	218	92	0	1038	27	25	19	27	1.99
37137797--37138047	129	1.9	129	92	0	421	26	23	18	31	1.98
37138035--37138159	44	2.8	44	90	0	196	20	26	22	30	1.98
37141548--37141603	12	4.7	12	74	14	53	64	0	23	12	1.27
37144185--37144236	16	3.3	16	82	12	63	9	9	0	80	0.90
37144185--37144234	14	3.3	15	79	17	59	10	10	0	80	0.92
37145115--37145143	13	2.3	13	94	5	51	0	10	0	89	0.48
37150074--37150143	21	3.2	20	73	18	52	52	4	5	37	1.45
37150105--37150164	23	2.6	22	75	12	59	53	1	3	41	1.27
37152855--37152915	6	9.5	6	77	12	50	75	4	6	13	1.16
37152855--37152915	13	4.7	13	72	8	52	75	4	6	13	1.16
37175484--37175519	17	2.1	17	89	0	54	72	2	2	22	1.11
37179983--37180108	51	2.5	51	96	0	225	26	16	26	29	1.97
37181840--37182435	295	2.0	295	98	0	1138	28	13	20	37	1.91
37190957--37191073	27	4.4	27	81	4	121	41	22	17	18	1.91
37190957--37191103	27	5.5	27	80	4	111	38	20	19	21	1.93
37190997--37191100	26	3.9	27	83	2	95	35	23	20	21	1.96
37191102--37191351	133	1.9	133	82	5	317	34	17	22	26	1.96
37191108--37191340	54	4.4	54	82	4	292	34	18	21	26	1.95
37191108--37191340	27	8.7	27	80	1	236	34	18	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37191108--37191351	80	3.0	80	79	8	212	34	17	22	26	1.95
37191400--37191459	24	2.5	24	83	5	77	21	10	23	45	1.82
37191632--37191834	32	6.3	32	77	8	171	20	19	21	38	1.93
37191632--37191808	66	2.7	64	81	5	205	19	19	22	38	1.93
37197499--37197523	13	1.9	13	100	0	50	88	0	0	12	0.53
37201510--37202528	128	7.9	129	90	2	1507	32	19	23	23	1.98
37207532--37207565	9	3.7	9	96	4	59	17	0	8	73	1.08
37207531--37207566	10	3.7	10	92	7	65	16	0	8	75	1.04
37207853--37207913	30	2.0	30	100	0	122	32	3	29	34	1.74
37219996--37220025	14	2.1	14	100	0	60	60	33	0	6	1.23
37220356--37220405	16	2.9	17	72	19	50	28	8	2	62	1.35
37222398--37222427	12	2.5	12	94	0	51	33	40	20	6	1.78
37224348--37224396	23	2.2	23	85	3	64	38	16	10	34	1.82
37224354--37224397	23	1.9	23	90	0	70	38	15	9	36	1.80
37224355--37224404	23	2.2	23	81	0	55	42	16	10	32	1.81
37227021--37227123	42	2.5	42	80	3	118	23	26	27	23	2.00
37227927--37227988	28	2.2	29	79	2	72	27	6	11	54	1.60
37227967--37228044	28	2.8	28	80	3	86	34	12	8	43	1.74
37228183--37228214	14	2.3	14	100	0	64	31	46	15	6	1.71
37233300--37233331	14	2.3	14	100	0	64	31	46	15	6	1.71
37235462--37235841	47	8.1	47	93	0	598	28	30	9	32	1.88
37239026--37239077	25	2.1	25	82	7	61	30	28	7	32	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37239237--37239432	80	2.5	79	81	5	209	24	27	21	26	1.99
37239253--37239434	40	4.6	40	79	8	176	24	26	22	26	2.00
37239744--37239817	29	2.6	29	89	4	105	25	32	16	25	1.96
37239799--37239944	43	3.4	43	99	0	283	26	35	15	21	1.94
37241954--37242333	47	8.1	47	93	0	589	28	30	8	31	1.87
37250969--37251046	28	2.8	28	80	3	86	34	12	8	43	1.74
37254508--37254542	12	2.8	13	91	8	63	65	5	8	20	1.40
37265870--37266028	28	5.7	28	91	1	248	35	27	18	19	1.95
37266136--37266242	26	4.1	26	87	0	142	38	24	18	18	1.93
37266376--37267095	27	26.7	27	73	13	132	19	18	19	42	1.89
37266388--37267095	54	13.2	52	75	9	489	19	18	19	42	1.89
37266388--37267095	81	8.8	79	75	9	490	19	18	19	42	1.89
37285231--37285415	40	4.7	40	82	7	209	24	22	27	25	2.00
37285231--37285415	79	2.3	81	83	7	227	24	22	27	25	2.00
37285284--37285448	79	2.1	79	83	6	201	26	21	27	24	1.99
37289615--37289663	20	2.5	20	75	0	53	30	14	30	24	1.94
37290527--37290598	33	2.2	33	89	0	108	27	15	25	31	1.95
37291504--37291549	18	2.8	17	87	9	60	8	17	4	69	1.31
37295612--37295657	21	2.2	21	84	7	58	8	17	4	69	1.31
37316717--37316778	28	2.2	28	85	0	79	41	11	14	32	1.81
37322397--37322531	50	2.7	50	85	0	180	26	23	28	21	1.99
37322783--37322831	20	2.5	20	81	15	66	57	6	24	12	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37324022--37324083	28	2.2	28	85	0	79	41	9	16	32	1.80
37335440--37335494	19	2.8	20	75	5	58	34	16	21	27	1.95
37336614--37336707	46	2.0	46	93	4	163	35	22	18	24	1.96
37339532--37339566	17	2.0	17	88	5	52	14	11	0	74	1.08
37342080--37342167	46	1.9	46	90	9	144	36	20	18	25	1.95
37344956--37345014	27	2.1	27	81	9	66	11	23	1	62	1.38
37345945--37345971	14	1.9	14	100	0	54	25	14	0	59	1.36
37346007--37346038	11	2.9	11	100	0	64	28	6	0	65	1.16
37346356--37346449	46	2.0	46	95	4	172	34	22	19	24	1.97
37359452--37359510	2	29.5	2	89	0	91	0	5	49	45	1.24
37360724--37360751	4	7.0	4	100	0	56	25	0	0	75	0.81
37379993--37380075	40	2.1	40	97	0	157	32	10	19	37	1.86
37381757--37381801	20	2.2	21	96	4	83	22	8	22	46	1.79
37386398--37386460	26	2.4	26	91	2	81	19	20	19	41	1.91
37386398--37386643	27	9.1	27	79	8	236	20	18	17	43	1.89
37386417--37386643	81	2.8	81	83	5	262	20	18	17	43	1.88
37387222--37387294	34	2.1	35	84	2	94	50	12	27	9	1.71
37389321--37389375	20	2.8	20	85	0	74	25	30	14	29	1.95
37392340--37392366	5	5.4	5	100	0	54	18	0	0	81	0.69
37400016--37400069	20	2.7	20	82	0	63	24	20	18	37	1.94
37400016--37400089	30	2.5	30	86	8	98	21	20	18	39	1.93
37400016--37400080	20	3.2	20	71	16	53	23	21	16	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37405517--37405563	24	2.0	24	100	0	94	51	8	14	25	1.71
37420854--37420956	25	4.1	25	85	5	118	31	18	23	27	1.97
37420885--37420957	25	2.9	25	95	0	128	32	17	23	26	1.97
37436499--37436784	47	6.1	47	92	0	437	27	30	9	31	1.89
37445675--37445764	6	14.7	6	71	6	65	5	18	3	72	1.19
37445657--37445713	14	4.1	14	75	16	57	8	17	1	71	1.19
37446805--37446868	30	2.1	30	83	11	78	4	15	4	75	1.14
37446835--37446907	13	5.6	13	73	16	55	15	9	5	69	1.33
37451948--37452022	33	2.2	34	92	2	125	42	13	6	37	1.70
37453729--37453767	18	2.2	18	86	9	53	7	17	2	71	1.21
37459776--37459802	14	1.9	14	100	0	54	33	22	14	29	1.94
37464485--37464541	10	5.9	9	75	15	51	28	17	31	22	1.97
37464485--37464541	20	2.9	20	86	2	89	28	17	31	22	1.97
37467613--37467722	23	4.8	23	94	0	184	36	5	26	31	1.79
37468777--37468841	29	2.2	31	86	10	91	32	9	21	36	1.85
37476257--37476314	15	3.7	15	93	4	89	22	12	5	60	1.51
37476352--37476385	12	2.8	12	100	0	68	17	0	5	76	0.98
37477930--37478073	50	2.8	50	82	6	171	22	29	21	25	1.99
37484441--37484500	22	2.7	22	89	0	84	30	5	31	33	1.79
37493535--37493585	15	3.5	15	81	5	59	72	1	19	5	1.15
37500606--37500653	21	2.4	20	80	13	55	25	6	4	64	1.35
37505926--37505954	13	2.1	14	93	6	51	75	6	6	10	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37508276--37508346	20	3.5	20	81	11	83	29	14	28	28	1.95
37508719--37508780	20	3.0	20	72	9	52	51	14	4	29	1.63
37511341--37511375	10	3.5	10	96	0	61	22	31	20	25	1.98
37511340--37511385	20	2.3	20	81	7	58	21	30	21	26	1.99
37513984--37514045	28	2.2	29	83	11	76	12	14	4	67	1.38
37520168--37520230	21	3.0	21	88	2	90	30	3	33	33	1.74
37525053--37525115	21	3.0	21	88	2	90	30	3	33	33	1.74
37533304--37533364	25	2.4	26	81	8	72	24	34	6	34	1.81
37538051--37538102	23	2.3	22	75	21	54	9	23	1	65	1.32
37543312--37543390	32	2.5	32	76	0	86	48	20	10	21	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218