genome.fa.s23.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  115  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33839372--33839443	37	1.9	38	83	8	94	33	1	2	62	1.18
33840723--33841051	50	6.5	50	79	4	322	27	22	27	22	1.99
33840723--33841051	100	3.2	100	86	5	439	27	22	27	22	1.99
33840770--33841103	50	6.7	49	78	7	300	29	22	26	21	1.99
33843821--33843899	25	3.3	25	61	10	65	32	5	29	32	1.79
33843808--33844077	47	5.7	47	97	1	495	31	9	30	29	1.88
33844194--33844271	37	2.1	37	88	2	113	24	17	32	25	1.97
33845764--33845839	31	2.5	31	82	4	100	44	13	15	26	1.83
33848144--33848199	7	7.5	8	72	20	50	44	0	25	30	1.54
33851645--33851819	96	1.8	96	83	4	237	32	12	20	35	1.89
33860437--33860494	30	1.9	30	93	6	100	27	20	20	31	1.98
33862706--33862769	32	2.0	32	93	0	110	35	17	7	39	1.78
33866458--33866819	180	2.0	180	97	0	679	40	16	12	31	1.85
33868442--33868481	21	2.0	20	85	5	53	55	7	2	35	1.42
33868464--33868502	19	2.0	20	85	5	53	51	7	0	41	1.31
33868485--33868539	18	3.0	19	76	7	51	50	3	0	45	1.19
33875882--33876039	35	4.5	35	89	0	226	23	21	27	27	1.99
33881414--33881541	29	4.4	29	92	2	195	36	10	26	25	1.89
33881523--33881686	29	5.6	29	74	7	143	37	12	27	22	1.90
33881521--33881684	87	1.9	87	83	5	215	37	12	26	23	1.91
33884803--33884848	21	2.2	21	84	0	56	15	36	23	23	1.93
33885658--33885730	13	5.5	13	76	9	76	34	17	1	46	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33885658--33885741	40	2.0	42	84	8	111	34	16	1	47	1.55
33885661--33885730	27	2.6	28	82	10	85	35	17	1	45	1.57
33898920--33899181	138	1.9	138	79	6	298	32	25	20	22	1.98
33905919--33905961	21	2.0	21	82	8	52	58	2	23	16	1.50
33907858--33907893	19	1.9	18	88	5	54	58	0	11	30	1.33
33928965--33929179	106	2.0	106	94	0	378	39	12	13	35	1.82
33929107--33929137	11	2.8	11	95	0	53	32	16	6	45	1.72
33929646--33929680	17	2.0	17	88	5	52	20	5	0	74	1.02
33930774--33930809	15	2.5	14	86	8	54	5	13	0	80	0.88
33933002--33933168	87	1.9	86	84	3	219	37	25	13	24	1.91
33953230--33953257	14	2.0	14	100	0	56	35	7	0	57	1.26
33953270--33953300	13	2.4	13	94	0	53	51	0	3	45	1.17
33956890--33956947	28	2.1	28	83	3	73	32	15	18	32	1.93
33959211--33959268	28	2.0	28	80	9	64	18	12	12	56	1.65
33959955--33959979	12	2.1	12	100	0	50	48	0	8	44	1.32
33963714--33963821	15	7.2	15	67	12	78	44	7	22	25	1.79
33963710--33963830	30	4.0	30	94	2	190	44	6	23	25	1.77
33966646--33966728	26	3.2	25	67	13	69	38	6	1	54	1.33
33966615--33966748	52	2.7	49	85	10	191	42	6	0	50	1.34
33966696--33966870	94	1.9	94	92	0	296	40	7	5	47	1.54
33970377--33970493	50	2.3	52	79	7	132	39	11	14	34	1.83
33978397--33978449	27	2.0	27	82	10	65	43	16	1	37	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33982286--33982384	30	3.3	30	78	0	90	18	31	27	23	1.97
33984872--33984913	22	1.9	22	95	0	75	45	0	9	45	1.36
33984894--33985138	69	3.5	69	82	8	282	41	4	17	36	1.70
33985011--33985157	76	1.9	75	84	4	197	39	6	14	39	1.72
33985312--33985368	29	2.0	29	89	0	87	49	3	10	36	1.55
33987436--33987568	61	2.2	59	84	9	171	37	12	28	21	1.89
34003632--34003816	101	1.8	102	85	3	266	23	17	27	31	1.97
34003738--34003818	26	3.2	26	67	28	73	20	14	29	34	1.93
34003624--34003818	51	3.9	51	79	6	202	23	16	28	31	1.96
34004042--34004073	16	2.0	16	93	0	55	59	0	15	25	1.36
34009730--34009924	51	3.8	52	78	3	200	24	18	27	29	1.98
34009736--34009924	102	1.9	101	86	3	272	24	17	26	30	1.98
34012731--34012770	20	2.1	19	90	4	62	22	0	2	75	0.93
34013709--34013805	48	2.0	48	100	0	194	29	16	16	37	1.91
34020596--34020719	62	2.0	61	88	1	185	37	20	17	25	1.94
34027559--34027668	32	3.4	32	83	0	139	18	39	22	20	1.93
34028487--34028591	52	2.0	52	100	0	210	43	22	7	25	1.80
34028684--34028980	151	2.0	152	81	8	356	41	4	9	44	1.58
34029462--34029508	24	1.9	24	83	12	60	31	6	6	55	1.51
34040876--34041064	42	4.5	42	80	5	206	19	16	26	37	1.93
34040876--34041040	86	1.9	84	83	2	213	18	17	24	39	1.92
34041622--34041656	18	1.9	18	88	0	52	5	14	2	77	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34041825--34041922	44	2.2	46	89	5	148	54	1	5	39	1.30
34041966--34042246	150	1.8	152	92	4	478	43	4	9	41	1.58
34042864--34042908	20	2.2	20	84	7	56	17	6	4	71	1.25
34049385--34049425	21	2.0	21	86	9	59	58	0	19	21	1.39
34049735--34049785	23	2.2	23	82	6	59	15	19	11	52	1.73
34049828--34049866	17	2.2	18	90	4	62	51	5	10	33	1.58
34058121--34058167	21	2.2	20	82	14	58	80	4	8	6	1.00
34061218--34061281	32	2.0	32	90	0	101	37	18	9	34	1.83
34065405--34066236	277	3.0	277	92	0	1353	29	18	20	32	1.96
34072563--34072627	33	2.0	33	87	6	96	27	24	26	21	1.99
34081255--34081288	17	2.0	18	88	11	54	29	20	5	44	1.75
34088214--34088395	39	4.6	39	79	8	190	24	28	21	25	1.99
34096604--34096628	13	1.9	13	100	0	50	56	4	0	40	1.18
34099557--34099623	27	2.5	27	82	4	82	20	28	14	35	1.93
34099709--34099919	45	4.7	44	81	5	190	27	22	13	36	1.92
34099751--34099919	90	1.9	89	86	3	241	28	22	12	36	1.91
34099751--34099920	45	3.8	44	85	4	207	28	22	12	35	1.91
34107991--34108050	10	6.3	9	75	21	52	45	3	0	51	1.17
34108987--34109037	25	2.0	25	84	3	66	49	13	0	37	1.43
34109278--34109338	30	2.1	30	84	9	81	32	3	8	55	1.45
34110511--34110743	43	5.4	43	85	3	272	31	27	15	24	1.96
34110511--34110750	87	2.8	87	80	5	272	30	27	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34111785--34112196	193	2.1	192	80	8	469	42	18	9	29	1.82
34114299--34114399	7	14.1	7	70	15	55	41	36	0	20	1.59
34114302--34114399	21	4.6	21	76	3	81	41	36	1	20	1.59
34114364--34114405	15	2.9	15	89	3	59	45	33	0	21	1.52
34114430--34114468	14	2.8	14	84	0	51	51	30	2	15	1.57
34114611--34114643	14	2.4	14	90	10	50	27	45	3	24	1.68
34114634--34114701	21	3.2	22	78	12	70	35	42	2	19	1.66
34114660--34114698	21	1.9	21	94	5	71	30	46	2	20	1.64
34115058--34115250	41	4.7	41	89	1	264	30	29	19	20	1.97
34115058--34115293	82	2.9	82	85	1	269	28	28	19	22	1.98
34121209--34121476	104	2.6	105	93	1	450	29	30	20	18	1.97
34121804--34121867	30	2.2	29	81	10	76	29	28	6	35	1.82
34121811--34121867	30	1.9	30	85	3	80	29	24	7	38	1.82
34124175--34124671	40	12.4	40	78	2	469	20	27	17	33	1.96
34124175--34124664	120	4.1	120	81	2	545	21	27	17	33	1.96
34134932--34135000	21	3.3	22	73	15	65	20	37	20	21	1.94
34137223--34137266	21	2.1	21	91	8	72	15	11	40	31	1.83
34139813--34139847	17	2.1	17	100	0	70	45	11	5	37	1.64
34143518--34143552	17	2.0	18	88	5	54	54	11	0	34	1.37
34150602--34150646	21	2.1	22	84	12	58	71	6	6	15	1.29
34153659--34153761	41	2.5	41	90	0	161	31	24	21	23	1.99
34155481--34155519	18	2.2	17	86	13	53	33	0	20	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34155745--34155842	23	4.3	23	90	2	162	20	21	26	31	1.98
34155747--34155835	45	2.0	45	95	0	160	19	22	26	31	1.97
34159105--34159281	34	5.1	34	78	4	176	41	14	21	22	1.89
34159117--34159281	69	2.4	69	86	2	233	41	15	21	21	1.90
34163498--34163571	37	2.0	37	97	0	139	27	22	13	36	1.92
34167485--34167536	24	2.1	25	86	10	72	1	11	3	82	0.88
34167488--34167536	19	2.6	19	78	18	57	2	12	4	81	0.91
34175843--34175885	19	2.2	19	87	4	59	55	2	0	41	1.12
34175841--34175889	16	2.8	17	82	17	57	57	2	0	40	1.10
34178500--34178557	7	8.3	7	90	0	62	17	62	0	20	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218