genome.fa.s23.2.7.7.80.10.50.1000.213.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  213  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63406612--63406668	18	3.2	18	92	0	96	28	22	17	31	1.97
63416071--63416126	29	1.9	29	88	0	85	21	21	8	48	1.77
63421098--63421187	42	2.2	41	80	7	94	18	28	30	22	1.97
63425320--63425375	29	1.9	29	88	0	85	21	21	8	48	1.77
63431263--63431303	21	2.0	21	90	0	64	19	29	21	29	1.98
63436175--63436242	34	2.0	34	85	0	91	23	25	5	45	1.75
63445039--63445088	25	2.0	25	84	3	66	44	2	2	52	1.24
63447027--63447106	26	3.1	26	80	3	81	17	18	35	28	1.94
63453696--63453799	41	2.7	39	82	5	122	33	25	16	24	1.96
63453668--63453799	41	3.4	39	73	11	117	33	24	17	25	1.96
63454659--63454706	12	4.1	12	76	12	55	0	29	0	70	0.87
63454660--63454702	15	2.8	15	82	3	50	0	23	0	76	0.78
63456979--63457037	30	1.9	30	82	3	73	40	0	38	20	1.53
63457126--63457184	30	2.0	30	83	3	75	47	0	32	20	1.50
63461848--63461892	17	2.6	17	83	13	56	53	6	0	40	1.27
63464444--63464521	11	7.4	11	77	8	54	37	3	0	58	1.16
63464423--63464529	41	2.6	40	84	10	144	33	2	0	63	1.09
63468131--63468178	21	2.3	21	80	13	64	45	2	2	50	1.25
63469442--63469475	10	3.4	10	87	0	50	50	0	8	41	1.34
63489782--63489843	31	2.0	31	87	6	90	29	8	14	48	1.72
63492037--63492062	7	3.7	7	100	0	52	11	0	0	88	0.52
63498936--63499015	29	2.6	30	82	5	90	45	16	8	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63499143--63499183	18	2.3	18	86	0	55	63	0	2	34	1.08
63503378--63503418	21	1.9	22	90	5	66	29	0	0	70	0.87
63503360--63503432	21	3.5	22	74	10	64	34	0	1	64	1.02
63503513--63503553	18	2.3	18	86	0	55	63	4	2	29	1.28
63503995--63504050	23	2.3	25	90	9	98	37	5	3	53	1.41
63503997--63504050	24	2.3	24	96	3	101	37	5	3	53	1.42
63504665--63504696	15	2.1	16	88	11	50	34	0	0	65	0.93
63511393--63511468	31	2.5	31	100	0	152	44	9	23	22	1.81
63513221--63513837	203	3.0	201	83	5	760	23	14	24	36	1.93
63529683--63529731	21	2.3	22	79	13	57	34	0	2	63	1.06
63533324--63533361	13	3.0	13	88	3	51	18	10	15	55	1.68
63533325--63533363	12	3.2	12	88	3	51	17	10	12	58	1.61
63542329--63542652	177	1.8	179	86	4	474	40	17	17	25	1.91
63542517--63542803	148	1.9	150	90	3	454	42	15	18	24	1.88
63544156--63544750	145	4.1	145	81	5	623	38	22	13	25	1.90
63555857--63555910	4	13.5	4	96	0	81	44	24	5	25	1.75
63558236--63558356	60	2.0	60	85	3	163	37	4	17	41	1.69
63559630--63559667	19	2.0	19	89	0	58	73	2	0	23	0.95
63568770--63568798	12	2.4	12	100	0	58	72	20	0	6	1.07
63571897--63571941	3	15.3	3	88	4	65	2	35	2	60	1.22
63573492--63573804	132	2.4	130	85	3	400	28	14	19	38	1.90
63575402--63575427	7	3.7	7	100	0	52	73	0	0	26	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63575814--63575875	27	2.3	26	78	13	72	43	0	3	53	1.17
63577366--63577788	159	2.7	159	86	1	582	24	9	19	47	1.78
63585319--63585358	20	2.0	21	85	5	55	52	2	0	45	1.14
63585306--63585366	26	2.3	26	75	13	63	45	1	0	52	1.10
63600915--63600969	24	2.3	23	78	12	56	49	1	5	43	1.36
63601598--63601641	22	2.0	22	100	0	88	22	18	9	50	1.75
63609161--63609224	17	3.5	17	69	19	56	29	9	14	46	1.75
63609145--63609223	39	2.0	39	100	0	158	27	10	15	46	1.77
63614238--63614316	39	2.0	39	95	0	140	25	10	16	48	1.77
63620290--63620331	22	1.9	22	85	0	57	16	14	14	54	1.71
63623416--63623504	38	2.3	38	86	5	115	38	0	6	55	1.27
63629785--63629819	3	11.7	3	93	0	61	65	0	2	31	1.07
63631398--63631688	44	6.8	43	71	12	145	27	21	21	29	1.99
63633109--63633169	15	4.1	15	73	10	54	24	3	8	63	1.37
63639210--63639249	21	1.9	21	85	10	55	22	7	5	65	1.38
63654757--63654919	83	2.0	83	98	0	317	39	22	12	25	1.90
63655166--63655338	60	2.7	62	85	7	215	51	15	16	16	1.77
63661230--63661331	51	2.0	51	100	0	204	27	13	15	43	1.85
63665115--63665139	7	3.6	7	100	0	50	52	0	0	48	1.00
63666892--63666937	7	6.3	7	80	9	56	39	0	2	58	1.10
63671698--63671739	20	2.2	19	87	8	59	64	0	33	2	1.07
63672155--63672196	18	2.3	19	91	4	68	71	0	7	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63672835--63672877	14	3.1	14	86	10	61	34	2	0	62	1.08
63675078--63675154	40	1.9	40	89	0	118	15	7	24	51	1.69
63676740--63676774	17	2.1	17	94	0	61	40	11	0	48	1.39
63686597--63686637	21	2.0	21	90	0	64	19	29	21	29	1.98
63689880--63690121	121	2.0	121	98	0	466	34	17	23	23	1.96
63691019--63691052	9	3.8	9	92	0	59	41	11	23	23	1.87
63707801--63707888	45	2.0	45	84	4	115	42	18	15	23	1.89
63708092--63708176	40	2.1	41	86	2	118	41	21	7	30	1.79
63708092--63708159	21	3.3	21	68	15	61	38	20	8	32	1.84
63708982--63709038	30	1.9	29	86	10	80	49	5	0	45	1.24
63709131--63709174	16	2.6	16	79	10	52	47	4	0	47	1.22
63711591--63711630	21	1.9	21	84	0	53	7	17	7	67	1.38
63722812--63722857	23	2.0	23	100	0	92	30	8	26	34	1.86
63724515--63724539	5	5.0	5	100	0	50	40	0	0	60	0.97
63728511--63728763	125	2.0	125	94	0	443	39	9	30	20	1.85
63730510--63730792	144	2.0	141	95	2	514	28	25	12	33	1.92
63748572--63749591	444	2.3	450	81	6	1113	32	11	15	41	1.82
63749852--63750360	189	2.7	189	91	0	820	30	20	18	30	1.96
63757190--63757239	26	1.9	26	87	0	73	10	20	24	46	1.81
63759196--63759253	9	6.4	9	89	0	89	43	22	8	25	1.82
63759261--63759323	17	3.5	17	69	12	54	49	14	3	33	1.59
63759459--63759575	39	3.0	39	88	1	173	19	2	25	52	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63764946--63765148	42	4.9	42	82	5	232	30	20	23	26	1.99
63764946--63765148	85	2.4	82	85	4	255	30	20	23	26	1.99
63771056--63771552	9	58.1	9	68	18	185	31	1	18	47	1.59
63771114--63771315	16	12.8	16	69	22	117	31	0	19	49	1.48
63771166--63771221	28	2.0	28	96	0	103	30	0	17	51	1.46
63771207--63771324	62	1.9	61	84	5	157	28	0	16	54	1.43
63771113--63771323	71	3.1	71	80	8	217	30	0	19	49	1.48
63771113--63771549	34	12.5	34	66	18	186	31	1	18	48	1.58
63771296--63771394	20	5.1	20	69	8	62	30	2	13	54	1.50
63771382--63771549	16	9.9	17	69	17	75	31	2	19	45	1.65
63771428--63771511	40	2.1	39	84	2	105	26	3	20	50	1.64
63771469--63771539	25	2.9	25	82	2	72	28	2	21	47	1.64
63920320--63920360	21	2.0	21	95	0	73	19	26	21	31	1.97
63928182--63928246	27	2.4	27	89	5	105	35	0	0	64	0.94
63928186--63928256	26	2.7	27	84	4	74	29	0	4	66	1.11
63932442--63932526	29	3.2	29	78	21	107	56	0	8	35	1.29
63932470--63932521	20	2.5	21	81	9	61	55	0	7	36	1.29
63932457--63932526	26	2.9	23	74	17	79	55	0	7	37	1.27
63937801--63937841	21	2.0	21	81	18	50	31	19	26	21	1.97
63956862--63957101	125	1.9	125	94	1	428	39	9	30	21	1.85
63958768--63958812	15	3.1	15	84	12	58	37	0	2	60	1.09
63960440--63960507	34	2.0	34	100	0	136	41	5	20	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63967192--63967844	189	3.5	188	84	3	731	33	19	16	30	1.95
63967192--63967876	378	1.8	378	81	3	851	32	19	16	30	1.95
63977799--63978279	138	3.5	138	98	0	935	27	27	12	32	1.93
63979472--63979522	22	2.3	22	74	12	52	60	11	5	21	1.52
63983052--63983304	125	2.0	125	96	0	470	39	9	29	20	1.84
64006190--64006394	42	4.9	42	86	3	270	32	20	21	25	1.97
64006181--64006416	126	1.9	129	85	6	338	33	21	20	25	1.97
64006828--64006900	21	3.5	21	90	0	110	6	38	16	38	1.75
64006868--64006916	21	2.3	21	89	0	71	6	46	16	30	1.71
64006828--64006916	42	2.1	42	80	0	97	6	41	15	35	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218