genome.fa.s23.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  153  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46503606--46503746	73	1.9	74	94	2	248	17	19	23	39	1.92
46503799--46503842	22	2.0	22	90	0	70	45	27	18	9	1.79
46503940--46503970	12	2.5	13	89	10	55	48	0	0	51	1.00
46507409--46507486	27	2.9	27	98	1	149	11	38	26	23	1.89
46511638--46511671	17	2.0	17	100	0	68	35	5	23	35	1.79
46514420--46514446	2	13.5	2	100	0	54	51	0	0	48	1.00
46516128--46516180	23	2.3	23	84	12	74	71	0	0	28	0.86
46516159--46516213	28	1.9	29	85	10	78	58	0	0	41	0.98
46523249--46523277	12	2.3	13	94	5	51	75	0	0	24	0.80
46524621--46524672	23	2.3	22	75	21	54	9	23	1	65	1.32
46524630--46524684	12	4.6	12	73	15	51	12	23	0	63	1.29
46524666--46524703	17	2.2	18	85	4	51	10	23	2	63	1.39
46528292--46528320	14	2.0	15	93	6	51	51	0	0	48	1.00
46528314--46528411	23	4.2	23	69	17	76	51	1	1	46	1.14
46528314--46528408	24	4.0	24	71	14	81	51	1	1	46	1.15
46528462--46528521	29	2.1	29	100	0	120	45	20	0	35	1.51
46538550--46538593	13	3.3	14	84	9	56	50	0	0	50	1.00
46538552--46538591	14	2.8	16	78	21	52	47	0	0	52	1.00
46538596--46538657	20	3.2	20	72	21	60	53	1	0	45	1.10
46551235--46551277	21	2.0	21	82	8	52	11	11	32	44	1.77
46552582--46552615	16	2.1	17	88	5	52	76	11	0	11	1.02
46554068--46554142	22	3.2	24	72	12	68	76	2	1	20	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46554068--46554178	23	4.9	22	68	17	66	75	3	0	19	1.00
46554111--46554177	16	3.7	17	74	25	66	79	2	0	17	0.86
46554110--46554178	10	6.4	10	69	21	50	79	2	0	17	0.85
46554068--46554178	46	2.4	45	83	8	145	75	3	0	19	1.00
46554568--46554618	20	2.5	21	87	9	70	29	23	15	31	1.95
46554896--46554944	20	2.5	20	96	0	89	57	22	4	16	1.56
46555421--46555463	22	2.0	22	85	0	59	37	18	25	18	1.94
46557325--46557371	23	2.1	22	92	4	76	76	0	21	2	0.89
46561143--46561391	113	2.2	113	96	0	453	31	16	18	33	1.93
46561342--46561391	21	2.4	21	80	6	57	32	22	16	30	1.95
46567624--46567810	84	2.2	83	91	0	293	30	13	13	42	1.83
46572920--46573008	44	2.0	44	100	0	178	51	11	8	28	1.67
46577318--46577371	18	3.1	17	81	7	63	35	18	1	44	1.61
46578588--46578623	18	2.1	17	94	5	63	41	0	22	36	1.54
46579242--46579367	33	3.8	32	71	8	101	31	18	26	23	1.97
46582915--46582989	39	1.9	39	88	0	114	28	4	20	48	1.67
46582924--46583009	39	2.2	39	83	4	102	27	4	20	46	1.71
46588793--46588887	50	1.9	50	85	8	131	31	24	14	29	1.95
46588830--46589015	25	7.4	25	68	10	101	32	19	13	33	1.92
46588823--46588977	76	2.0	76	86	0	211	30	19	13	36	1.90
46590300--46590331	16	2.0	16	93	0	55	18	21	15	43	1.87
46596184--46596329	68	2.1	68	82	7	172	27	21	14	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46609377--46609430	28	1.9	28	96	0	99	31	25	25	16	1.97
46609372--46609437	28	2.4	27	85	7	96	31	24	24	19	1.98
46609647--46609805	64	2.5	64	83	2	176	36	22	22	18	1.95
46609642--46609808	32	5.2	32	78	1	138	35	20	23	20	1.96
46610203--46610460	81	3.2	78	81	7	279	27	14	16	41	1.87
46610203--46610485	27	10.6	27	80	5	238	27	15	16	40	1.89
46613940--46613970	16	1.9	16	93	0	53	32	25	16	25	1.96
46614989--46615042	28	1.9	28	88	0	81	29	24	27	18	1.98
46614984--46615049	28	2.4	27	80	7	78	30	22	25	21	1.99
46615246--46615343	32	3.1	32	81	0	124	36	20	21	21	1.95
46615358--46615421	27	2.4	27	85	12	80	31	23	25	20	1.98
46615486--46615544	24	2.5	23	83	8	82	45	23	8	22	1.79
46615584--46615815	27	8.6	27	84	0	284	25	19	18	36	1.95
46615583--46615815	54	4.3	54	88	0	313	24	20	18	36	1.95
46616781--46616914	32	4.2	32	77	3	135	35	24	23	16	1.95
46616781--46616914	64	2.1	64	84	0	187	35	24	23	16	1.95
46616781--46616946	64	2.6	64	78	5	149	36	23	22	17	1.95
46617656--46617695	21	1.9	21	84	0	53	40	17	2	40	1.63
46629889--46630027	63	2.2	63	87	2	199	20	27	23	28	1.99
46642249--46642306	21	2.7	21	78	10	73	39	8	31	20	1.83
46643838--46643862	7	3.6	7	100	0	50	44	0	0	56	0.99
46647736--46647810	37	2.1	36	87	2	105	34	14	10	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46652530--46652558	7	4.1	7	100	0	58	0	13	31	55	1.39
46670785--46670809	11	2.3	11	100	0	50	84	0	8	8	0.79
46672728--46672758	16	1.9	16	93	0	53	51	0	0	48	1.00
46674456--46674492	9	4.1	9	89	0	56	13	40	10	35	1.80
46676185--46676277	3	31.0	3	82	0	105	35	7	0	56	1.27
46678671--46678716	17	2.7	17	82	0	56	39	0	0	60	0.97
46681807--46681877	36	1.9	37	94	2	126	54	26	4	14	1.57
46683251--46683283	16	2.1	16	100	0	66	36	6	33	24	1.80
46684585--46684643	11	5.2	11	82	13	75	35	1	1	61	1.16
46684588--46684649	3	21.3	3	76	12	58	33	3	1	61	1.22
46684588--46684633	14	3.4	14	79	8	51	34	2	2	60	1.21
46687677--46687727	22	2.3	23	83	12	63	60	3	25	9	1.45
46692166--46692240	26	3.1	24	81	12	73	21	16	2	60	1.48
46692187--46692240	24	2.3	23	81	12	65	24	14	0	61	1.34
46696966--46697302	89	3.8	88	78	2	325	28	21	24	24	1.99
46697608--46697876	124	2.1	126	91	2	434	29	21	20	27	1.98
46697611--46697875	40	6.3	42	68	18	146	29	22	21	27	1.99
46699127--46699191	22	2.9	22	84	9	69	27	3	6	63	1.33
46699143--46699212	22	3.1	23	77	8	63	30	2	5	61	1.34
46699674--46699704	14	2.2	14	94	0	53	35	3	0	61	1.12
46701242--46701278	19	1.9	19	88	0	56	59	0	0	40	0.97
46701246--46701280	16	2.2	16	89	0	52	57	0	0	42	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46709849--46709895	8	6.2	8	85	9	64	76	0	10	12	1.02
46709829--46709893	21	3.2	20	80	10	60	70	0	12	16	1.16
46709856--46709902	21	2.2	22	92	3	78	74	0	12	12	1.07
46709849--46709903	8	7.4	7	84	12	58	74	0	12	12	1.07
46709828--46709903	29	2.7	29	84	10	86	71	0	13	15	1.16
46711106--46711201	48	2.0	48	93	4	167	35	15	18	30	1.92
46711201--46711956	89	8.5	89	85	2	966	28	24	23	23	1.99
46712156--46712410	100	2.6	100	79	6	267	32	17	21	28	1.96
46712184--46712339	50	3.1	50	69	0	132	32	19	17	29	1.95
46712418--46712759	44	7.8	45	75	7	226	29	21	23	26	1.99
46714105--46714163	3	20.3	3	79	6	68	35	1	1	61	1.16
46714106--46714167	31	2.0	31	90	0	97	37	1	1	59	1.17
46716497--46716559	27	2.4	27	97	2	119	41	9	0	49	1.35
46716600--46716651	27	1.9	27	96	0	95	30	23	32	13	1.93
46717290--46717348	19	3.2	19	80	4	84	38	11	0	49	1.40
46717381--46717439	19	3.2	19	80	4	84	49	0	11	38	1.40
46717992--46718043	27	1.9	27	92	0	86	13	30	23	32	1.93
46717994--46718052	27	2.2	27	84	0	73	13	27	27	32	1.94
46718084--46718146	28	2.2	28	97	0	117	50	0	7	41	1.31
46719057--46719163	54	2.0	54	87	3	153	16	33	23	26	1.96
46719057--46719180	54	2.3	54	83	2	142	16	33	24	25	1.96
46719793--46719834	22	2.0	21	90	9	68	42	14	16	26	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46722998--46723061	18	3.4	18	80	20	62	7	3	10	78	1.07
46726395--46726424	14	2.1	14	93	0	51	13	6	3	76	1.11
46727551--46727588	13	2.9	13	92	0	58	65	0	7	26	1.19
46733841--46733871	11	2.8	11	90	0	53	35	6	19	38	1.77
46738577--46738605	2	15.0	2	92	7	51	51	0	0	48	1.00
46742764--46742800	19	1.9	19	94	0	65	62	0	0	37	0.96
46745277--46745337	23	2.5	24	82	15	72	32	14	26	26	1.95
46748923--46749014	34	2.7	34	80	6	96	32	4	16	46	1.66
46749936--46749969	17	1.9	17	88	5	50	47	0	0	52	1.00
46754388--46754518	39	3.4	39	86	0	190	29	16	34	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218