genome.fa.s23.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  135  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41141860--41141940	42	1.9	42	100	0	162	16	16	32	35	1.90
41148747--41148836	29	3.0	30	80	9	87	33	12	16	37	1.86
41148763--41148836	30	2.5	31	80	6	89	33	10	16	39	1.83
41170036--41170096	28	2.2	29	85	11	83	49	1	4	44	1.33
41178805--41178892	40	2.2	40	100	0	176	26	12	31	29	1.93
41180958--41180992	14	2.6	13	86	8	52	25	2	14	57	1.51
41180961--41180991	14	2.2	14	94	0	53	22	3	12	61	1.46
41192809--41192833	13	1.9	13	100	0	50	32	16	16	36	1.90
41194093--41194762	47	14.3	47	91	3	1055	33	8	29	28	1.87
41204067--41204116	11	4.5	11	73	16	50	14	0	46	40	1.44
41204037--41204117	22	3.7	22	76	12	85	12	1	48	38	1.49
41204062--41204126	22	2.9	22	84	11	62	15	1	44	38	1.56
41213983--41214012	12	2.5	12	100	0	60	6	26	40	26	1.81
41216003--41216034	16	1.9	17	93	6	57	53	6	0	40	1.26
41218179--41218233	19	2.9	19	91	0	83	36	34	7	21	1.81
41225694--41225930	124	1.9	124	87	5	354	28	13	24	32	1.94
41229115--41229509	23	15.2	24	76	19	254	27	0	25	47	1.53
41229136--41229622	28	17.8	28	77	16	424	27	0	25	47	1.54
41229133--41229235	34	3.2	33	86	11	144	24	0	29	46	1.53
41229480--41229592	34	3.5	32	83	14	144	25	0	25	47	1.58
41229575--41229662	24	3.7	23	77	10	97	28	0	25	46	1.53
41229615--41229650	17	2.1	18	89	5	56	30	0	19	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41231934--41231989	28	2.0	29	89	3	87	62	1	0	35	1.06
41232031--41232072	22	1.9	22	90	0	66	33	0	33	33	1.58
41232022--41232124	52	2.0	51	81	12	122	33	0	33	33	1.58
41232118--41232163	12	4.0	12	80	11	60	47	0	21	30	1.51
41232074--41232165	22	4.2	22	87	8	125	43	0	27	29	1.55
41235181--41235311	27	4.9	27	81	5	149	24	14	19	41	1.88
41235181--41235311	53	2.5	53	83	3	165	24	14	19	41	1.88
41236783--41236833	25	2.0	25	88	0	75	17	43	11	27	1.84
41238721--41238982	114	2.3	114	83	1	321	35	17	15	31	1.91
41242393--41242478	44	2.0	41	82	13	102	52	4	9	33	1.54
41242457--41242517	29	2.0	31	87	6	90	47	4	8	39	1.55
41242550--41242607	25	2.4	24	80	5	71	53	3	8	34	1.49
41244035--41244126	44	2.1	44	87	0	130	31	23	14	30	1.94
41244246--41244562	139	2.3	138	91	1	501	29	20	18	30	1.97
41244486--41244828	44	7.8	44	77	2	260	28	23	18	30	1.98
41244492--41244738	133	1.9	133	85	0	341	27	22	19	30	1.98
41244991--41245270	103	2.7	102	83	3	328	30	22	17	29	1.97
41245201--41245316	44	2.6	45	81	9	123	30	26	18	25	1.98
41245482--41245669	44	4.4	42	72	16	100	28	21	19	30	1.97
41245791--41245957	89	1.9	89	82	5	212	21	22	27	28	1.99
41246273--41246330	24	2.4	24	82	5	73	29	20	13	36	1.91
41247347--41247521	68	2.5	71	82	6	209	8	24	14	52	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41248949--41249064	42	2.9	39	77	16	98	51	2	9	36	1.48
41251214--41251265	21	2.6	20	93	6	88	36	11	15	36	1.84
41251749--41251792	17	2.6	17	82	3	54	40	9	0	50	1.34
41251955--41252012	30	1.9	31	86	10	84	36	3	5	55	1.39
41253149--41253722	115	5.0	114	83	3	611	24	21	23	29	1.99
41253166--41253734	229	2.5	227	79	5	601	25	21	23	29	1.99
41253677--41253755	41	1.9	41	86	0	113	21	18	24	35	1.96
41254216--41254259	20	2.1	21	87	4	63	29	0	25	45	1.54
41254363--41254432	14	4.9	14	76	1	59	21	1	41	35	1.62
41254519--41254590	34	2.1	36	86	5	103	19	0	44	36	1.51
41254512--41254583	27	2.6	28	82	10	85	20	0	43	36	1.53
41254968--41255051	28	3.1	28	70	13	95	47	0	8	44	1.33
41254971--41255051	24	3.2	24	80	13	108	45	0	8	45	1.34
41254956--41255082	52	2.4	52	72	2	130	54	1	7	37	1.37
41255101--41255815	365	2.0	366	92	0	1191	30	14	20	35	1.92
41256475--41256512	18	2.1	18	100	0	76	26	10	15	47	1.78
41257558--41257601	23	1.9	23	95	0	79	43	18	0	38	1.50
41257729--41258036	9	35.3	9	72	14	236	45	21	1	32	1.60
41257729--41258006	79	3.4	79	85	9	346	45	21	1	31	1.59
41257808--41257839	16	2.0	16	93	0	55	53	18	0	28	1.45
41257963--41258036	25	2.9	25	81	2	67	43	21	2	32	1.67
41260572--41260633	21	3.0	21	85	0	88	33	16	43	6	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41260576--41260645	21	3.3	21	83	0	86	34	17	42	5	1.73
41261028--41261255	43	5.4	42	79	3	179	26	18	21	33	1.97
41261090--41261255	85	2.0	85	85	1	226	27	19	21	31	1.97
41261090--41261255	42	3.9	43	83	2	192	27	19	21	31	1.97
41261090--41261256	84	2.0	84	84	2	219	26	20	20	31	1.98
41263444--41263505	20	3.4	19	79	18	69	19	3	8	69	1.28
41276888--41276947	24	2.5	24	73	10	59	50	26	8	15	1.72
41278925--41279013	43	2.1	43	86	0	124	40	24	15	19	1.90
41281102--41281139	18	2.1	18	100	0	76	10	39	23	26	1.87
41286764--41286788	13	1.9	13	100	0	50	36	24	16	24	1.94
41289049--41289262	27	8.0	27	85	7	242	43	18	19	17	1.88
41289042--41289264	54	4.1	54	84	8	285	44	18	18	17	1.87
41289050--41289274	81	2.8	80	84	6	285	43	19	18	18	1.89
41291418--41291470	13	4.1	13	82	0	61	35	20	11	32	1.88
41295082--41295109	14	2.0	14	100	0	56	50	14	7	28	1.69
41296762--41297197	40	10.9	40	81	2	453	14	15	27	43	1.85
41297807--41297904	30	3.3	30	84	12	139	23	21	7	47	1.75
41298898--41298958	10	5.9	10	76	12	52	77	0	21	1	0.86
41298905--41298953	18	2.8	18	84	9	57	79	0	18	2	0.83
41298905--41298962	11	5.2	11	80	14	57	77	0	20	1	0.86
41298898--41298952	28	2.0	28	82	7	67	80	0	18	1	0.81
41305680--41305726	16	2.9	16	81	15	53	76	0	21	2	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41310913--41310947	14	2.5	14	95	0	61	62	11	0	25	1.28
41312996--41313071	23	3.3	23	81	7	100	31	25	19	23	1.98
41315237--41315268	17	1.9	17	93	6	57	68	0	12	18	1.20
41321520--41321578	29	2.0	29	100	0	118	37	13	28	20	1.91
41328675--41329103	215	2.0	215	97	0	804	28	16	24	30	1.96
41329613--41329637	13	1.9	13	100	0	50	36	0	16	48	1.46
41345389--41345461	31	2.4	31	81	4	85	42	9	6	41	1.64
41345637--41345663	8	3.4	8	100	0	54	62	0	0	37	0.95
41346825--41346911	44	2.0	44	90	0	138	37	9	3	49	1.52
41352571--41352664	27	3.6	27	81	8	97	20	13	5	60	1.52
41352921--41352997	34	2.3	35	84	8	97	28	11	16	42	1.84
41352934--41353051	34	3.5	33	79	4	101	33	11	13	42	1.79
41352999--41353070	35	2.1	35	91	0	117	36	11	13	38	1.81
41353242--41353299	18	3.0	18	79	16	71	27	18	22	31	1.97
41354214--41354262	26	1.9	25	83	4	62	34	0	2	63	1.06
41355731--41355791	18	3.3	18	73	13	52	77	1	14	6	1.05
41360472--41360510	2	19.5	2	89	0	60	5	0	43	51	1.24
41361449--41361488	21	1.9	21	89	0	62	65	2	0	32	1.06
41366021--41366060	20	2.0	20	100	0	80	40	15	20	25	1.90
41386371--41386459	27	3.2	27	69	17	83	38	13	3	44	1.60
41386366--41386477	56	2.0	56	94	0	197	36	15	4	43	1.67
41416521--41416734	107	2.0	106	90	4	333	33	17	17	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41417338--41417385	3	16.0	3	86	0	60	58	2	4	35	1.29
41418524--41418572	19	2.6	19	93	0	80	28	22	24	24	1.99
41425843--41425901	24	2.4	26	72	16	63	49	8	13	28	1.71
41428986--41429026	18	2.3	18	95	0	73	39	21	14	24	1.91
41428993--41429031	18	2.2	18	95	0	69	41	25	12	20	1.88
41429283--41429587	27	11.3	27	86	1	371	19	16	21	42	1.88
41430870--41430942	28	2.6	28	97	0	137	10	21	42	24	1.85
41431764--41431793	15	2.0	15	100	0	60	20	0	6	73	1.05
41432870--41432910	23	1.9	22	85	14	59	39	12	9	39	1.76
41436519--41436581	32	2.0	32	96	3	119	19	6	19	55	1.63

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218