genome.fa.s23.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  116  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34178501--34178570	14	4.9	14	83	3	68	17	60	0	22	1.37
34178501--34178557	21	2.7	21	83	0	78	17	63	0	19	1.32
34189064--34189106	21	2.0	21	95	0	77	27	30	13	27	1.95
34189299--34189420	43	2.8	43	87	0	163	38	25	14	21	1.92
34189428--34189593	43	3.9	43	81	3	163	38	19	14	27	1.91
34189317--34189536	116	1.9	116	88	0	332	36	23	15	23	1.94
34192101--34192371	43	6.3	43	79	3	224	40	20	12	26	1.88
34192109--34192293	86	2.2	86	87	0	262	41	21	12	24	1.88
34192101--34192371	129	2.1	128	83	5	332	40	20	12	26	1.88
34192109--34192320	86	2.5	86	84	0	253	41	21	13	24	1.89
34193462--34193527	33	2.0	33	100	0	132	36	27	9	27	1.87
34193471--34193528	19	3.3	19	63	22	54	36	31	8	24	1.85
34197012--34197044	17	1.9	17	100	0	66	12	12	15	60	1.59
34202280--34202330	4	12.5	4	80	15	52	74	1	0	23	0.92
34202273--34202319	19	2.6	18	80	12	60	72	2	0	25	0.96
34202271--34202330	22	2.6	24	78	21	74	73	1	0	25	0.93
34204887--34205055	94	1.8	92	88	2	257	30	22	15	31	1.95
34215665--34215743	37	2.1	37	88	4	115	25	30	18	25	1.98
34215862--34216242	47	8.1	47	94	1	629	28	30	9	32	1.88
34219319--34219388	33	2.1	33	86	0	95	24	24	20	31	1.98
34257253--34257590	51	6.7	52	79	7	295	29	25	15	28	1.96
34257253--34257590	102	3.3	101	80	8	368	29	25	15	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34257251--34257593	153	2.3	149	78	9	365	29	25	15	29	1.96
34257692--34257724	17	2.1	17	88	11	52	63	6	0	30	1.18
34258820--34258864	12	3.9	12	80	11	58	55	0	0	44	0.99
34258810--34258869	22	2.7	22	97	0	111	56	1	0	41	1.09
34261530--34261555	12	2.2	12	100	0	52	38	0	0	61	0.96
34263215--34263376	51	3.2	51	94	0	279	32	14	22	30	1.94
34264641--34264695	25	2.2	26	83	9	78	63	1	5	29	1.27
34265357--34265394	19	2.1	18	85	14	51	57	0	0	42	0.98
34269193--34269292	50	2.0	51	84	2	130	35	14	16	35	1.88
34275213--34275282	33	2.1	33	86	0	95	41	11	25	21	1.86
34277078--34277106	13	2.2	13	100	0	58	37	6	0	55	1.27
34277518--34277552	16	2.1	17	89	5	54	11	51	0	37	1.38
34284371--34284405	16	2.1	17	89	5	54	37	0	51	11	1.38
34286324--34286410	45	1.9	45	92	0	147	32	21	17	28	1.96
34286421--34286603	51	3.6	50	75	3	179	32	26	16	25	1.96
34286419--34286606	101	1.9	101	87	3	279	32	26	15	25	1.96
34294251--34294545	50	5.9	50	87	0	383	22	31	20	25	1.98
34294251--34294590	100	3.3	99	83	4	367	24	30	19	25	1.98
34297612--34297648	7	5.3	7	100	0	74	13	56	0	29	1.37
34299926--34300188	131	2.0	131	89	1	402	43	5	26	24	1.76
34302359--34302404	18	2.5	19	82	7	58	69	8	4	17	1.31
34313298--34313394	51	1.9	50	89	2	149	25	26	3	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34316415--34316476	27	2.3	26	86	5	88	32	14	11	41	1.81
34320587--34320847	43	6.0	43	77	3	234	27	13	15	43	1.85
34320587--34320810	90	2.6	86	80	5	268	26	14	15	43	1.85
34320702--34320810	22	5.0	22	66	4	69	26	16	16	40	1.89
34320788--34320848	21	2.9	21	65	2	50	26	11	18	44	1.83
34328771--34329189	219	1.9	217	93	2	716	33	10	21	33	1.88
34340544--34340585	17	2.5	16	88	7	57	42	4	0	52	1.22
34340939--34341028	44	2.0	44	86	0	126	48	3	10	37	1.53
34343859--34343927	35	2.0	35	94	0	120	55	2	14	27	1.54
34344744--34344790	20	2.4	19	82	10	60	53	0	21	25	1.46
34345255--34345303	24	2.0	24	84	8	62	24	6	20	48	1.72
34345704--34345831	54	2.4	54	84	2	150	28	25	30	15	1.96
34347370--34347491	27	4.5	26	80	5	118	11	24	23	40	1.88
34347370--34347491	54	2.2	55	81	9	135	11	24	23	40	1.88
34347477--34347507	13	2.4	13	94	0	53	6	12	19	61	1.53
34349841--34349936	28	3.5	28	81	5	115	13	23	22	39	1.90
34354702--34354748	23	2.0	23	84	8	60	61	10	10	17	1.55
34356560--34356609	25	1.9	25	84	8	64	34	10	0	56	1.33
34356574--34356681	56	2.0	53	85	8	146	31	13	2	51	1.56
34366225--34366288	33	1.9	33	90	0	101	32	25	17	25	1.96
34366275--34366317	21	2.0	21	90	0	68	11	13	27	46	1.78
34366427--34366530	42	2.5	42	85	1	136	25	21	24	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34366649--34366682	15	2.3	15	89	0	50	58	23	2	14	1.50
34372508--34372758	9	29.8	9	71	12	149	30	3	19	46	1.67
34372497--34372700	25	8.1	25	76	5	151	30	3	20	45	1.69
34372569--34372716	16	9.0	16	72	14	106	30	2	20	45	1.65
34372497--34372700	50	4.0	50	82	1	210	30	3	20	45	1.69
34372569--34372757	41	4.8	41	75	15	173	30	2	19	47	1.63
34372685--34372750	25	2.6	25	87	0	96	31	1	13	53	1.49
34372865--34372913	24	2.0	24	84	0	62	32	0	14	53	1.41
34373031--34373257	42	5.2	42	65	20	108	50	4	3	40	1.42
34373076--34373108	15	2.2	15	94	0	57	54	3	3	39	1.31
34373123--34373184	21	3.0	21	70	23	51	48	4	4	41	1.46
34372966--34373351	177	2.2	176	99	0	754	49	4	4	40	1.44
34373253--34373285	15	2.2	15	94	0	57	54	3	3	39	1.31
34375304--34375353	23	2.2	23	85	7	66	38	4	38	20	1.71
34376513--34377319	266	3.1	266	90	4	1296	28	20	18	32	1.96
34377901--34378101	41	4.9	41	90	0	294	22	21	26	29	1.99
34379033--34379131	7	14.7	7	73	12	57	21	0	39	39	1.53
34379061--34379139	21	3.9	21	76	15	76	25	0	32	41	1.56
34378992--34379254	143	1.8	141	82	9	336	26	0	30	42	1.60
34380339--34380384	21	2.2	21	84	7	58	23	50	2	23	1.61
34383103--34383203	43	2.3	43	86	3	132	23	17	27	30	1.97
34387583--34387630	19	2.6	18	78	15	53	54	6	2	37	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34387576--34387618	18	2.2	20	88	12	63	60	6	0	32	1.23
34390547--34390592	22	2.1	22	95	0	83	19	15	26	39	1.91
34390913--34390992	36	2.2	36	84	0	106	32	15	25	27	1.95
34390828--34391174	104	3.3	104	77	6	310	31	14	23	29	1.94
34402102--34402135	17	2.1	16	88	5	50	76	14	0	8	1.01
34406409--34406464	9	5.9	9	76	19	51	28	1	1	67	1.10
34406409--34406560	10	15.4	10	68	19	63	30	4	2	62	1.29
34406548--34406597	20	2.5	20	78	12	66	44	2	0	54	1.11
34407294--34407345	27	1.9	27	84	0	68	30	5	11	51	1.61
34411342--34411459	50	2.3	50	85	5	148	33	16	13	36	1.88
34413711--34413750	13	3.2	13	86	6	57	27	5	15	52	1.63
34416969--34417033	27	2.4	27	76	0	67	26	27	10	35	1.90
34423231--34423288	27	2.1	27	83	0	71	25	29	10	34	1.89
34433417--34433470	24	2.2	26	78	18	62	48	0	0	51	1.00
34436814--34436858	22	2.2	20	88	8	63	48	8	20	22	1.76
34437135--34437177	9	4.7	9	85	2	59	34	0	0	65	0.93
34437136--34437180	19	2.3	20	85	11	67	35	0	0	64	0.94
34437135--34437181	18	2.6	18	89	3	67	36	0	0	63	0.94
34438328--34438370	19	2.2	20	88	12	63	53	6	0	39	1.28
34441675--34441705	14	2.2	14	100	0	62	22	6	22	48	1.73
34448956--34448986	11	2.8	11	100	0	62	45	16	19	19	1.86
34449488--34449519	17	1.9	16	93	6	55	21	18	31	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34468153--34468342	95	2.0	93	86	4	265	31	20	14	33	1.93
34473486--34473856	190	2.0	190	89	2	575	30	15	16	37	1.90
34475090--34475129	6	6.7	6	100	0	80	85	15	0	0	0.61
34488861--34488892	11	2.9	11	100	0	64	65	6	0	28	1.16
34494561--34494599	18	2.1	19	90	4	62	61	0	5	33	1.18
34507363--34507393	15	2.1	15	100	0	62	25	6	12	54	1.62
34510157--34510234	9	8.7	9	76	5	77	41	19	14	25	1.89
34510157--34510234	18	4.3	18	81	4	86	41	19	14	25	1.89
34510157--34510234	27	2.9	27	78	3	86	41	19	14	25	1.89
34514698--34514743	10	4.5	10	88	2	65	28	0	23	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218