genome.fa.s23.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  147  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44741530--44741620	45	2.0	44	85	2	119	32	5	27	34	1.80
44751657--44751707	25	2.0	25	88	7	77	62	1	3	31	1.24
44752407--44752438	8	4.1	8	92	8	57	25	0	0	75	0.81
44752408--44752438	15	2.1	15	100	0	62	25	0	0	74	0.82
44752411--44752447	15	2.5	15	90	0	56	32	0	0	67	0.91
44758553--44758578	13	2.0	13	100	0	52	46	23	7	23	1.78
44760796--44760824	3	9.7	3	100	0	58	34	0	0	65	0.93
44765016--44765057	20	2.1	20	86	0	57	47	0	7	45	1.30
44777859--44777915	21	2.7	21	91	0	96	40	10	12	36	1.77
44782605--44782650	24	1.9	24	86	0	65	45	17	26	10	1.81
44786398--44786724	44	7.4	44	63	13	134	32	18	22	26	1.97
44786408--44786988	44	13.2	44	61	15	126	31	19	23	25	1.98
44786358--44787037	132	5.2	132	94	0	1101	31	20	23	25	1.98
44787070--44787210	40	3.4	40	69	11	122	29	20	19	30	1.97
44787106--44787704	44	13.9	42	69	14	244	28	20	23	28	1.99
44787070--44787254	84	2.2	84	96	1	336	29	20	21	29	1.98
44787152--44787702	217	2.5	217	90	0	870	27	20	23	29	1.99
44788049--44788105	21	2.7	21	91	0	96	43	8	10	36	1.70
44788512--44788540	15	1.9	15	100	0	58	27	0	6	65	1.18
44792015--44792127	49	2.3	49	82	1	127	24	19	23	31	1.98
44803359--44803394	18	2.0	18	94	0	63	77	0	8	13	0.98
44808589--44808626	20	1.9	20	89	10	60	23	0	7	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44814259--44814305	23	2.1	22	88	11	69	36	2	0	61	1.08
44814720--44814759	21	1.9	21	84	0	53	45	30	0	25	1.54
44814780--44814816	15	2.5	15	86	4	58	48	24	0	27	1.51
44814832--44814885	14	3.9	14	85	0	72	46	27	0	25	1.53
44815201--44815369	40	4.3	40	83	5	202	27	23	20	28	1.98
44815201--44815547	79	4.5	79	69	8	228	27	21	20	30	1.98
44815426--44815547	40	3.1	40	86	2	174	25	21	22	30	1.99
44816493--44816529	19	1.9	19	94	0	65	32	27	13	27	1.94
44820538--44820568	13	2.4	13	94	0	53	74	16	9	0	1.07
44820547--44820606	19	3.2	19	67	9	59	75	13	10	1	1.13
44820527--44820606	38	2.1	38	88	9	117	73	13	11	1	1.15
44826222--44826753	108	4.9	109	90	4	808	33	19	17	29	1.95
44826244--44826753	217	2.4	217	94	0	896	33	20	17	29	1.95
44826920--44826964	18	2.4	18	85	7	54	71	2	2	24	1.09
44827174--44827232	3	18.7	3	83	10	73	59	0	3	37	1.14
44829174--44829927	44	17.7	44	69	17	312	27	22	19	30	1.97
44828948--44829975	170	6.0	170	91	1	1594	28	21	18	31	1.97
44828996--44829969	44	22.8	44	67	16	245	28	22	18	30	1.97
44828948--44829975	510	2.0	512	94	1	1783	28	21	18	31	1.97
44841605--44842337	108	6.8	108	89	4	1109	33	18	17	30	1.94
44841605--44842331	217	3.4	217	95	0	1267	33	18	17	30	1.94
44842497--44842541	18	2.4	18	85	7	54	71	2	2	24	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44844279--44844340	31	2.0	31	96	0	115	32	9	14	43	1.78
44844641--44844666	3	8.7	3	100	0	52	30	0	0	69	0.89
44846631--44846672	10	3.8	11	81	6	50	40	0	0	59	0.97
44849086--44849337	124	2.0	125	86	2	355	32	20	15	30	1.94
44852080--44852589	256	2.0	255	95	0	921	31	9	17	41	1.82
44853791--44853854	13	5.0	13	80	1	67	35	18	3	42	1.66
44853793--44853877	26	3.3	26	76	0	80	32	18	2	45	1.62
44853792--44853877	13	6.7	12	76	9	55	32	18	2	46	1.62
44854040--44854101	25	2.5	25	72	0	61	30	24	14	30	1.95
44855434--44855465	13	2.4	14	89	10	57	59	0	0	40	0.97
44862587--44862634	25	1.9	25	86	0	69	35	16	14	33	1.89
44877859--44878941	547	2.0	548	89	1	1670	26	15	24	33	1.95
44884524--44884720	43	4.6	43	80	3	184	35	24	14	25	1.93
44887874--44887920	19	2.5	19	92	0	85	38	8	10	42	1.70
44889295--44889353	29	2.0	29	96	0	109	27	13	27	32	1.94
44889963--44890069	7	15.4	7	71	14	62	40	41	0	18	1.51
44890013--44890069	28	2.0	29	86	10	82	38	43	0	17	1.49
44890020--44890209	89	2.1	89	85	6	233	45	32	0	22	1.53
44890045--44890209	89	1.9	89	88	2	251	45	30	0	24	1.53
44890668--44890713	20	2.4	19	85	7	58	65	4	4	26	1.30
44890724--44890995	41	6.6	41	86	3	325	32	23	19	24	1.98
44892151--44892220	25	3.0	23	73	20	65	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44892181--44892219	15	2.6	15	88	11	62	46	0	0	53	1.00
44892389--44892427	21	1.9	21	94	5	71	30	25	10	33	1.89
44894939--44894963	12	2.1	12	100	0	50	44	0	8	48	1.32
44900389--44900428	5	8.4	5	83	10	57	60	0	2	37	1.11
44900391--44900433	15	3.1	14	83	12	54	60	0	2	37	1.10
44909082--44909353	43	6.3	43	76	7	214	30	20	20	27	1.98
44909785--44909824	21	1.9	21	94	0	71	2	47	17	32	1.61
44915265--44915572	9	37.0	9	69	16	193	31	1	20	46	1.62
44915302--44915593	25	12.2	24	72	16	166	31	1	19	47	1.60
44915287--44915446	34	4.9	34	74	12	111	30	1	20	48	1.57
44915270--44915560	118	2.5	118	92	2	475	30	2	20	46	1.62
44915647--44915965	121	2.6	121	96	1	577	45	5	8	40	1.59
44915962--44916070	23	5.3	23	69	26	75	46	0	8	44	1.33
44915995--44916083	18	4.8	18	79	14	101	41	0	12	46	1.41
44915988--44916065	39	2.0	41	92	5	133	43	0	11	44	1.40
44915992--44916175	39	4.8	37	75	13	131	41	2	11	44	1.53
44916124--44916188	13	4.9	13	75	17	71	43	1	9	46	1.45
44916107--44916187	40	2.0	40	92	0	135	41	2	11	44	1.53
44917036--44917065	13	2.3	13	94	0	51	50	10	0	40	1.36
44919812--44919860	15	3.2	15	88	5	80	32	38	2	26	1.68
44919849--44919976	7	17.7	7	76	6	85	34	43	0	21	1.53
44919851--44919926	22	3.5	22	86	12	104	35	42	0	22	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44919855--44919997	51	2.8	51	89	1	180	34	42	0	22	1.54
44919873--44919979	22	4.9	22	77	10	78	35	42	0	21	1.53
44919883--44919969	22	4.0	22	75	10	79	34	41	0	24	1.55
44919946--44919994	22	2.2	22	85	7	64	34	44	0	20	1.52
44921167--44921234	15	4.9	14	71	16	52	41	35	0	23	1.55
44921170--44921207	15	2.5	15	86	0	58	36	42	0	21	1.53
44921736--44921914	41	4.4	41	83	4	200	36	21	23	17	1.94
44921758--44921929	82	2.1	82	91	0	272	34	22	24	18	1.96
44922747--44922791	23	2.0	23	82	8	56	33	4	11	51	1.58
44923372--44923550	42	4.3	42	89	0	270	31	20	20	27	1.97
44929032--44929066	13	2.7	13	100	0	70	48	0	5	45	1.26
44930363--44930588	42	5.4	42	86	4	289	30	19	22	26	1.98
44931670--44931767	40	2.5	41	73	9	96	20	27	20	31	1.97
44934310--44935074	382	2.0	382	98	0	1494	27	17	9	44	1.81
44939668--44939707	20	2.0	20	85	9	55	47	12	0	40	1.41
44940126--44940163	18	2.1	18	90	9	60	34	13	7	44	1.72
44953522--44953573	21	2.4	21	80	3	59	17	25	40	17	1.90
44960919--44961027	55	2.0	55	94	0	191	40	11	17	30	1.86
44967350--44967476	55	2.3	55	93	0	209	25	20	29	23	1.99
44970564--44970657	20	4.9	19	72	16	86	37	14	12	35	1.85
44970564--44970676	57	2.0	55	93	3	190	37	15	12	34	1.86
44970564--44970656	37	2.4	37	72	15	91	37	15	12	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44970564--44970684	55	2.2	57	89	5	176	37	16	12	33	1.86
44971755--44971842	44	2.0	44	88	4	133	29	32	7	29	1.86
44979571--44979623	23	2.3	23	96	0	97	41	20	9	28	1.83
44989233--44989574	44	7.8	44	91	0	531	29	19	27	23	1.98
45000733--45000763	16	1.9	16	93	0	53	35	6	9	48	1.62
45000797--45000844	24	2.0	24	87	0	69	31	4	4	60	1.35
45018949--45018999	15	3.3	15	79	12	59	62	5	29	1	1.29
45020797--45020893	34	2.8	34	92	4	149	46	6	20	26	1.74
45028421--45028478	12	4.7	12	75	14	55	65	15	1	17	1.36
45028414--45028445	16	2.0	16	100	0	64	68	18	0	12	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218