genome.fa.s23.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  179  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53769052--53769093	22	2.0	21	85	4	57	7	23	2	66	1.28
53775289--53775319	15	2.1	15	93	0	53	19	19	29	32	1.96
53777670--53777733	25	2.7	24	76	9	69	31	4	4	59	1.38
53777771--53777838	25	2.6	27	69	9	68	38	4	2	54	1.36
53793511--53793562	25	2.1	25	100	0	104	40	3	7	48	1.50
53803222--53803291	23	3.0	24	75	10	72	50	2	0	47	1.16
53811603--53811700	31	3.3	30	76	11	94	62	15	3	19	1.45
53813428--53813494	34	1.9	35	84	3	91	32	10	13	43	1.78
53813443--53813481	20	2.0	20	84	0	51	28	12	12	46	1.79
53817777--53817819	19	2.3	19	88	8	61	44	0	6	48	1.29
53817703--53817886	100	1.8	100	100	0	368	42	7	14	34	1.74
53820265--53820296	16	2.1	16	94	5	57	65	0	0	34	0.93
53820625--53820661	11	3.5	11	85	7	58	78	0	18	2	0.87
53835423--53835447	3	8.3	3	100	0	50	64	0	0	36	0.94
53837413--53837437	11	2.3	11	100	0	50	60	0	0	40	0.97
53845121--53845180	4	14.8	4	86	10	86	26	1	25	46	1.62
53855121--53855184	32	2.0	32	81	6	76	45	6	6	42	1.54
53856416--53856610	9	20.7	9	71	14	101	60	4	2	33	1.29
53856510--53856581	30	2.4	30	79	11	76	55	2	1	40	1.23
53857276--53857455	30	6.0	28	74	14	130	34	0	5	60	1.20
53857296--53857350	19	2.9	19	86	7	76	36	0	5	58	1.21
53857294--53857356	29	2.2	29	85	5	83	31	0	4	63	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53857276--53857455	10	18.0	10	72	12	104	34	0	5	60	1.20
53857414--53857475	28	2.1	30	82	5	74	33	0	4	61	1.17
53857685--53857721	13	3.0	12	88	7	56	70	2	0	27	1.01
53857686--53857721	19	1.9	18	88	5	54	72	2	0	25	0.98
53861106--53861130	11	2.3	11	100	0	50	52	0	12	36	1.39
53862045--53862083	19	2.1	19	85	9	53	38	0	2	58	1.12
53867792--53867887	40	2.4	40	82	5	122	28	30	25	16	1.97
53868988--53869080	36	2.5	35	80	13	98	44	1	23	31	1.61
53870660--53870693	14	2.4	14	90	0	50	50	11	17	20	1.77
53872523--53872673	64	2.4	63	88	1	221	29	27	19	23	1.98
53872636--53872694	24	2.5	24	100	0	118	27	32	22	18	1.97
53872784--53872889	42	2.5	42	86	3	133	38	16	15	30	1.89
53875391--53875427	17	2.2	17	90	4	58	64	27	0	8	1.21
53880116--53880170	15	3.8	15	76	4	60	38	1	0	60	1.08
53880109--53880170	22	2.9	21	78	4	70	35	1	0	62	1.05
53880870--53880915	24	1.9	24	91	8	76	41	6	8	43	1.61
53885292--53885343	24	2.2	24	89	0	77	36	5	7	50	1.55
53885303--53885355	24	2.2	24	86	6	72	37	5	11	45	1.64
53887658--53887694	2	18.5	2	100	0	74	51	0	0	48	1.00
53888642--53888731	45	2.0	45	91	0	144	46	5	33	14	1.68
53892232--53892296	25	2.8	21	76	19	67	26	4	1	67	1.18
53892633--53892661	14	2.1	14	100	0	58	48	6	0	44	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53894440--53894473	15	2.3	15	89	0	50	0	17	20	61	1.34
53897050--53897359	41	7.6	41	92	0	485	22	28	20	28	1.99
53899579--53899666	38	2.3	38	96	0	158	30	32	11	25	1.91
53905627--53905783	79	2.0	79	98	0	305	33	26	16	22	1.95
53907939--53907972	5	6.8	5	100	0	68	0	17	0	82	0.67
53909336--53909434	45	2.2	45	81	3	128	48	4	29	18	1.66
53912994--53913031	19	2.0	19	94	0	67	47	7	10	34	1.67
53914826--53914869	23	1.9	23	95	0	79	25	27	13	34	1.93
53916731--53916774	18	2.3	20	71	28	51	61	0	0	38	0.96
53916780--53916817	19	2.0	19	94	0	67	47	7	10	34	1.67
53920472--53920650	91	2.0	90	88	3	270	35	13	20	30	1.91
53925689--53925742	27	1.9	27	85	7	72	33	5	18	42	1.73
53948486--53948555	27	2.6	27	80	8	79	51	20	2	25	1.61
53951422--53951454	8	4.1	8	100	0	66	60	24	15	0	1.35
53952255--53952327	24	3.0	24	84	7	103	38	2	45	13	1.58
53955394--53955461	21	3.2	21	77	8	75	27	22	8	41	1.83
53955396--53955516	42	2.9	41	81	3	125	22	25	12	39	1.89
53959436--53959506	26	2.7	26	80	0	88	23	33	22	19	1.97
53960961--53961006	23	2.0	23	91	0	74	30	34	13	21	1.91
53967794--53968001	91	2.3	91	88	0	301	29	22	13	34	1.93
53969678--53969767	45	2.0	45	91	0	144	46	5	33	14	1.68
53973327--53973391	25	2.8	21	76	19	67	26	4	1	67	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53979585--53979677	44	2.1	44	92	6	152	31	4	30	34	1.77
53979817--53980175	120	3.0	119	94	1	621	52	4	1	41	1.31
53980150--53980211	21	3.0	21	71	17	67	54	6	1	37	1.36
53990217--53990269	24	2.2	24	96	0	97	41	24	15	18	1.89
53990259--53990287	14	2.1	14	100	0	58	34	37	13	13	1.85
53997613--53997664	18	3.1	17	73	21	56	28	0	1	69	0.99
53997615--53997674	15	3.9	14	73	26	50	28	0	1	70	0.97
53999869--53999894	13	2.0	13	100	0	52	30	7	15	46	1.74
53999928--53999967	19	2.0	20	85	4	55	25	20	7	47	1.75
53999982--54000028	23	2.0	23	100	0	94	42	17	6	34	1.74
54004766--54004808	19	2.3	19	95	0	77	25	4	25	44	1.73
54006124--54006167	23	1.9	23	86	9	63	54	27	0	18	1.44
54013283--54013363	25	3.2	25	71	0	81	17	25	20	35	1.95
54018002--54018054	22	2.4	22	84	12	65	35	11	20	32	1.88
54036092--54036153	29	2.1	28	82	11	72	56	17	6	19	1.62
54046845--54046880	14	2.4	15	86	13	56	2	5	19	72	1.17
54049453--54049540	34	2.6	34	81	12	101	35	19	20	25	1.96
54052651--54052851	41	4.9	41	91	0	285	27	19	24	27	1.99
54061701--54061738	19	2.0	19	89	0	58	47	10	10	31	1.72
54065433--54065611	91	2.0	90	87	3	261	35	14	20	29	1.92
54069498--54069522	2	12.5	2	100	0	50	52	48	0	0	1.00
54071797--54072020	27	8.4	27	83	4	258	44	20	15	19	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54071809--54072020	53	4.0	54	83	3	277	44	20	15	18	1.86
54071807--54072018	80	2.6	79	81	6	259	44	21	15	19	1.87
54074831--54074865	2	17.5	2	93	0	61	51	45	0	2	1.16
54080132--54080164	11	3.1	11	82	8	50	60	12	18	9	1.57
54088944--54088985	17	2.6	16	85	11	50	28	0	0	71	0.86
54090997--54091056	21	2.9	21	77	18	63	40	1	1	56	1.19
54091048--54091082	17	1.9	19	88	11	56	48	2	0	48	1.16
54100088--54100140	21	2.5	21	90	0	79	32	35	9	22	1.86
54103512--54103555	24	1.9	24	86	9	65	36	11	0	52	1.38
54107033--54107090	25	2.4	24	82	5	71	41	18	20	18	1.91
54109322--54109379	29	2.0	30	89	3	91	13	5	24	56	1.57
54110625--54110755	13	10.2	13	77	9	126	37	4	5	52	1.45
54110625--54110755	40	3.4	39	87	7	171	37	4	5	52	1.45
54110625--54110746	27	4.8	26	79	10	108	37	4	4	52	1.45
54110791--54110824	15	2.3	15	100	0	68	41	11	5	41	1.66
54110827--54110862	14	2.6	14	95	0	63	19	11	2	66	1.35
54110514--54111137	328	1.9	327	95	0	1122	37	6	5	51	1.50
54110988--54111083	40	2.4	40	89	3	140	37	3	4	55	1.35
54110953--54111074	27	4.8	26	78	10	99	37	4	4	54	1.39
54110953--54111074	13	9.5	13	77	10	117	37	4	4	54	1.39
54113537--54113582	9	5.1	9	91	0	65	34	13	39	13	1.83
54113967--54114038	19	3.6	19	72	20	65	19	6	16	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54113985--54114019	12	3.0	12	87	8	54	14	8	14	62	1.53
54113974--54114048	22	3.5	22	72	20	77	18	5	16	60	1.54
54115405--54115553	21	7.0	21	72	13	99	63	8	8	20	1.48
54115345--54115553	42	4.9	42	81	11	189	65	10	6	18	1.44
54123825--54123873	24	2.0	24	100	0	98	46	4	12	36	1.60
54123833--54123884	24	2.2	24	86	3	70	50	7	11	30	1.67
54125774--54125827	27	1.9	27	85	7	72	20	11	7	61	1.53
54128244--54128291	3	16.3	3	84	4	53	58	0	41	0	0.98
54132327--54132391	6	10.8	6	80	6	69	50	15	6	27	1.67
54132408--54132474	6	11.2	6	83	0	80	58	14	7	19	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218