genome.fa.s23.2.7.7.80.10.50.1000.167.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  167  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50631472--50631528	28	2.0	28	100	0	114	52	21	10	15	1.72
50631768--50631827	24	2.5	24	81	10	70	53	6	5	35	1.49
50631932--50631981	3	16.7	3	100	0	100	68	0	0	32	0.90
50632427--50632470	12	3.8	12	85	8	65	86	0	9	4	0.70
50634701--50634740	16	2.5	16	91	0	62	47	2	7	42	1.45
50634729--50634874	66	2.1	72	86	11	205	40	5	8	45	1.59
50634879--50634923	18	2.5	18	96	0	81	28	6	6	57	1.50
50634892--50634931	18	2.4	17	87	8	55	42	7	5	45	1.54
50635043--50635108	19	3.4	19	89	4	96	66	7	6	19	1.38
50635043--50635127	39	2.2	38	85	8	109	67	8	4	20	1.36
50635275--50635307	16	2.1	16	100	0	66	69	12	0	18	1.18
50640215--50640261	9	5.6	9	75	14	55	17	0	4	78	0.90
50640973--50641025	21	2.5	21	96	0	97	20	9	41	28	1.83
50652273--50652307	12	2.9	12	82	0	52	8	0	57	34	1.29
50652268--50652351	24	3.5	24	70	0	78	15	0	52	32	1.43
50652323--50652439	12	9.5	12	76	5	72	13	0	56	29	1.38
50652281--50652378	48	2.0	48	96	0	178	18	0	51	30	1.47
50652370--50652439	6	11.2	6	85	8	50	11	0	60	28	1.32
50652347--50652405	27	2.2	27	90	0	91	22	0	50	27	1.49
50652401--50652435	3	11.7	3	100	0	70	0	0	68	31	0.90
50652370--50652451	15	5.7	14	77	12	51	14	0	58	26	1.37
50652338--50652450	27	4.1	27	67	10	66	15	0	55	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50652430--50652475	24	1.9	24	90	0	74	23	2	50	23	1.61
50665368--50665397	8	3.8	8	95	0	51	60	0	0	40	0.97
50666127--50666183	21	2.6	23	70	16	57	59	0	5	35	1.20
50672308--50672451	44	3.3	44	83	8	170	23	17	21	37	1.94
50673201--50673242	21	2.0	21	86	13	61	42	11	9	35	1.74
50674524--50674552	15	1.9	15	100	0	58	34	24	6	34	1.82
50675405--50675446	19	2.2	19	83	12	50	54	9	9	26	1.63
50679855--50679884	14	2.1	14	100	0	60	46	20	6	26	1.75
50682449--50682498	21	2.6	19	80	20	59	60	0	4	36	1.16
50682465--50682508	11	4.1	11	85	5	63	61	0	2	36	1.09
50683082--50683140	11	5.5	11	80	8	59	33	1	0	64	1.04
50683072--50683141	21	3.3	21	78	13	81	34	1	1	62	1.13
50683064--50683126	10	6.2	10	85	9	83	34	0	1	63	1.04
50684208--50684240	17	2.0	17	88	5	50	51	9	9	30	1.64
50693223--50693413	36	5.0	36	83	14	240	37	13	19	28	1.90
50693187--50693377	82	2.3	81	94	1	328	37	12	20	28	1.90
50693333--50693398	21	3.5	20	63	25	52	34	12	19	33	1.89
50700596--50700786	36	5.0	36	81	12	229	37	12	20	29	1.89
50700562--50700750	82	2.3	82	95	0	333	38	11	21	29	1.88
50707150--50707197	7	6.7	7	77	13	53	66	2	14	16	1.34
50707150--50707211	15	4.3	15	76	17	51	66	1	16	16	1.34
50707149--50707205	21	2.6	21	83	8	69	66	1	15	15	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50708727--50709052	44	7.4	44	67	12	193	28	16	25	28	1.97
50708808--50709122	44	7.2	44	65	17	127	28	18	23	29	1.98
50708398--50709146	132	5.7	132	90	0	1104	29	18	23	28	1.98
50709138--50709278	44	3.2	44	85	4	185	29	14	27	28	1.95
50709297--50709442	44	3.4	44	72	9	147	29	20	25	24	1.99
50709284--50709442	85	1.9	85	88	2	239	28	22	23	25	1.99
50713081--50713129	21	2.3	21	100	0	98	42	14	14	28	1.84
50724408--50724483	36	2.1	36	92	0	125	46	1	2	50	1.24
50737934--50738607	105	6.4	105	81	1	699	34	13	17	34	1.89
50747035--50747389	44	7.6	44	70	17	198	27	21	19	31	1.97
50746895--50747389	142	3.5	142	92	0	796	27	21	18	31	1.97
50747180--50747361	98	1.9	98	81	6	226	26	20	20	32	1.97
50766614--50766652	20	2.0	20	89	0	60	15	33	17	33	1.92
50767956--50768049	25	3.8	25	70	16	77	29	22	21	26	1.99
50774426--50774512	25	3.5	25	70	17	72	26	20	24	28	1.99
50776153--50776232	20	4.0	20	86	1	115	16	32	12	38	1.86
50776154--50776232	40	2.0	41	94	2	142	16	32	12	37	1.86
50789127--50789195	29	2.4	29	80	0	84	40	18	15	24	1.90
50789157--50789309	28	5.4	28	75	6	130	35	19	16	28	1.93
50789157--50789310	57	2.7	55	76	7	157	35	20	16	27	1.94
50794819--50794878	24	2.5	25	76	15	63	18	31	16	33	1.93
50810383--50810424	4	10.5	4	100	0	84	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50814685--50814737	24	2.2	24	82	0	61	50	9	5	33	1.58
50814890--50814942	27	2.0	27	96	0	97	39	7	11	41	1.69
50818127--50818168	17	2.3	18	80	12	50	33	0	9	57	1.31
50818581--50818621	18	2.3	18	84	12	50	24	0	2	73	0.96
50824827--50824867	18	2.3	18	84	12	50	24	0	2	73	0.96
50833708--50833747	18	2.2	18	95	0	71	42	5	7	45	1.54
50834237--50834273	16	2.3	16	100	0	74	37	10	18	32	1.86
50836399--50836430	16	2.0	16	100	0	64	0	6	31	62	1.20
50837115--50837147	16	2.1	16	94	0	57	21	21	21	36	1.95
50843925--50843950	7	3.7	7	100	0	52	46	0	0	53	1.00
50844199--50844278	23	3.7	21	67	21	58	53	1	6	38	1.34
50844188--50844278	42	2.2	41	81	11	107	51	1	6	40	1.35
50844928--50844962	16	2.1	17	89	5	54	51	0	0	48	1.00
50847747--50847857	47	2.4	47	92	0	168	21	24	20	33	1.97
50853356--50853494	42	3.3	41	85	2	152	21	23	36	18	1.95
50854515--50854562	20	2.4	20	85	0	60	4	22	16	56	1.58
50855346--50855403	22	2.7	21	86	5	80	39	1	5	53	1.33
50856771--50856867	49	2.0	49	100	0	194	43	4	15	37	1.66
50856778--50856881	49	2.1	49	89	3	156	46	4	13	35	1.65
50858010--50858081	4	18.0	4	100	0	144	50	25	0	25	1.50
50859315--50859357	15	2.8	15	75	3	50	55	0	11	32	1.36
50862575--50862627	20	2.7	18	80	16	52	39	1	13	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50863537--50863573	14	2.9	13	85	14	51	72	0	27	0	0.84
50863537--50863574	13	2.9	14	88	11	55	73	0	26	0	0.83
50875264--50875326	30	2.1	30	90	0	99	57	15	3	23	1.53
50876057--50876108	24	2.2	24	85	0	68	50	7	3	38	1.50
50880227--50880302	24	3.2	24	90	0	116	50	9	5	35	1.57
50885028--50885073	7	6.4	7	87	12	67	2	56	0	41	1.11
50886317--50886346	4	7.5	4	92	0	51	20	0	3	76	0.92
50895766--50895805	20	2.0	20	85	5	53	12	15	20	52	1.74
50895795--50895856	30	2.1	30	96	0	115	30	11	16	41	1.83
50908231--50908322	29	3.2	29	90	3	123	21	23	27	27	1.99
50908273--50908325	17	3.4	17	70	24	62	18	26	32	22	1.97
50908273--50908334	29	2.1	29	87	0	88	20	30	27	20	1.98
50911810--50911852	11	3.9	11	82	8	52	76	2	18	2	1.00
50911949--50911987	15	2.6	15	88	8	53	74	2	2	20	1.06
50911949--50911996	18	2.6	18	86	3	69	72	4	2	20	1.11
50915741--50915891	75	2.0	75	98	0	293	27	13	23	34	1.93
50916513--50916559	23	2.0	24	83	4	60	21	21	19	38	1.94
50920211--50920266	27	2.1	27	93	0	94	35	14	19	30	1.91
50920464--50920519	27	2.1	27	89	0	85	33	14	21	30	1.93
50920124--50920632	253	2.0	252	95	0	919	35	13	18	32	1.90
50922323--50922365	20	2.2	20	87	4	61	58	9	6	25	1.54
50934114--50934153	18	2.2	18	100	0	80	22	15	5	57	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50935363--50935402	20	2.0	20	90	9	64	27	0	12	60	1.33
50939994--50940027	18	1.9	18	88	5	52	35	2	2	58	1.28
50943251--50943277	7	3.9	7	100	0	54	29	14	0	55	1.40
50944571--50944629	21	2.7	22	76	5	66	69	3	3	23	1.19
50944576--50944631	29	1.9	29	89	7	87	67	3	1	26	1.16
50946969--50947035	34	1.9	35	84	3	91	44	11	8	34	1.73
50964926--50964989	28	2.3	28	91	0	101	43	4	0	51	1.22
50964993--50965030	19	1.9	19	94	5	67	73	15	5	5	1.19
50965659--50965730	19	3.2	23	65	31	64	41	15	0	43	1.46
50965644--50965732	45	2.0	45	100	0	178	40	15	0	43	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218