genome.fa.s23.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  134  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40808779--40808955	49	3.9	44	80	8	167	36	17	16	29	1.92
40808689--40808955	139	1.9	139	83	3	340	36	16	17	29	1.91
40809064--40809271	89	2.3	89	83	1	238	32	15	21	30	1.95
40809244--40809410	51	3.4	51	74	15	161	37	17	12	31	1.88
40809209--40809410	96	2.1	96	85	1	280	37	17	14	29	1.90
40809240--40809461	96	2.3	95	83	3	275	38	18	14	28	1.90
40809335--40809437	51	2.0	52	84	1	136	39	18	14	27	1.89
40811223--40811283	17	3.8	17	78	8	65	29	0	0	70	0.88
40812317--40812350	17	2.0	17	94	0	59	73	0	0	26	0.83
40812817--40813037	122	1.9	115	85	6	307	27	8	16	48	1.74
40814393--40814591	82	2.4	82	90	1	310	53	14	5	27	1.62
40818575--40818806	50	4.5	50	82	4	241	23	27	21	27	1.99
40820160--40820197	18	2.1	18	95	0	67	13	60	2	23	1.45
40820224--40820269	24	1.9	24	86	0	65	41	36	0	21	1.54
40822702--40822739	16	2.2	17	86	13	51	28	2	2	65	1.19
40824975--40825017	21	2.0	22	82	13	54	0	32	2	65	1.06
40826897--40826949	25	2.1	25	85	3	70	50	11	5	32	1.61
40834533--40834561	14	2.0	15	93	6	51	0	44	0	55	0.99
40838377--40838441	28	2.4	27	78	12	69	67	3	3	26	1.20
40838381--40838437	28	2.0	29	82	6	71	66	3	3	26	1.24
40845050--40845118	35	2.0	35	88	0	102	28	11	20	39	1.87
40845851--40845895	17	2.6	17	92	0	72	42	15	8	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40851919--40851958	20	2.0	20	100	0	80	40	10	20	30	1.85
40866070--40866117	17	2.9	17	78	3	53	56	12	10	20	1.65
40870708--40870754	21	2.2	21	96	0	85	53	10	14	21	1.71
40874771--40875005	27	8.7	27	86	3	303	41	18	20	19	1.91
40874771--40875023	81	3.1	81	87	1	346	41	17	20	20	1.90
40874771--40875033	54	4.9	53	82	8	235	41	18	19	20	1.91
40875199--40875249	26	2.0	26	84	0	66	21	21	17	39	1.93
40875365--40875445	28	2.9	28	77	0	90	19	20	25	33	1.97
40875829--40875892	31	2.1	31	96	0	119	48	6	6	39	1.54
40885330--40885380	11	4.5	11	85	4	66	76	1	3	17	1.03
40885330--40885364	16	2.2	16	90	10	54	82	0	2	14	0.77
40894787--40895028	50	4.7	50	76	5	182	23	25	21	29	1.99
40896382--40896430	21	2.3	21	79	6	55	36	28	16	18	1.92
40900276--40900308	16	2.0	17	88	5	50	27	0	3	69	1.03
40900289--40900340	19	2.7	19	74	8	52	15	3	5	75	1.14
40903507--40903549	21	2.0	21	82	8	52	30	9	9	51	1.65
40907537--40907608	33	2.2	33	87	5	101	11	27	6	54	1.61
40907689--40907739	23	2.2	24	82	10	61	9	23	1	64	1.34
40910804--40910939	50	2.7	50	82	3	166	30	25	19	24	1.98
40916012--40916189	90	2.0	90	93	0	302	33	20	12	32	1.91
40916655--40916686	16	2.0	16	93	0	55	25	15	0	59	1.36
40930171--40930230	29	2.0	31	87	9	88	41	13	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40930632--40930777	27	5.4	27	82	3	141	21	21	17	39	1.92
40932288--40932379	26	3.5	26	76	5	87	35	23	18	21	1.95
40932606--40933026	27	15.6	27	77	8	376	22	15	19	41	1.90
40938418--40938453	17	2.1	17	89	0	54	38	11	2	47	1.54
40940866--40940989	50	2.5	50	82	0	149	25	23	31	20	1.98
40940868--40941008	50	2.8	50	73	8	133	26	22	31	19	1.97
40941298--40941336	20	2.0	20	94	0	69	58	2	23	15	1.49
40941558--40941608	24	2.1	24	92	0	84	23	13	25	37	1.92
40945433--40945466	9	3.8	9	100	0	68	29	11	11	47	1.76
40952642--40952736	27	3.4	28	89	2	129	26	12	28	32	1.93
40952667--40952750	27	3.0	27	87	5	96	29	11	25	33	1.91
40958635--40958814	50	3.6	49	81	2	180	27	21	28	22	1.99
40958635--40958816	100	1.8	100	81	2	231	28	20	28	22	1.99
40959080--40959128	20	2.5	20	78	15	57	55	6	26	12	1.60
40961742--40961781	21	1.9	21	85	10	55	52	0	10	37	1.35
40967567--40967659	46	2.0	46	100	0	186	52	12	6	27	1.64
40967641--40967673	9	3.8	9	88	4	50	66	12	12	9	1.44
40970584--40970647	32	2.0	32	87	6	94	60	4	0	34	1.17
40983251--40983275	11	2.3	11	100	0	50	48	16	0	36	1.46
41005356--41005583	81	2.8	80	85	6	291	44	19	11	24	1.84
41005364--41005624	27	9.7	27	76	11	209	45	19	12	23	1.84
41005820--41005894	26	2.9	26	85	0	87	16	14	22	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41006007--41006144	28	5.0	28	85	0	197	25	22	22	29	1.99
41006007--41006139	56	2.4	56	94	0	230	24	21	23	30	1.99
41012773--41013100	81	4.1	80	80	7	355	44	18	14	22	1.86
41012750--41013128	54	7.1	54	78	7	305	44	18	14	22	1.86
41012771--41013128	27	13.4	27	78	6	205	44	18	14	21	1.85
41013322--41013449	26	4.9	26	79	3	150	15	17	21	44	1.86
41013322--41013450	52	2.5	51	86	5	168	16	17	21	44	1.87
41013556--41013637	28	2.9	28	87	3	112	20	20	24	34	1.97
41016886--41016914	14	2.1	14	100	0	58	20	6	20	51	1.70
41022925--41023040	46	2.6	45	87	6	166	33	12	25	28	1.93
41028820--41029042	40	5.7	40	85	7	287	24	21	27	25	1.99
41036702--41036924	40	5.7	40	84	8	262	24	21	27	25	1.99
41036702--41036922	78	2.8	78	86	6	286	24	22	27	25	2.00
41040774--41040929	29	5.4	29	82	8	169	40	9	25	25	1.85
41040774--41040929	58	2.7	58	85	4	199	40	9	25	25	1.85
41040774--41040960	87	2.1	88	80	11	199	39	10	24	25	1.87
41040775--41040960	58	3.2	57	79	8	173	39	10	24	25	1.88
41040918--41041023	30	3.6	30	90	2	160	38	12	27	21	1.89
41040858--41041054	29	6.7	30	79	10	133	39	11	26	23	1.88
41040884--41041048	59	2.8	59	76	4	165	38	12	26	22	1.89
41046931--41047079	59	2.6	58	80	6	149	37	14	24	23	1.92
41046956--41047079	59	2.1	59	83	1	151	37	16	24	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41046880--41047080	29	6.9	29	72	7	138	37	13	26	22	1.91
41053866--41053991	49	2.6	49	80	8	141	32	21	23	23	1.98
41057162--41057222	27	2.3	27	88	0	95	49	21	13	16	1.79
41057381--41057435	26	2.1	26	82	0	65	20	18	21	40	1.92
41062097--41062126	14	2.1	14	100	0	60	30	30	6	33	1.83
41069855--41069898	22	2.0	21	83	12	54	40	0	0	59	0.98
41075219--41075288	27	2.6	27	77	11	70	50	4	1	44	1.30
41075829--41075863	16	2.2	16	89	0	52	25	31	0	42	1.55
41080216--41080240	10	2.5	10	100	0	50	36	8	24	32	1.84
41083904--41083930	14	1.9	14	100	0	54	70	0	14	14	1.17
41084263--41084552	50	5.7	49	76	7	206	24	27	20	28	1.99
41084895--41084954	30	2.0	30	81	9	70	30	21	10	38	1.86
41091624--41091697	29	2.6	29	86	4	96	25	31	16	27	1.96
41099709--41099782	29	2.6	29	86	4	96	25	31	16	27	1.96
41110152--41110259	15	7.2	15	67	12	78	44	7	22	25	1.79
41110146--41110269	30	4.1	30	93	1	203	43	6	24	25	1.78
41114827--41114934	15	7.2	15	67	12	78	44	7	22	25	1.79
41114821--41114944	30	4.1	30	93	1	203	43	6	24	25	1.78
41117102--41117180	37	2.1	37	88	4	115	25	30	18	25	1.98
41117299--41117867	47	12.1	47	94	2	946	28	30	8	31	1.88
41117353--41117867	237	2.2	235	97	0	976	29	29	8	31	1.87
41122820--41122857	19	2.0	20	84	5	51	60	13	5	21	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41130481--41130539	24	2.5	24	83	5	75	25	5	32	37	1.78
41134779--41134814	15	2.4	15	90	9	56	5	22	0	72	1.05
41136988--41137030	18	2.4	18	88	0	59	18	16	2	62	1.43
41136989--41137036	18	2.7	18	78	15	55	22	14	2	60	1.45
41140694--41140842	28	5.4	28	80	2	176	30	23	22	23	1.99
41140700--41140833	56	2.4	56	92	1	216	29	23	22	23	1.99
41140948--41141050	26	4.0	26	94	0	179	40	25	21	12	1.88
41141229--41141730	27	18.7	27	78	6	434	21	15	19	43	1.87
41141242--41141730	54	9.1	53	79	7	488	21	15	18	44	1.87
41141241--41141730	81	6.1	80	80	4	504	21	15	18	44	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218