Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  41  of  218  ( 26060 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12756523--12756576
20
2.7
19
83
16
74
75
7
7
9
1.18
12757777--12757822
18
2.5
19
78
3
58
69
6
8
15
1.34
12757815--12757865
13
3.8
13
78
17
52
70
1
3
23
1.14
12765904--12765936
16
2.1
16
94
0
57
54
12
21
12
1.69
12767460--12767541
29
2.9
28
73
23
73
59
0
2
37
1.11
12767534--12767599
19
3.4
19
77
4
69
62
3
6
28
1.34
12767842--12767872
16
1.9
16
100
0
62
25
6
0
67
1.14
12767821--12767891
35
2.0
35
83
2
88
36
2
1
59
1.21
12767880--12767981
29
3.6
29
68
16
77
35
0
0
63
1.01
12767865--12767958
46
2.0
46
82
8
111
40
0
0
59
0.97
12767885--12767939
28
2.0
28
89
6
87
38
0
0
61
0.96
12767897--12767963
18
3.6
18
82
9
80
34
0
0
65
0.93
12767943--12767976
11
3.1
11
86
0
50
17
2
0
79
0.86
12767983--12768162
90
2.0
89
83
8
224
31
7
22
38
1.81
12767999--12768185
90
2.1
91
82
8
222
31
6
19
41
1.78
12769440--12769550
53
2.0
54
94
5
197
55
7
14
22
1.63
12775691--12775727
18
2.1
18
90
10
58
54
0
0
45
1.00
12775691--12775722
9
3.4
10
87
12
50
46
0
0
53
1.00
12775691--12775728
19
2.1
18
90
5
58
55
0
0
44
0.99
12775837--12775888
21
2.5
21
93
0
86
30
36
9
23
1.87
12780490--12780560
17
4.4
16
72
15
56
33
0
5
60
1.20
12781148--12781196
7
7.0
7
100
0
98
57
0
0
42
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12781571--12781610
21
1.9
20
90
10
62
62
17
0
20
1.33
12781886--12781938
16
3.5
15
80
16
56
43
1
0
54
1.11
12781888--12781996
7
15.9
7
68
17
50
41
1
0
55
1.16
12781886--12781991
17
6.5
17
70
17
64
40
1
0
56
1.16
12781909--12781959
24
2.2
22
86
6
66
37
1
1
58
1.20
12781904--12781991
33
2.6
34
78
12
92
39
1
1
57
1.13
12794011--12794088
31
2.5
30
77
6
84
33
1
0
65
1.01
12794007--12794094
42
2.2
40
82
12
108
31
1
0
67
0.99
12797332--12797359
9
3.1
9
100
0
56
57
10
0
32
1.33
12797302--12797442
68
2.1
65
93
3
237
45
8
4
41
1.56
12797431--12797472
16
2.6
16
92
0
66
42
7
2
47
1.43
12797446--12797500
22
2.5
22
84
0
74
43
1
1
52
1.22
12800570--12800627
23
2.5
22
76
17
64
44
5
5
44
1.48
12806838--12806883
21
2.2
21
84
0
56
56
21
4
17
1.58
12808115--12808145
16
1.9
16
93
0
53
35
22
0
41
1.54
12811187--12811221
16
2.2
16
89
0
52
60
22
0
17
1.37
12811177--12811219
22
1.9
22
85
4
59
58
23
0
18
1.40
12811177--12811229
25
2.2
24
80
12
56
62
18
0
18
1.33
12815878--12815957
38
2.1
39
85
2
108
23
0
22
53
1.46
12815900--12816000
41
2.5
40
81
12
127
22
0
20
56
1.42
12816003--12816092
29
3.1
29
76
19
89
45
5
16
32
1.71
12822627--12822677
18
2.7
19
78
9
59
43
3
5
47
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12823840--12823891
16
3.4
17
68
26
53
28
1
3
65
1.21
12828630--12828870
50
4.7
50
79
7
211
22
28
21
27
1.99
12839205--12839262
6
9.7
6
80
12
66
44
0
0
55
0.99
12839202--12839262
25
2.5
25
84
10
74
44
0
0
55
0.99
12839256--12839294
7
5.6
7
100
0
78
56
0
0
43
0.99
12839312--12839345
17
2.0
17
100
0
68
29
0
0
70
0.87
12839537--12839639
29
3.5
29
75
10
102
39
12
19
28
1.88
12839564--12839668
31
3.5
30
75
7
115
41
14
20
23
1.88
12839537--12839668
59
2.2
60
88
8
198
40
12
20
26
1.89
12845319--12845361
18
2.4
18
96
0
77
37
20
11
30
1.89
12849775--12849799
13
1.9
13
100
0
50
40
16
40
4
1.67
12852348--12852373
4
6.5
4
100
0
52
76
0
0
23
0.78
12864804--12865325
44
11.9
44
91
0
794
29
20
23
26
1.99
12865841--12865878
20
1.9
19
89
5
58
5
2
10
81
0.94
12875168--12875225
29
2.0
30
86
3
82
36
1
5
56
1.32
12883853--12883890
19
2.0
19
94
0
67
39
5
13
42
1.66
12883914--12883993
41
2.0
41
87
4
119
37
5
10
47
1.59
12887681--12887719
19
2.1
19
95
0
69
38
5
12
43
1.65
12898463--12898513
24
2.1
24
100
0
102
35
23
7
33
1.84
12899968--12899995
12
2.3
12
100
0
56
14
25
25
35
1.93
12902403--12902596
93
2.1
91
87
5
275
44
4
4
47
1.41
12902629--12902662
17
2.0
17
94
0
59
44
5
0
50
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12902629--12902667
17
2.4
16
87
8
53
43
5
0
51
1.24
12902633--12902672
17
2.3
18
83
12
57
47
5
0
47
1.24
12902752--12902803
15
3.6
15
80
12
56
44
0
1
53
1.11
12902628--12902919
120
2.4
120
91
5
459
41
2
5
50
1.40
12902701--12902884
59
3.1
59
65
21
148
41
2
7
49
1.42
12902881--12902922
15
2.7
16
82
14
52
45
0
2
52
1.13
12902872--12902913
15
2.9
15
82
10
52
47
0
0
52
1.00
12902856--12903169
154
2.0
156
95
1
569
46
5
3
44
1.41
12903022--12903056
18
2.0
17
88
5
52
45
0
0
54
0.99
12902857--12903092
75
3.1
75
65
16
203
46
2
3
47
1.34
12903289--12903327
16
2.4
16
86
0
51
28
33
2
35
1.71
12903302--12903358
16
3.6
16
95
0
87
33
36
0
29
1.58
12903529--12903580
26
2.0
26
100
0
104
34
15
15
34
1.89
12903478--12903626
77
1.9
77
100
0
298
40
17
10
30
1.84
12903594--12903703
33
3.3
33
69
15
93
40
16
9
33
1.80
12906754--12906840
28
3.1
28
69
17
74
43
1
2
52
1.21
12906897--12907296
137
2.9
138
83
5
420
46
5
3
44
1.44
12907045--12907079
18
2.0
17
88
5
52
45
0
0
54
0.99
12907058--12907099
16
2.7
15
85
14
50
50
2
0
47
1.14
12907203--12907237
15
2.3
15
90
0
52
45
0
2
51
1.16
12906930--12907330
138
2.9
137
85
4
506
46
6
3
43
1.47
12907453--12907488
16
2.2
16
100
0
72
38
36
0
25
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12908799--12908850
25
2.1
25
96
0
95
46
9
3
40
1.55
12910252--12910288
14
2.6
14
100
0
74
16
5
59
18
1.55
12910683--12910726
7
6.4
7
89
5
54
68
6
0
25
1.14
12910671--12910720
14
3.8
13
80
15
50
68
6
2
24
1.23
12910678--12910726
14
3.6
14
81
5
57
69
8
0
22
1.14
12912363--12912803
114
3.9
115
87
3
554
27
20
24
27
1.99
12912589--12912990
187
2.1
187
89
1
619
27
21
25
25
2.00
12912702--12912876
73
2.4
74
86
0
235
28
21
23
26
1.99
12912776--12913253
114
4.2
114
88
2
717
26
21
25
25
1.99
12912475--12913085
301
2.0
301
88
2
915
27
20
25
26
1.99
12913193--12913319
41
3.1
41
93
0
218
21
21
29
28
1.98
12913484--12913527
13
3.1
14
77
9
54
18
0
36
45
1.49
12913484--12913527
7
6.3
7
82
10
54
18
0
36
45
1.49
12913487--12913526
20
2.0
21
95
5
73
17
0
32
50
1.47
12913784--12913824
21
2.0
20
85
4
55
19
0
41
39
1.52
12913830--12913876
22
2.1
22
84
0
58
29
0
34
36
1.58
12917045--12917087
4
10.8
4
94
0
77
25
0
20
53
1.46
12917790--12917979
43
4.4
43
90
0
308
22
18
27
31
1.97
12917790--12917979
86
2.2
86
96
0
344
22
18
27
31
1.97
12924629--12924681
20
2.7
20
90
0
79
33
16
15
33
1.90
12926214--12926245
15
2.1
15
94
0
55
28
6
31
34
1.82
12929746--12929828
25
3.3
25
78
6
87
25
22
21
30
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12929766--12929837
25
2.9
25
73
8
65
26
23
19
30
1.98
12954927--12954978
18
2.6
21
74
22
58
51
3
28
15
1.60
12965361--12965473
44
2.6
43
81
6
113
23
18
26
31
1.97
12965367--12965524
42
3.7
43
75
8
126
24
17
27
31
1.97
12972476--12972528
26
2.0
26
100
0
106
45
0
15
39
1.46
12972476--12972538
26
2.4
26
92
5
92
44
0
15
39
1.47
12979754--12979813
9
6.7
9
78
0
57
6
30
1
61
1.31
12980212--12980393
48
3.8
48
90
1
267
21
22
19
36
1.95
12988120--12988503
198
1.9
199
91
0
626
26
26
22
24
2.00
12991378--12991415
12
3.2
12
85
14
60
81
0
2
15
0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218