genome.fa.s23.2.7.7.80.10.50.1000.210.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  210  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62452667--62452730	28	2.3	28	81	7	76	26	4	3	65	1.27
62457110--62457168	21	3.0	21	75	12	61	55	0	0	44	0.99
62457131--62457191	25	2.4	26	81	8	72	57	1	0	40	1.08
62460073--62460097	5	5.0	5	100	0	50	20	40	20	20	1.92
62461027--62461056	15	1.9	16	93	6	53	63	0	0	36	0.95
62461687--62461720	15	2.4	14	90	5	50	70	0	0	29	0.87
62468195--62468256	30	2.1	30	84	0	79	46	9	4	38	1.58
62473836--62473889	24	2.2	24	86	0	72	18	22	50	9	1.75
62473953--62474006	23	2.3	23	81	6	65	12	9	25	51	1.70
62477621--62477679	29	2.0	29	90	0	91	25	6	10	57	1.56
62480518--62480588	29	2.4	30	76	2	72	45	7	5	42	1.55
62481121--62481146	11	2.4	11	100	0	52	26	0	0	73	0.84
62488497--62488567	34	2.0	36	91	5	119	32	11	5	50	1.61
62494849--62494893	19	2.5	19	82	7	58	53	0	0	46	1.00
62494865--62494896	14	2.2	15	94	5	57	53	0	0	46	1.00
62496173--62496197	8	3.1	8	100	0	50	0	0	76	24	0.80
62496569--62496654	8	10.5	8	80	13	70	68	0	0	31	0.90
62499473--62499510	19	1.9	19	89	5	58	44	0	0	55	0.99
62505821--62505896	38	2.0	38	100	0	152	52	2	10	34	1.50
62507942--62507977	19	1.9	19	94	5	65	55	2	0	41	1.14
62508348--62508443	45	2.2	45	98	1	185	46	9	10	33	1.70
62512576--62512607	12	2.6	13	85	14	50	34	0	25	40	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62513110--62513143	11	3.2	11	83	8	52	76	0	2	20	0.92
62513430--62513487	25	2.3	25	88	5	82	15	24	22	37	1.93
62514615--62514752	19	7.6	19	72	12	128	39	10	1	49	1.46
62514620--62514752	37	3.7	37	84	9	202	40	10	1	47	1.47
62514623--62514764	71	2.0	71	100	0	284	42	9	2	45	1.52
62514966--62515029	18	3.5	18	82	4	92	40	12	0	46	1.42
62514952--62515045	37	2.5	37	100	0	188	38	12	0	48	1.41
62514952--62515045	19	5.1	19	79	5	120	38	12	0	48	1.41
62515042--62515088	18	2.6	19	83	6	53	53	0	10	36	1.36
62515057--62515097	19	2.1	19	86	4	55	53	0	9	36	1.34
62515298--62515335	18	2.1	18	90	9	60	55	0	5	39	1.23
62515298--62515336	19	2.1	18	90	4	60	56	0	5	38	1.22
62515410--62515488	27	2.9	27	92	0	131	16	32	21	29	1.95
62515789--62515848	31	2.0	31	83	9	79	40	5	5	50	1.46
62519934--62519965	6	5.3	6	92	0	55	50	34	15	0	1.45
62538315--62538353	18	2.3	17	86	8	53	20	7	2	69	1.26
62539995--62540035	3	13.7	3	100	0	82	65	0	0	34	0.93
62542393--62542441	21	2.3	21	89	6	73	61	2	0	36	1.08
62550655--62550707	5	10.6	5	85	0	70	33	1	1	62	1.17
62550894--62550940	22	2.1	22	85	14	62	68	8	23	0	1.17
62551391--62551418	9	3.1	9	100	0	56	21	0	0	78	0.75
62551975--62552043	23	3.0	24	89	10	110	20	21	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62567531--62567577	20	2.3	20	82	10	60	68	2	0	29	1.02
62568394--62568423	3	10.0	3	100	0	60	66	0	0	33	0.92
62569395--62569435	20	2.0	20	86	9	57	51	9	2	36	1.48
62575485--62575514	15	2.0	15	100	0	60	33	13	20	33	1.91
62577613--62577679	33	2.0	33	88	0	98	28	11	11	47	1.76
62578232--62578422	97	2.0	97	94	2	339	10	24	17	47	1.80
62580188--62580212	7	3.6	7	100	0	50	12	12	0	76	1.04
62593649--62593694	22	2.0	24	83	8	60	41	2	6	50	1.40
62594385--62594436	18	3.0	17	76	18	54	50	5	9	34	1.59
62600915--62600948	16	2.1	16	88	0	50	58	2	0	38	1.13
62606482--62606602	60	2.0	60	98	0	233	32	15	20	31	1.94
62610751--62610791	22	1.9	22	85	5	57	34	9	9	46	1.70
62612837--62612896	18	3.2	18	77	13	50	53	3	1	41	1.27
62613536--62613571	19	1.9	19	88	5	56	50	5	5	38	1.49
62615716--62615856	73	1.9	73	83	8	180	43	19	18	18	1.89
62616840--62616875	9	3.9	9	92	3	54	75	8	2	13	1.15
62617117--62617201	26	3.3	27	63	15	70	55	9	16	18	1.68
62622846--62622901	19	2.9	18	82	17	60	35	0	0	64	0.94
62622853--62622905	20	2.8	20	80	13	58	33	0	1	64	1.05
62628643--62628667	3	8.3	3	100	0	50	32	32	0	36	1.58
62628708--62628739	4	8.0	4	100	0	64	25	0	25	50	1.50
62630604--62630629	10	2.6	10	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62630714--62630752	19	2.1	19	100	0	78	15	38	15	30	1.88
62633990--62634115	61	2.1	61	100	0	252	35	23	9	31	1.87
62637207--62637404	91	2.2	93	94	2	357	44	3	6	46	1.43
62637112--62637535	212	2.0	214	93	2	739	45	3	5	45	1.44
62637498--62637577	29	2.8	29	78	10	94	51	0	1	47	1.08
62637493--62637537	18	2.7	17	77	22	51	55	0	0	44	0.99
62637297--62637786	122	4.0	122	93	0	784	46	3	5	43	1.45
62637544--62637751	58	3.5	58	67	20	153	47	4	5	42	1.48
62638507--62638567	21	3.0	21	85	2	88	34	27	22	14	1.94
62638572--62638616	23	2.0	23	86	0	63	40	15	15	28	1.88
62639665--62639731	3	22.3	3	84	0	89	59	1	0	38	1.06
62639851--62639888	18	2.0	19	90	10	60	47	5	0	47	1.24
62639851--62639897	19	2.5	20	80	16	55	44	4	2	48	1.34
62640375--62640421	22	2.1	22	85	14	62	72	0	0	27	0.85
62641304--62641361	30	1.9	30	92	0	98	34	10	5	50	1.59
62643951--62643976	11	2.4	11	100	0	52	50	7	42	0	1.31
62644621--62644669	12	4.1	12	89	0	53	36	0	8	55	1.30
62644635--62644670	3	12.0	3	87	0	54	36	0	2	61	1.11
62645023--62645118	39	2.5	39	80	6	108	20	23	28	27	1.99
62651631--62651656	11	2.4	11	100	0	52	50	7	42	0	1.31
62652301--62652349	12	4.1	12	89	0	53	36	0	8	55	1.30
62652315--62652350	3	12.0	3	87	0	54	36	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62663030--62663111	42	1.9	43	90	2	130	42	20	15	20	1.89
62663390--62663448	31	1.9	30	86	3	82	20	5	32	42	1.74
62663964--62664036	36	2.0	37	84	12	98	43	0	5	50	1.25
62663992--62664039	14	3.4	14	78	18	55	47	0	2	50	1.12
62665189--62665313	41	3.0	41	85	1	151	28	17	20	33	1.96
62665510--62665534	13	1.9	13	100	0	50	24	8	20	48	1.76
62666453--62666490	20	1.9	20	88	0	58	57	0	13	28	1.36
62666621--62666775	51	3.0	52	83	4	199	34	13	14	36	1.86
62691434--62691536	51	2.0	51	92	0	170	33	13	22	30	1.92
62691519--62691552	16	2.1	16	100	0	68	23	26	5	44	1.76
62691468--62691603	67	2.0	67	92	0	227	30	18	18	32	1.95
62695899--62695931	12	2.9	12	86	13	52	0	36	6	57	1.23
62697527--62697674	10	15.3	10	66	16	55	35	3	2	58	1.29
62697527--62697579	19	2.7	20	82	2	63	32	3	1	62	1.24
62697527--62697695	9	17.4	9	67	17	81	34	3	2	59	1.30
62711203--62711267	31	2.1	30	85	2	85	49	3	21	26	1.64
62712730--62712982	88	2.9	87	80	5	237	36	18	7	37	1.80
62712797--62712985	88	2.2	87	87	9	280	36	19	9	34	1.84
62713016--62713060	20	2.3	20	84	3	65	64	0	2	33	1.06
62713407--62713477	10	7.5	10	71	9	51	36	1	0	61	1.05
62713398--62713477	19	3.7	20	73	22	54	38	1	0	60	1.05
62713443--62713483	9	4.3	9	85	11	55	39	0	0	60	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62713434--62713483	20	2.6	19	87	3	64	38	0	0	62	0.96
62713440--62713478	11	3.9	10	90	10	53	43	0	0	56	0.99
62713554--62713723	93	1.9	90	90	3	268	28	11	22	37	1.90
62719648--62719842	89	2.2	86	84	7	268	36	19	8	35	1.83
62719943--62719998	27	2.0	28	83	10	71	62	3	3	30	1.29
62720860--62720902	3	14.0	3	95	4	77	67	0	0	32	0.91
62720861--62720899	19	2.1	19	100	0	78	69	0	0	30	0.89
62720860--62720903	22	2.0	22	100	0	88	68	0	0	31	0.90
62721486--62721519	17	2.0	17	94	0	59	44	50	0	5	1.26
62726124--62726157	17	2.0	17	94	0	59	44	50	0	5	1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218