Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  218  of  218  ( 26060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65677704--65677735
13
2.5
13
94
0
55
31
0
12
56
1.37
65677830--65678071
50
4.7
52
81
7
271
27
23
28
20
1.99
65677830--65678079
100
2.4
103
84
5
317
27
22
28
21
1.99
65682141--65682205
30
2.2
30
82
0
76
32
24
6
36
1.80
65683841--65684077
103
2.3
103
87
2
341
17
20
30
31
1.96
65686590--65686685
12
7.7
12
81
6
93
59
3
7
30
1.40
65686603--65686691
3
29.7
3
80
8
92
62
2
5
29
1.30
65687862--65687894
15
2.2
15
89
10
50
6
6
45
42
1.53
65688341--65688709
87
4.3
87
74
12
206
26
20
20
31
1.98
65688381--65688709
44
7.6
45
75
11
230
26
20
21
31
1.98
65694545--65705736
7
1545.4
7
84
13
13445
44
41
0
13
1.48
65694573--65705436
71
155.9
69
79
16
5390
44
41
0
13
1.47
65705404--65705489
27
3.0
27
74
8
82
39
53
0
6
1.28
65705434--65705458
13
1.9
13
100
0
50
24
72
0
4
1.02
65705498--65705550
24
2.2
24
86
6
72
28
54
7
9
1.59
65705485--65705542
16
3.8
16
74
14
52
24
53
10
12
1.68
65705498--65705566
25
2.8
24
82
10
77
27
52
10
10
1.67
65705511--65705573
24
2.6
24
82
9
74
30
49
11
9
1.70
65705627--65705739
13
8.2
13
75
10
91
41
53
0
5
1.24
65705627--65705740
20
5.5
21
76
7
99
42
52
0
5
1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218

The End!