genome.fa.s23.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  146  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44511749--44511805	27	2.1	27	100	0	114	36	3	14	45	1.61
44512984--44513110	42	3.0	42	81	5	141	20	22	15	40	1.90
44513054--44513115	21	3.0	21	80	0	79	16	25	17	40	1.90
44513054--44513141	42	2.1	42	80	0	95	15	26	20	37	1.93
44525478--44525577	50	2.0	50	98	0	191	40	16	15	29	1.88
44530213--44530254	22	1.9	22	95	0	75	35	9	16	38	1.81
44530447--44530491	23	2.0	22	83	12	56	40	11	2	46	1.52
44536212--44536290	37	2.1	37	88	4	115	25	30	18	25	1.98
44536409--44537023	47	13.1	47	94	0	1025	28	29	8	32	1.88
44543827--44544123	65	4.6	65	77	8	264	42	11	16	29	1.84
44548042--44548084	22	2.0	22	81	9	52	39	4	2	53	1.34
44550440--44550612	25	7.2	23	69	15	75	42	17	12	27	1.86
44550467--44551074	23	26.0	22	70	14	281	39	17	14	28	1.89
44550426--44551075	188	3.4	188	93	2	1072	39	17	14	28	1.89
44550426--44551075	93	6.9	93	92	2	1050	39	17	14	28	1.89
44551824--44551921	28	3.5	28	78	0	106	31	29	10	28	1.90
44557778--44558360	23	25.1	23	75	11	476	40	17	14	27	1.88
44557778--44558338	93	6.0	93	95	0	998	40	17	13	27	1.88
44559085--44559207	28	4.4	28	88	0	174	31	27	11	29	1.91
44559917--44560049	50	2.7	50	89	0	185	27	22	27	22	1.99
44560311--44560341	16	1.9	16	93	0	53	51	6	22	19	1.69
44560312--44560357	20	2.3	20	84	0	65	56	2	23	17	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44568673--44568717	23	2.0	23	95	0	81	42	11	4	42	1.60
44568674--44568723	23	2.2	23	88	0	73	40	12	8	40	1.72
44594363--44595457	367	3.0	366	94	0	1913	21	19	23	34	1.96
44603230--44603291	26	2.4	26	88	0	88	33	11	16	38	1.84
44611085--44611129	23	2.0	21	84	16	56	26	26	20	26	1.99
44616471--44616534	25	2.6	25	84	0	101	23	12	31	32	1.92
44619854--44619919	33	2.0	33	84	0	87	24	21	27	27	1.99
44620021--44620089	26	2.7	26	86	0	93	34	20	23	21	1.96
44622448--44622525	38	2.1	38	97	0	147	48	7	15	28	1.72
44622949--44622973	13	1.9	13	100	0	50	44	8	16	32	1.76
44623357--44623407	20	2.7	19	80	17	61	43	0	1	54	1.11
44624421--44624653	35	6.8	35	85	5	316	18	23	18	40	1.91
44624421--44624653	67	3.4	68	87	7	312	18	23	18	40	1.91
44624421--44624659	102	2.3	102	94	0	415	18	23	17	40	1.91
44627460--44627503	20	2.1	22	84	16	58	13	9	9	68	1.40
44632369--44632423	28	2.0	27	82	10	67	38	0	12	49	1.41
44637407--44637431	7	3.6	7	100	0	50	28	24	0	48	1.52
44644938--44644985	23	2.1	22	81	14	53	35	14	2	47	1.56
44645126--44645308	51	3.6	50	71	5	154	31	27	17	24	1.97
44647920--44648001	42	2.0	42	82	4	103	30	23	14	31	1.94
44650200--44650225	11	2.4	11	100	0	52	76	7	7	7	1.15
44653348--44653444	12	8.4	12	70	19	57	41	3	1	54	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44653351--44653474	32	3.8	32	73	17	101	41	3	1	53	1.27
44653350--44653484	68	2.0	69	91	1	218	42	2	2	51	1.32
44653420--44653475	16	3.4	16	73	11	51	46	1	1	50	1.22
44654370--44654404	14	2.6	13	86	8	52	28	0	0	71	0.86
44665981--44666017	17	2.2	17	90	0	56	24	16	8	51	1.71
44668611--44668642	15	2.1	15	100	0	64	31	12	31	25	1.92
44670488--44670631	27	5.3	27	84	0	180	42	23	15	18	1.88
44672201--44672354	32	4.8	32	79	1	166	22	19	18	39	1.92
44672201--44672354	64	2.4	64	87	2	211	22	19	18	39	1.92
44672360--44672421	22	2.8	22	73	11	56	17	19	17	45	1.86
44681295--44681339	18	2.5	18	89	7	65	35	13	15	35	1.87
44681458--44681594	69	2.0	69	89	0	211	19	13	37	28	1.90
44681562--44681600	18	2.0	20	85	14	55	12	15	46	25	1.81
44681573--44681615	18	2.4	18	84	7	52	13	16	46	23	1.83
44687310--44687338	9	3.3	9	90	9	51	65	0	24	10	1.23
44689243--44689282	8	4.8	8	82	11	53	55	2	7	35	1.42
44689251--44689290	18	2.2	18	95	0	71	60	2	5	32	1.32
44691855--44691971	23	4.9	23	77	7	90	25	14	10	49	1.75
44691864--44691963	12	8.2	12	71	6	76	28	14	12	46	1.79
44691892--44691941	26	1.9	26	83	0	64	28	14	12	46	1.79
44699064--44699116	22	2.5	21	84	9	63	26	37	0	35	1.57
44702211--44702255	23	2.0	22	87	12	65	22	15	11	51	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44702213--44702311	12	8.2	12	70	12	69	27	15	12	45	1.81
44702240--44702289	26	1.9	26	83	0	64	26	14	12	48	1.78
44702271--44702316	23	2.0	24	91	4	76	30	17	10	41	1.84
44711554--44711758	63	3.3	62	75	3	189	25	21	25	27	1.99
44713001--44713041	16	2.6	16	88	3	57	24	17	2	56	1.53
44713430--44713519	28	3.2	28	62	20	69	45	11	1	42	1.47
44713423--44713536	57	2.0	57	98	0	219	47	10	0	41	1.44
44713973--44714078	39	2.7	40	75	8	101	42	18	18	19	1.90
44713973--44714106	40	3.4	39	73	10	119	41	18	20	18	1.90
44714182--44714246	33	2.0	33	93	0	112	15	18	33	32	1.92
44714214--44714458	41	6.0	41	80	1	231	20	18	26	34	1.96
44714630--44714689	7	8.7	7	79	3	59	15	0	40	45	1.46
44714761--44714801	21	2.0	21	85	0	55	21	0	24	53	1.46
44714810--44714864	14	3.9	14	75	2	56	14	0	34	50	1.43
44716304--44716383	31	2.6	31	95	0	142	18	15	21	45	1.86
44717212--44717239	12	2.3	12	100	0	56	32	7	10	50	1.64
44717359--44717393	10	3.5	10	100	0	70	17	0	8	74	1.06
44718583--44718676	43	2.2	43	86	0	125	24	15	30	28	1.96
44722957--44723230	41	6.7	41	88	3	390	16	20	30	32	1.95
44723571--44723654	35	2.4	36	85	2	107	23	3	27	45	1.69
44723618--44723701	21	4.1	20	70	17	64	26	1	35	36	1.64
44723663--44723706	14	3.1	14	76	3	52	20	0	43	36	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44724067--44724107	21	1.9	22	85	5	57	19	0	39	41	1.52
44724577--44724716	43	3.3	42	85	7	165	27	32	18	21	1.97
44724642--44724758	43	2.7	43	82	2	119	33	26	17	23	1.96
44724852--44724902	16	2.9	17	80	11	50	68	3	0	27	1.07
44724849--44724902	9	6.2	9	75	14	51	68	3	0	27	1.06
44724927--44724964	19	2.0	20	89	5	60	60	5	10	23	1.50
44725056--44725148	21	4.4	21	86	0	132	4	45	17	33	1.68
44725056--44725168	21	5.4	21	85	0	109	5	43	16	34	1.71
44725139--44725284	66	2.2	66	85	7	190	13	30	16	40	1.86
44725159--44725285	66	1.9	66	88	6	195	14	27	18	40	1.89
44725178--44725308	66	2.0	66	86	3	183	12	26	18	41	1.87
44730761--44730865	25	4.2	25	75	11	97	32	1	19	46	1.60
44730772--44731022	9	28.8	9	68	12	139	31	2	20	45	1.65
44731045--44731088	16	2.7	16	96	3	79	38	0	22	38	1.55
44731274--44731883	100	6.1	100	97	0	1121	48	3	7	39	1.50
44731861--44731953	44	2.1	43	86	6	123	48	2	4	45	1.34
44732299--44732372	7	10.6	7	85	0	94	72	10	12	4	1.24
44732286--44732387	21	4.8	21	81	2	96	72	10	10	5	1.27
44732376--44732419	18	2.4	19	84	3	54	56	13	15	13	1.67
44733171--44733195	10	2.5	10	100	0	50	32	8	12	48	1.69
44733695--44734084	198	2.0	198	90	2	622	34	20	16	28	1.95
44734494--44734585	47	2.0	47	82	0	112	47	3	7	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44734573--44734621	19	2.6	19	81	12	66	14	4	2	79	0.97
44734581--44734621	18	2.3	18	91	4	66	12	4	0	82	0.81
44734658--44734684	14	1.9	14	100	0	54	44	7	0	48	1.31
44734910--44735013	7	14.9	7	80	4	102	29	47	0	22	1.58
44735069--44735136	7	9.7	7	85	0	91	33	48	0	17	1.48
44735069--44735136	21	3.2	21	93	0	118	33	48	0	17	1.48
44735538--44735932	188	2.1	188	90	0	619	30	21	15	32	1.94
44735738--44736321	114	5.1	113	73	11	460	30	20	15	33	1.94
44735722--44736316	227	2.6	226	87	3	822	29	20	16	33	1.95
44741498--44741551	16	3.4	16	92	0	81	35	0	33	31	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218