genome.fa.s23.2.7.7.80.10.50.1000.194.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  194  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57395723--57395911	17	10.8	17	75	10	114	43	12	12	31	1.79
57395705--57395911	18	11.8	17	75	11	109	43	11	12	32	1.79
57395721--57395911	106	1.8	104	83	10	253	43	12	12	31	1.79
57396012--57396155	55	2.7	53	80	3	171	45	12	13	29	1.80
57395729--57396155	18	24.6	18	69	15	206	44	11	13	29	1.80
57396219--57396261	9	5.0	9	83	11	54	16	0	0	83	0.64
57396219--57396262	19	2.4	18	85	7	63	15	0	0	84	0.63
57396255--57396291	19	1.9	20	94	5	67	32	10	13	43	1.79
57396290--57396337	15	3.0	16	80	19	64	41	12	14	31	1.83
57397111--57397160	23	2.1	24	82	17	61	4	16	10	70	1.30
57397654--57397755	30	3.4	30	83	2	125	43	3	23	29	1.72
57398025--57398249	56	4.1	55	81	4	265	36	16	16	30	1.92
57398025--57398229	112	1.8	110	88	5	313	33	18	16	32	1.93
57398228--57398262	14	2.5	14	90	0	52	60	2	17	20	1.49
57398193--57398406	86	2.5	87	88	1	322	35	19	18	27	1.95
57398332--57398862	72	7.2	72	86	5	672	35	18	16	30	1.93
57398328--57398858	145	3.6	146	87	5	684	34	18	16	30	1.93
57453110--57453406	87	3.4	87	74	8	307	28	21	23	26	1.99
57453203--57453444	41	5.7	41	70	9	155	27	21	24	27	1.99
57453235--57453323	46	1.9	46	88	0	133	26	20	25	26	1.99
57453109--57453451	174	2.0	174	92	0	578	29	21	23	26	1.99
57457809--57457841	15	2.1	16	88	5	50	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57458019--57458077	20	3.2	18	79	11	66	61	0	1	37	1.07
57458018--57458080	19	3.2	20	79	6	74	58	0	1	39	1.07
57458223--57458253	15	2.1	15	93	0	53	35	0	0	64	0.94
57458231--57458275	17	2.6	17	83	16	58	31	2	0	66	1.04
57458245--57458293	21	2.5	19	86	6	62	28	6	2	63	1.30
57459292--57459329	12	3.2	12	82	10	51	55	0	10	34	1.34
57459283--57459329	24	2.0	24	87	8	69	57	0	10	31	1.33
57461433--57461474	22	1.9	22	100	0	84	71	14	4	9	1.28
57481580--57481636	26	2.2	26	87	0	78	47	3	5	43	1.43
57484564--57484605	20	2.1	20	86	0	57	47	0	7	45	1.30
57495986--57496152	71	2.4	71	80	2	192	26	23	21	28	1.99
57499465--57499556	22	4.2	22	81	5	123	29	28	1	41	1.63
57499528--57499586	30	2.0	30	93	0	100	30	35	0	33	1.58
57499506--57499605	52	1.9	52	86	8	141	30	33	0	37	1.58
57499558--57499599	22	1.9	22	90	0	66	33	33	0	33	1.58
57499656--57499704	19	2.7	18	78	6	53	32	0	0	67	0.91
57499641--57499697	27	2.0	29	90	6	91	36	0	1	61	1.07
57499644--57499704	28	2.1	29	85	8	81	36	0	1	62	1.05
57499777--57499806	7	4.4	7	95	4	53	43	0	0	56	0.99
57499802--57499835	15	2.3	15	90	5	52	26	0	5	67	1.13
57503598--57503854	125	2.1	125	90	1	399	31	22	15	29	1.95
57504117--57504182	29	2.3	29	81	5	80	40	16	15	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57507727--57507757	16	2.0	16	93	6	55	67	6	6	19	1.35
57508391--57508442	6	8.3	6	87	8	77	1	13	1	82	0.84
57510099--57510314	111	1.9	111	92	0	360	20	36	14	28	1.92
57510551--57510645	30	3.2	30	86	0	109	16	51	8	23	1.71
57510575--57510660	30	2.9	30	85	0	82	20	53	6	18	1.67
57510965--57511166	93	2.2	93	90	3	309	19	34	13	32	1.91
57521567--57521830	45	5.9	45	95	0	465	38	15	20	25	1.92
57524012--57524275	45	5.9	45	95	0	456	39	15	19	25	1.91
57532799--57532864	31	2.1	31	91	5	107	43	7	12	36	1.70
57532805--57532871	31	2.2	32	86	5	93	47	7	11	32	1.68
57534341--57534389	25	2.0	25	84	8	64	51	4	6	38	1.46
57542870--57542894	13	1.9	13	100	0	50	48	0	0	52	1.00
57547046--57547281	67	3.6	66	86	2	314	25	10	8	55	1.61
57550015--57550041	14	1.9	14	100	0	54	0	0	55	44	0.99
57553821--57553872	19	2.9	18	72	13	54	61	3	0	34	1.14
57565638--57565676	20	2.0	20	85	5	53	56	5	7	30	1.49
57566028--57566118	17	5.4	17	69	23	66	43	3	2	50	1.30
57571777--57571809	3	11.0	3	100	0	66	33	0	0	66	0.92
57576292--57576494	90	2.2	90	81	6	232	37	17	20	24	1.94
57586320--57586361	15	2.7	16	82	14	52	52	2	0	45	1.13
57586329--57586370	15	2.9	15	82	10	52	52	0	0	47	1.00
57586355--57586542	61	3.1	61	71	14	208	49	6	1	42	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57586323--57586616	120	2.4	122	94	1	504	50	5	2	42	1.36
57586439--57586490	15	3.6	15	80	12	56	53	1	0	44	1.11
57586358--57586541	59	3.1	59	67	20	173	49	7	1	42	1.37
57586557--57586839	91	3.0	93	84	7	317	48	3	3	44	1.35
57586657--57586717	28	2.2	28	85	5	81	50	3	0	45	1.17
57586632--57586839	91	2.3	90	90	4	326	46	4	3	45	1.39
57586664--57586807	47	3.1	46	65	23	113	49	4	2	44	1.33
57586657--57586799	44	3.2	43	68	16	119	48	3	2	46	1.31
57586682--57586820	47	3.0	47	68	17	137	49	4	2	43	1.34
57590103--57590128	6	4.3	6	100	0	52	50	0	0	50	1.00
57590213--57590251	17	2.4	17	86	4	53	51	2	12	33	1.54
57590628--57590652	12	2.1	12	100	0	50	40	20	0	40	1.52
57595381--57595445	34	1.9	34	84	6	87	29	18	23	29	1.98
57597414--57597438	13	1.9	13	100	0	50	48	0	8	44	1.32
57603087--57603248	79	2.1	79	97	0	306	24	15	16	44	1.85
57603551--57603587	18	2.1	18	90	5	58	29	5	0	64	1.15
57608902--57609095	17	10.9	17	76	13	169	43	10	15	29	1.81
57608902--57609157	53	4.8	54	77	12	235	43	9	15	31	1.79
57608902--57609157	35	7.2	35	79	8	216	43	9	15	31	1.79
57609105--57609146	18	2.3	18	91	0	66	54	7	16	21	1.65
57609295--57609333	20	2.0	20	89	0	60	43	7	7	41	1.62
57609667--57609708	17	2.4	17	88	4	57	2	14	0	83	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57610037--57610065	9	3.3	9	95	4	51	10	0	0	89	0.48
57610037--57610125	17	5.0	18	73	17	62	4	17	0	77	0.93
57610310--57611010	76	9.2	77	87	4	935	34	20	17	27	1.95
57610316--57611002	225	3.0	226	86	6	926	33	20	17	27	1.95
57622871--57623103	18	13.1	17	72	9	162	45	11	13	29	1.78
57622871--57623103	53	4.4	52	75	10	202	45	11	13	29	1.78
57622871--57623058	35	5.3	35	79	6	159	45	11	13	29	1.79
57622871--57623102	35	6.5	34	75	7	153	45	11	13	29	1.78
57623626--57623663	14	2.7	14	84	15	60	0	18	0	81	0.69
57623614--57623663	16	3.2	17	81	18	65	0	18	0	82	0.68
57623612--57623663	11	4.2	12	80	20	63	0	19	0	80	0.71
57624000--57624081	13	6.5	13	76	5	78	3	15	1	79	0.94
57624024--57624088	26	2.6	26	80	7	73	0	23	1	75	0.89
57624222--57624276	23	2.3	24	84	6	76	3	9	20	67	1.34
57624747--57624869	30	4.2	30	74	16	98	44	4	13	36	1.66
57632915--57632942	11	2.5	11	100	0	56	17	10	28	42	1.83
57633888--57633940	21	2.5	21	87	0	79	30	28	13	28	1.94
57645323--57645392	27	2.5	28	79	6	79	35	1	0	62	1.04
57657796--57657866	34	2.1	35	86	5	101	22	15	0	61	1.33
57660733--57660788	29	1.9	29	88	0	85	21	1	19	57	1.50
57662921--57662949	6	4.8	6	100	0	58	51	17	0	31	1.45
57667706--57667757	24	2.2	24	89	0	77	55	9	1	32	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57669676--57669727	24	2.2	24	89	0	77	55	9	1	32	1.43
57670514--57670565	25	2.0	27	85	11	72	30	1	3	63	1.23
57671430--57671491	19	3.0	22	68	27	55	45	1	4	48	1.33
57672146--57672184	20	1.9	20	84	5	51	41	2	0	56	1.13
57675336--57675399	32	2.0	32	100	0	128	40	9	15	34	1.80
57675675--57675743	21	3.3	21	68	8	59	47	20	18	13	1.81
57675622--57675819	42	4.7	42	80	3	211	46	15	20	17	1.84
57680294--57680354	22	2.7	23	80	5	72	62	3	0	34	1.12
57682312--57682392	41	2.0	41	82	4	101	19	19	35	24	1.95
57682348--57682427	29	2.8	29	92	0	133	21	23	33	21	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218