genome.fa.s23.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  32  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10030317--10030354	18	2.2	18	86	13	53	57	0	0	42	0.98
10044768--10044807	16	2.5	16	91	0	71	35	5	32	27	1.79
10044789--10044881	44	2.1	44	88	6	134	34	3	25	36	1.72
10044977--10045089	21	5.1	21	70	21	88	52	1	0	45	1.17
10045041--10045088	19	2.7	18	90	6	71	56	0	0	43	0.99
10045006--10045112	56	1.9	55	83	7	135	49	3	0	45	1.26
10045351--10045396	23	2.0	23	95	0	83	50	13	0	36	1.41
10046724--10046988	43	6.2	44	87	3	319	29	31	15	22	1.95
10046735--10047012	129	2.2	128	85	5	366	31	32	14	21	1.94
10046724--10047026	43	7.1	42	83	8	224	31	31	15	22	1.95
10051323--10051381	22	2.7	22	78	7	66	25	3	42	28	1.71
10052207--10052365	82	1.9	82	87	0	228	45	27	1	25	1.63
10052852--10053004	41	3.7	41	89	2	227	28	25	22	24	1.99
10053043--10053155	40	2.8	41	78	2	120	20	22	23	34	1.97
10055586--10055725	50	2.8	51	81	2	156	22	30	22	25	1.99
10058432--10058472	21	1.9	20	85	14	55	36	0	0	63	0.95
10059115--10059167	25	2.1	26	82	3	63	56	3	1	37	1.28
10059364--10059402	16	2.6	15	80	11	53	46	0	0	53	1.00
10059364--10059429	13	5.3	12	77	18	55	50	1	0	48	1.10
10066865--10066938	31	2.4	31	86	0	103	44	4	0	51	1.20
10066863--10066955	31	3.0	31	78	7	98	43	3	1	52	1.24
10069964--10069996	17	1.9	17	100	0	66	42	9	0	48	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10072033--10072058	2	13.0	2	100	0	52	50	0	50	0	1.00
10077535--10077588	3	18.3	3	84	7	67	33	1	1	62	1.16
10079469--10079521	27	2.0	27	96	3	99	66	7	0	26	1.18
10085464--10085531	28	2.3	30	77	7	77	30	13	17	38	1.88
10100188--10100213	2	13.0	2	100	0	52	50	0	50	0	1.00
10104214--10104264	26	1.9	26	84	4	66	60	1	11	25	1.41
10104765--10104812	24	2.0	24	88	4	71	6	6	16	70	1.28
10104765--10104816	21	2.4	22	84	12	63	7	5	15	71	1.29
10105922--10106118	98	2.0	99	84	3	254	29	11	16	42	1.83
10110550--10110589	15	2.7	15	92	0	62	30	7	17	45	1.76
10124603--10124730	42	3.0	42	82	6	143	17	21	16	44	1.86
10124618--10124752	42	3.2	42	81	6	114	16	22	17	44	1.86
10132208--10132321	42	2.7	42	88	5	160	17	23	17	41	1.90
10132268--10132336	21	3.3	21	79	0	75	14	23	20	42	1.89
10132208--10132342	42	3.2	42	86	4	148	17	22	17	42	1.89
10145744--10145795	25	2.1	24	82	3	59	19	3	25	51	1.63
10150499--10150581	24	3.4	24	76	6	69	33	16	27	21	1.95
10152987--10153094	20	5.4	19	69	8	81	33	18	25	23	1.97
10152992--10153178	40	4.7	40	85	2	241	34	17	25	22	1.96
10153116--10153181	20	3.3	20	72	4	62	31	19	25	22	1.98
10169936--10170014	39	2.0	39	100	0	158	35	22	7	34	1.83
10180437--10180489	18	2.9	18	80	2	61	41	45	1	11	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10180593--10180659	18	3.7	18	89	0	98	25	10	22	41	1.85
10180593--10180659	9	7.4	9	84	0	89	25	10	22	41	1.85
10181336--10181378	18	2.4	18	88	0	59	41	44	2	11	1.53
10181487--10181553	9	7.4	9	91	0	98	23	7	23	44	1.79
10182113--10182151	5	8.0	5	82	5	53	0	23	0	76	0.78
10182112--10182188	14	5.1	14	72	19	57	2	24	1	71	1.06
10186501--10186552	17	3.0	17	78	18	54	67	0	3	28	1.08
10190697--10190814	59	2.0	59	94	0	209	42	16	7	33	1.76
10202660--10202701	20	2.1	20	100	0	84	23	30	0	45	1.53
10217478--10217529	26	2.0	26	100	0	104	57	7	0	34	1.27
10217712--10217748	11	3.5	11	88	7	58	70	0	29	0	0.88
10217775--10217813	19	2.0	21	85	10	55	23	0	10	66	1.22
10217878--10217909	3	10.7	3	100	0	64	0	0	31	68	0.90
10217906--10217944	19	2.2	19	90	9	64	33	0	17	48	1.48
10218072--10218207	36	4.1	36	79	18	184	36	0	12	50	1.40
10218131--10218183	26	2.0	26	96	0	97	43	0	7	49	1.31
10218189--10218219	12	2.6	12	94	0	53	19	0	19	61	1.35
10220920--10221070	27	5.4	29	69	22	74	0	31	0	68	0.89
10220950--10221144	40	4.8	41	75	18	178	0	32	0	67	0.91
10220954--10221135	4	45.8	4	72	17	123	0	31	0	68	0.90
10220951--10221056	11	9.7	11	74	15	64	0	29	0	70	0.87
10220954--10221135	45	4.1	45	77	13	146	0	31	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10221046--10221138	18	5.1	17	68	23	55	0	35	0	64	0.94
10220963--10221138	74	2.3	74	83	10	185	0	32	0	67	0.91
10221178--10221253	27	2.8	27	85	0	107	14	26	28	30	1.95
10221300--10221370	25	2.7	27	93	6	119	47	0	9	42	1.36
10222845--10222901	19	3.2	19	82	9	66	33	0	1	64	1.04
10233265--10233290	3	8.7	3	100	0	52	69	0	30	0	0.89
10239042--10239080	14	2.9	13	88	7	60	74	0	0	25	0.82
10243123--10243165	23	2.0	21	81	9	50	37	2	2	58	1.24
10244205--10244236	13	2.4	14	94	5	57	65	6	3	25	1.31
10247607--10247652	17	2.6	17	80	19	58	50	0	0	50	1.00
10247698--10247763	30	2.2	29	86	7	89	56	9	1	33	1.40
10258124--10258166	20	2.2	20	91	0	68	34	16	6	41	1.75
10259294--10259351	9	6.4	9	91	0	89	39	22	10	27	1.86
10259350--10259424	37	2.0	37	89	0	114	44	16	5	34	1.70
10259551--10259657	39	2.8	38	92	2	178	17	1	27	53	1.54
10259648--10259685	17	2.2	18	95	4	69	15	0	42	42	1.47
10262083--10262526	46	10.6	45	79	14	424	35	14	21	28	1.93
10262119--10262391	36	7.0	36	78	15	276	36	14	20	28	1.92
10262083--10262480	82	4.9	82	85	10	528	36	14	20	28	1.92
10262201--10262437	118	2.0	118	93	0	402	35	14	20	28	1.93
10264379--10264414	16	2.2	16	100	0	72	38	5	33	22	1.77
10264394--10264490	44	2.2	44	88	5	142	30	5	29	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10264645--10264681	16	2.2	17	86	13	51	59	0	0	40	0.97
10264638--10264677	14	2.9	15	82	14	50	52	0	0	47	1.00
10264665--10264881	102	2.2	99	94	4	373	50	4	1	42	1.33
10264930--10264970	21	2.0	21	100	0	82	56	9	0	34	1.32
10269459--10269514	15	4.0	15	73	17	57	55	0	0	44	0.99
10269469--10269531	26	2.5	25	82	10	83	58	1	0	39	1.07
10269464--10269662	59	3.3	59	71	14	201	54	3	2	40	1.29
10269442--10269681	120	2.0	120	95	0	435	52	3	2	41	1.33
10281704--10281730	2	13.5	2	100	0	54	48	0	0	51	1.00
10282384--10282463	23	3.5	23	71	17	76	55	0	1	43	1.08
10282402--10282432	10	3.0	10	95	4	53	48	0	0	51	1.00
10282694--10282730	17	2.2	17	90	0	56	54	8	2	35	1.44
10294702--10294844	59	2.4	58	86	4	207	23	17	21	37	1.94
10296010--10296201	61	3.2	61	72	12	205	44	1	4	50	1.31
10296010--10296238	121	1.9	121	96	0	422	44	1	3	50	1.28
10296170--10296216	18	2.6	18	90	6	69	42	0	0	57	0.98
10296167--10296280	41	2.6	40	73	20	95	43	0	1	53	1.17
10296450--10296534	16	5.3	16	95	0	152	20	34	5	40	1.76
10298794--10299137	102	3.4	102	89	3	489	29	15	25	29	1.96
10298794--10299131	51	6.7	50	81	5	374	29	15	26	29	1.96
10299329--10299401	37	1.9	37	88	2	110	43	1	23	31	1.62
10301110--10301730	311	2.0	310	89	4	966	43	10	17	27	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10303711--10303840	55	2.5	51	84	9	179	44	13	15	26	1.84
10303724--10303834	55	2.0	55	92	0	186	42	14	16	27	1.86
10304694--10304758	16	4.1	16	91	0	103	40	4	33	21	1.74
10304738--10304834	44	2.2	44	87	5	133	31	5	28	34	1.79
10304982--10305021	14	2.9	14	82	14	55	55	0	0	45	0.99
10304989--10305025	17	2.2	17	90	4	58	62	0	0	37	0.96
10305160--10305203	22	2.0	23	86	4	63	61	2	0	36	1.09
10305009--10305227	102	2.2	102	94	0	386	51	3	1	43	1.27
10305329--10305362	17	2.0	17	88	11	52	58	0	2	38	1.13
10305111--10305417	116	2.6	118	94	3	523	51	4	1	42	1.29

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218