genome.fa.s23.2.7.7.80.10.50.1000.108.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  108  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31376491--31376535	24	1.9	23	86	4	63	17	44	2	35	1.62
31417670--31417729	30	2.0	30	87	6	86	46	11	8	33	1.70
31424142--31424187	21	2.3	20	78	14	51	45	17	6	30	1.73
31430334--31430702	103	3.6	103	91	0	578	32	28	19	18	1.96
31431950--31431988	7	5.4	7	96	3	69	12	12	0	74	1.08
31433733--31433775	13	3.7	12	88	11	63	16	2	0	81	0.79
31436554--31436609	25	2.4	22	78	16	67	21	14	48	16	1.81
31436560--31436613	25	2.2	25	93	0	90	22	12	48	16	1.80
31436730--31436775	24	1.9	24	90	0	74	32	4	36	26	1.76
31437000--31437031	16	2.0	16	93	0	55	31	37	9	21	1.85
31457069--31457113	24	1.9	23	86	4	63	17	44	2	35	1.62
31469766--31469823	28	2.0	28	90	3	89	39	29	13	17	1.88
31508095--31508149	7	7.9	7	97	0	101	14	12	1	70	1.24
31512714--31512767	25	2.2	25	89	0	81	22	11	48	18	1.79
31513129--31513160	16	2.0	16	93	0	55	31	37	9	21	1.85
31514260--31514338	27	2.9	27	90	0	131	43	21	16	18	1.88
31519957--31520055	49	2.0	49	100	0	198	26	20	8	45	1.78
31521244--31521303	27	2.2	27	85	5	77	48	18	13	20	1.81
31527623--31528934	652	2.0	652	91	0	2135	30	26	15	27	1.96
31539020--31539092	20	3.7	19	80	14	85	20	24	1	53	1.54
31556342--31556535	27	7.2	27	87	1	273	40	25	17	15	1.90
31581009--31581201	50	3.7	50	77	6	190	23	28	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31587259--31587296	3	12.7	3	94	0	67	36	0	28	34	1.58
31588428--31588498	9	7.3	9	75	12	61	53	1	1	43	1.18
31588434--31588494	20	3.0	20	80	7	61	49	1	1	47	1.21
31588417--31588498	30	2.7	30	88	3	112	52	1	3	42	1.26
31592380--31592444	18	3.8	18	86	8	91	44	0	1	53	1.09
31592672--31592709	11	3.6	11	82	10	53	36	0	2	60	1.11
31592718--31592759	16	2.4	18	84	11	61	14	9	0	76	1.02
31597855--31597952	39	2.5	39	81	4	110	38	5	9	46	1.58
31603834--31603895	30	2.1	30	96	0	115	48	12	4	33	1.63
31609877--31609905	14	2.1	14	100	0	58	20	34	6	37	1.80
31614617--31614739	50	2.5	50	83	0	156	33	24	17	25	1.96
31626925--31627210	146	2.0	144	88	2	430	32	19	9	38	1.84
31646697--31646992	39	7.6	39	85	3	391	44	20	3	31	1.68
31646703--31646992	117	2.5	117	90	0	465	44	21	3	30	1.68
31647647--31647678	13	2.5	13	95	5	57	40	25	6	28	1.79
31652218--31652257	18	2.2	18	100	0	80	57	22	0	20	1.41
31653898--31654023	57	2.2	57	83	8	159	46	11	18	23	1.82
31654236--31654285	18	2.8	18	84	6	57	32	12	8	48	1.69
31654268--31654299	15	2.2	15	94	5	57	37	3	6	53	1.42
31658588--31658630	21	2.0	23	81	9	54	44	11	11	32	1.77
31661521--31661644	57	2.2	58	85	8	175	49	15	15	20	1.80
31661864--31661919	15	3.4	16	83	16	71	39	5	5	50	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31661864--31661921	18	3.5	17	84	13	77	39	5	5	50	1.47
31663533--31663835	40	7.6	40	89	2	396	26	28	20	24	1.99
31671094--31671396	40	7.6	40	89	2	396	26	28	20	24	1.99
31674657--31674720	23	2.8	23	88	4	85	45	14	14	26	1.82
31674662--31674729	23	3.0	22	87	6	84	50	11	11	26	1.73
31674755--31674788	16	2.1	16	89	10	52	44	0	17	38	1.49
31674755--31674792	15	2.4	17	83	16	55	44	0	18	36	1.50
31681252--31681323	36	2.0	36	94	0	126	30	13	33	22	1.93
31689884--31689912	3	9.7	3	100	0	58	31	0	0	68	0.89
31693966--31694058	35	2.6	35	83	5	107	18	12	29	39	1.88
31694783--31694830	18	2.6	18	83	6	60	50	2	4	43	1.33
31700128--31700169	22	1.9	22	85	9	59	76	0	9	14	1.02
31712349--31712415	14	4.9	14	76	10	66	41	1	25	31	1.64
31712366--31712409	20	2.2	20	87	0	61	43	2	22	31	1.66
31712350--31712415	7	9.6	7	77	9	55	40	1	25	31	1.65
31713605--31713642	20	1.9	20	88	0	58	21	28	28	21	1.98
31720757--31720805	20	2.4	20	68	3	53	32	0	2	65	1.04
31723729--31723870	31	4.6	31	70	10	119	38	19	13	28	1.90
31738625--31738664	21	1.9	21	84	0	53	45	17	5	32	1.70
31744390--31744457	18	3.7	18	81	15	68	64	0	0	35	0.94
31744882--31744950	35	2.0	35	91	2	113	36	15	10	37	1.82
31752232--31752299	33	2.1	33	91	0	109	32	10	33	23	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31757081--31757110	3	10.0	3	100	0	60	33	0	0	66	0.92
31757408--31757432	13	1.9	13	100	0	50	24	4	16	56	1.57
31758436--31758499	17	3.6	17	74	15	67	26	12	14	46	1.79
31758430--31758498	36	1.9	36	96	0	129	26	11	15	46	1.80
31758692--31758788	48	2.0	49	86	6	135	20	12	22	44	1.85
31763565--31763628	17	3.6	17	72	15	58	28	12	12	46	1.78
31763557--31763627	36	2.0	36	94	0	124	26	12	14	46	1.80
31763556--31763612	19	3.1	19	71	19	66	26	12	15	45	1.82
31779154--31779182	8	3.6	8	100	0	58	75	0	0	24	0.80
31781152--31781194	19	2.2	20	84	12	63	32	18	0	48	1.48
31781267--31781356	44	2.0	45	89	2	137	35	22	18	23	1.96
31783998--31784027	5	6.2	5	96	3	53	0	36	0	63	0.95
31784095--31784124	8	3.8	8	100	0	60	76	0	0	23	0.78
31790023--31790082	29	2.1	29	100	0	120	48	13	3	35	1.59
31794075--31794104	7	4.3	7	91	0	51	13	26	13	46	1.80
31796416--31796477	27	2.3	27	80	0	70	8	16	43	32	1.77
31812839--31813015	50	3.5	50	81	7	205	35	15	11	37	1.84
31813782--31813839	29	2.1	29	87	9	86	70	0	10	18	1.15
31816916--31817034	50	2.3	50	80	5	132	32	15	11	39	1.84
31818686--31818748	26	2.4	26	80	17	69	34	23	7	33	1.84
31821832--31822134	40	7.6	40	89	2	396	24	20	28	26	1.99
31828756--31829058	40	7.6	40	89	2	396	24	20	28	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31832707--31832740	13	2.8	12	86	8	50	55	8	11	23	1.63
31833753--31833866	26	4.4	26	72	4	95	33	22	8	35	1.85
31840143--31840206	31	2.1	31	100	0	128	37	3	9	50	1.51
31846815--31846912	27	3.5	28	86	5	119	32	29	13	24	1.93
31852013--31852038	3	8.7	3	100	0	52	30	0	0	69	0.89
31854242--31854298	19	3.0	19	77	7	62	22	19	0	57	1.40
31856940--31857032	37	2.5	38	84	5	118	30	40	13	15	1.86
31861024--31861076	6	9.0	6	91	4	72	73	16	0	9	1.08
31861024--31861076	18	3.0	18	88	2	81	73	16	0	9	1.08
31871875--31872165	50	5.7	50	89	2	411	25	22	30	20	1.98
31871880--31872197	150	2.1	153	86	3	435	26	22	29	22	1.99
31878729--31879018	50	5.7	50	86	2	346	26	20	30	22	1.99
31884292--31884348	28	2.0	29	86	3	80	31	0	17	50	1.46
31884409--31884478	29	2.5	28	79	4	77	35	5	12	45	1.66
31891475--31891499	10	2.5	10	100	0	50	0	0	8	92	0.40
31902924--31903452	262	2.0	262	98	0	1031	37	8	19	35	1.81
31911248--31911273	13	2.0	13	100	0	52	53	0	7	38	1.30
31916631--31916687	30	1.9	30	85	7	80	47	5	8	38	1.57
31928256--31928315	25	2.4	25	81	13	70	33	16	6	43	1.74
31929237--31929263	14	1.9	14	100	0	54	37	22	25	14	1.93
31929574--31929613	18	2.2	19	90	4	64	7	37	0	55	1.29
31950295--31950631	51	6.7	51	77	9	302	29	15	25	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31950299--31950381	26	3.2	26	65	27	68	30	12	25	32	1.92
31950300--31950635	100	3.3	100	79	11	350	29	14	25	30	1.95
31960840--31960900	30	2.1	30	84	9	81	49	11	6	32	1.65
31966754--31966969	42	5.1	42	79	9	208	32	26	16	24	1.96
31975130--31975422	50	5.8	50	86	0	370	21	29	21	27	1.99
31980184--31980225	21	2.0	21	86	9	59	52	9	19	19	1.72
31981577--31981682	21	5.1	21	69	15	76	16	29	19	33	1.94
31981576--31981743	41	4.1	41	85	0	201	19	27	17	35	1.94
31986286--31986333	23	2.1	23	100	0	96	25	16	20	37	1.93
31991898--31991957	20	2.9	22	70	12	63	30	31	8	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218