genome.fa.s23.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  110  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32346289--32346341	27	2.0	27	92	0	88	26	32	22	18	1.97
32346674--32346735	30	2.0	30	84	9	81	29	24	4	41	1.75
32353505--32353751	75	3.3	74	90	2	377	32	27	17	21	1.96
32354114--32354176	30	2.1	30	85	8	83	30	23	4	41	1.75
32358801--32358874	19	3.9	19	76	0	85	31	25	24	18	1.98
32358801--32358874	38	1.9	38	86	0	103	31	25	24	18	1.98
32359228--32359270	20	2.2	20	82	0	50	60	6	2	30	1.35
32359297--32359363	10	6.9	10	74	8	50	56	2	1	38	1.24
32359220--32359357	9	15.0	9	66	14	59	55	3	1	39	1.26
32362334--32362420	39	2.3	36	78	9	102	42	8	10	39	1.69
32364154--32364190	10	3.7	10	92	0	65	62	0	13	24	1.31
32364154--32364191	5	7.6	5	87	0	58	60	0	15	23	1.35
32365101--32365138	14	2.9	13	88	11	60	68	2	28	0	1.03
32370733--32370777	19	2.3	20	75	17	51	17	51	0	31	1.46
32374856--32375099	122	2.0	122	100	0	488	21	16	26	36	1.94
32378470--32378505	18	2.0	18	94	0	63	30	0	2	66	1.06
32378475--32378508	9	4.0	8	88	11	50	35	0	0	64	0.94
32379847--32380217	104	3.6	104	93	2	611	19	20	29	30	1.97
32383137--32383175	20	2.0	20	85	10	53	61	0	0	38	0.96
32386948--32387098	39	4.1	39	76	18	162	33	2	0	64	1.08
32387015--32387066	9	5.6	9	75	8	50	28	1	0	69	0.99
32387063--32387114	10	4.9	11	77	13	56	42	1	0	55	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32387006--32387115	29	3.7	31	85	8	117	38	1	0	60	1.08
32387054--32387114	32	1.9	31	93	3	104	40	1	0	57	1.08
32390350--32390396	24	2.0	24	86	0	67	34	4	10	51	1.56
32401700--32401726	6	4.5	6	100	0	54	51	0	0	48	1.00
32403411--32403453	13	3.1	14	84	12	54	60	0	0	39	0.97
32409269--32409324	26	2.2	26	87	6	78	35	17	1	44	1.60
32415922--32416056	51	2.7	51	88	1	182	24	17	27	30	1.97
32421568--32421649	39	2.1	39	97	0	155	31	14	21	31	1.94
32423605--32423735	50	2.6	51	83	1	147	23	15	28	32	1.95
32428744--32428768	12	2.1	12	100	0	50	32	8	16	44	1.76
32436928--32436990	30	2.1	29	82	11	74	20	50	0	28	1.48
32438114--32438161	24	2.0	24	95	0	87	43	20	8	27	1.80
32442121--32442171	23	2.2	24	82	3	59	49	9	27	13	1.74
32444009--32444033	12	2.1	12	100	0	50	8	24	36	32	1.84
32444105--32444780	114	6.0	114	86	5	880	25	22	24	28	1.99
32445393--32445429	7	5.6	7	84	12	51	18	0	48	32	1.49
32445398--32445445	19	2.4	20	89	6	71	22	0	45	31	1.53
32445393--32445444	26	2.0	26	85	7	70	23	0	44	32	1.54
32445533--32445562	7	4.3	7	91	0	51	16	0	56	26	1.40
32445523--32445562	14	2.9	14	84	0	53	22	0	47	30	1.52
32445543--32445800	90	3.0	86	85	10	330	28	2	26	42	1.68
32446209--32446438	84	2.7	84	82	5	243	31	16	20	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32447479--32447509	15	2.1	15	94	5	55	6	9	6	77	1.12
32447903--32447931	12	2.4	12	100	0	58	48	10	0	41	1.37
32447927--32448241	9	36.2	9	65	21	102	47	18	2	31	1.62
32447927--32448077	25	6.2	25	70	16	104	46	19	1	31	1.62
32447990--32448242	41	6.3	41	69	19	131	47	18	2	32	1.63
32448051--32448242	16	12.1	16	65	19	82	48	17	2	31	1.61
32448051--32448138	37	2.4	37	96	0	158	48	17	1	32	1.54
32448051--32448153	37	2.4	41	77	22	115	49	17	1	31	1.58
32448155--32448237	25	3.3	25	66	24	59	46	19	3	30	1.66
32450521--32450703	43	4.3	43	82	4	217	30	18	27	24	1.98
32450521--32450705	86	2.2	86	85	3	248	30	17	27	24	1.97
32450782--32450826	21	2.1	21	91	0	72	42	24	17	15	1.88
32455775--32456092	175	1.8	175	95	0	573	36	20	16	26	1.94
32457253--32457342	31	2.9	31	86	1	92	34	8	12	44	1.73
32457272--32457342	31	2.3	31	92	0	115	32	11	12	43	1.78
32467651--32467712	10	5.9	10	74	10	52	33	32	3	30	1.74
32467651--32467713	21	3.0	21	88	2	90	33	33	3	30	1.74
32474733--32474765	15	2.3	15	89	5	50	0	18	3	78	0.87
32479585--32479612	12	2.3	12	100	0	56	17	21	0	60	1.36
32495594--32495653	29	2.1	29	96	0	111	40	15	23	21	1.91
32502317--32502353	11	3.4	11	84	0	56	27	43	5	24	1.76
32507048--32507072	12	2.1	12	100	0	50	8	44	0	48	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32509923--32510017	47	2.0	47	97	0	181	42	8	24	25	1.82
32512701--32512764	32	2.0	32	96	0	119	32	12	23	31	1.92
32514955--32515008	20	2.7	20	82	0	72	20	29	22	27	1.98
32517289--32517441	6	25.2	6	73	7	67	29	5	8	56	1.51
32517289--32517383	12	8.3	12	81	9	92	31	3	9	55	1.47
32517297--32517380	18	4.8	18	84	5	93	30	3	10	54	1.52
32518615--32518701	45	1.9	45	92	0	147	18	34	22	24	1.96
32529479--32529516	15	2.7	14	84	8	51	42	2	0	55	1.14
32530096--32530145	20	2.5	19	81	15	57	14	24	20	42	1.88
32535081--32535137	22	2.5	24	83	11	66	61	5	1	31	1.28
32545675--32545716	16	2.6	16	96	0	75	11	26	0	61	1.30
32545687--32545740	20	2.7	20	83	11	65	14	24	3	57	1.54
32546008--32546140	50	2.7	50	82	2	142	21	30	21	27	1.98
32553564--32553633	26	2.6	27	84	4	97	47	14	17	21	1.82
32553564--32553654	27	3.4	27	80	11	98	45	16	16	21	1.86
32553887--32553926	21	1.9	21	84	0	53	10	0	50	40	1.36
32565730--32565793	33	1.9	33	83	0	83	31	23	20	25	1.98
32565897--32565969	26	2.8	26	83	4	85	34	23	20	21	1.97
32569382--32569544	80	2.0	81	97	2	310	38	13	20	28	1.90
32582827--32582856	10	2.9	10	95	5	51	50	0	13	36	1.42
32585349--32585475	27	4.7	27	81	6	132	26	14	28	30	1.95
32585349--32585464	54	2.1	55	84	6	148	29	12	28	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32591355--32591387	17	1.9	17	93	0	57	30	18	27	24	1.98
32597127--32597303	45	4.0	45	83	4	198	20	16	27	35	1.94
32614565--32614602	17	2.2	17	100	0	76	26	18	21	34	1.96
32614565--32614609	17	2.6	17	92	0	63	28	17	20	33	1.95
32621527--32621564	10	3.5	11	86	13	53	34	0	2	63	1.09
32631768--32631818	25	2.0	25	100	0	102	31	27	7	33	1.85
32633043--32633098	17	3.5	16	79	16	62	16	7	3	73	1.20
32633048--32633077	14	2.1	15	93	6	53	13	6	3	76	1.11
32636528--32636558	7	4.6	7	96	4	55	25	0	0	74	0.82
32637310--32637352	17	2.5	17	82	10	52	44	0	4	51	1.22
32637324--32637383	19	3.2	18	90	6	86	36	0	1	61	1.06
32637322--32637384	9	6.9	9	75	8	56	38	0	1	60	1.07
32646230--32646428	20	9.9	21	70	17	109	42	20	25	12	1.86
32646251--32646362	40	2.8	40	82	1	145	40	24	25	10	1.87
32649213--32649259	23	2.0	23	100	0	94	42	23	12	21	1.87
32657246--32657348	42	2.5	42	85	6	120	16	21	17	44	1.86
32657291--32657348	21	2.8	21	72	0	71	15	24	18	41	1.89
32659127--32659159	17	1.9	17	93	0	57	18	9	12	60	1.57
32659129--32659173	16	2.8	16	82	3	54	20	8	15	55	1.66
32660753--32660785	16	2.1	16	94	0	57	45	0	0	54	0.99
32671823--32671851	14	2.0	15	93	6	51	27	0	20	51	1.47
32672991--32673120	43	3.0	43	81	10	158	21	18	29	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32678145--32678180	12	3.3	11	88	11	56	33	0	0	66	0.92
32686133--32686227	25	3.8	25	88	1	129	31	21	22	25	1.98
32705225--32705255	16	1.9	16	93	0	53	70	9	9	9	1.33
32711937--32712029	19	5.1	19	70	12	77	30	10	11	47	1.74
32711918--32712038	54	2.2	54	95	0	215	31	10	14	42	1.80
32712673--32714704	861	2.4	850	90	3	3157	30	18	16	34	1.94
32720342--32720373	17	1.9	17	93	6	57	75	3	6	15	1.14
32721457--32721499	19	2.1	21	83	8	54	58	9	9	23	1.58
32724378--32724422	23	2.0	23	86	4	65	17	20	20	42	1.90
32727076--32727142	29	2.2	30	82	10	75	46	1	19	32	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218