genome.fa.s23.2.7.7.80.10.50.1000.184.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  184  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55086781--55086821	21	2.0	21	85	9	57	41	2	2	53	1.27
55087434--55087510	14	5.0	15	71	20	52	42	14	9	33	1.77
55087450--55087489	20	2.0	20	90	0	62	50	12	10	27	1.72
55087438--55087504	34	1.9	35	90	3	109	46	13	8	31	1.74
55090553--55090587	7	5.0	7	96	0	52	37	48	0	14	1.44
55090625--55090683	14	4.2	14	73	0	55	45	32	3	18	1.66
55090630--55090688	28	2.1	28	83	0	73	47	32	3	16	1.64
55092173--55092231	27	2.1	28	87	3	84	33	6	0	59	1.24
55092244--55092307	29	2.2	28	86	8	85	42	7	0	50	1.31
55092235--55092317	29	2.8	29	75	15	82	40	8	0	50	1.33
55092293--55092336	23	1.9	23	86	9	63	29	6	2	61	1.34
55093603--55093632	13	2.3	13	94	0	51	33	3	13	50	1.58
55093726--55094018	50	5.8	50	91	0	469	25	22	31	20	1.98
55096084--55096129	20	2.3	20	85	7	58	28	17	28	26	1.98
55096093--55096130	20	1.9	20	89	10	60	23	18	31	26	1.97
55103659--55103714	29	1.9	29	85	7	78	41	5	25	28	1.77
55103928--55103957	13	2.3	13	94	0	51	33	3	13	50	1.58
55104052--55104344	50	5.8	50	91	1	462	25	22	31	20	1.98
55106451--55106491	20	2.0	20	90	0	64	43	41	0	14	1.45
55106532--55106589	22	2.7	21	76	7	55	46	22	3	27	1.68
55106807--55106901	40	2.4	40	87	0	127	32	21	17	28	1.96
55110971--55111006	12	3.0	12	87	0	54	52	8	2	36	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55111788--55111827	21	1.9	21	94	0	71	27	20	30	22	1.98
55112301--55112454	18	8.2	18	72	11	103	23	8	12	55	1.63
55112317--55112364	6	8.0	6	100	0	96	16	0	16	66	1.25
55112318--55112458	12	11.2	12	73	11	86	22	8	14	54	1.66
55112390--55112458	36	1.9	36	93	0	120	21	8	15	53	1.69
55112336--55112442	42	2.5	44	76	13	125	23	9	13	54	1.67
55112389--55112442	6	9.0	6	85	0	54	20	7	14	57	1.61
55112913--55112942	15	2.0	15	93	0	51	23	6	26	43	1.78
55116439--55116503	28	2.3	29	75	19	66	55	7	3	33	1.44
55116533--55116588	3	18.3	3	81	3	67	60	5	1	32	1.29
55117760--55117795	17	2.1	17	90	10	56	5	5	44	44	1.50
55118257--55119193	46	20.4	46	90	0	1437	29	26	16	27	1.97
55120273--55120319	21	2.2	21	84	0	58	25	36	10	27	1.89
55120413--55120459	8	5.6	8	90	9	76	12	12	0	74	1.07
55121270--55121295	9	2.9	9	100	0	52	7	0	0	92	0.39
55122316--55122359	23	1.9	23	100	0	88	25	4	27	43	1.74
55125480--55125659	45	4.0	45	90	1	245	40	19	18	21	1.91
55129520--55129547	13	2.2	13	100	0	56	60	7	0	32	1.24
55129688--55129728	21	2.0	21	85	0	55	63	0	2	34	1.08
55131468--55131656	100	1.9	100	81	4	229	25	20	22	31	1.98
55131661--55132599	132	7.1	132	93	0	1466	28	23	19	28	1.98
55131661--55132243	88	6.6	88	69	7	324	27	24	18	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55132346--55132530	44	4.2	44	66	13	119	29	22	20	27	1.99
55132366--55132558	44	4.4	43	66	11	104	27	24	19	28	1.98
55132594--55132729	44	3.1	44	65	16	100	21	26	25	27	1.99
55133847--55133958	42	2.6	42	92	1	179	25	26	16	31	1.97
55139223--55139247	13	1.9	13	100	0	50	64	8	0	28	1.22
55139381--55139410	12	2.5	12	94	0	51	66	0	0	33	0.92
55139435--55139466	3	10.7	3	93	0	55	65	3	0	31	1.08
55140445--55140475	15	2.1	15	93	0	53	12	9	45	32	1.75
55141574--55141617	17	2.6	17	81	0	52	29	13	11	45	1.79
55147103--55147153	25	2.0	25	85	7	68	37	0	9	52	1.34
55149167--55149241	35	2.1	36	85	5	98	32	5	1	61	1.27
55149165--55149245	37	2.2	38	78	13	96	30	4	1	62	1.24
55149239--55149360	29	4.1	29	74	14	90	38	3	1	56	1.25
55149278--55149335	19	3.0	19	74	2	62	43	0	1	55	1.10
55149280--55149378	9	10.4	9	73	14	65	33	4	2	60	1.27
55157644--55157777	65	2.1	65	98	0	259	34	21	14	29	1.93
55157924--55158031	54	2.0	54	100	0	216	38	20	18	22	1.93
55159419--55159480	30	2.1	29	93	3	106	40	29	17	12	1.87
55166776--55167150	93	4.0	93	87	4	499	26	25	15	32	1.96
55168225--55168258	15	2.3	15	100	0	68	50	23	0	26	1.50
55168921--55168964	23	1.9	23	86	9	63	34	2	0	63	1.07
55173266--55173291	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55180107--55180138	15	2.1	16	88	11	50	46	0	0	53	1.00
55184948--55184995	22	2.2	22	96	0	87	54	4	20	20	1.61
55187529--55187553	2	12.5	2	100	0	50	52	0	0	48	1.00
55194130--55194224	46	2.1	46	92	4	156	32	4	11	51	1.57
55194699--55194746	22	2.2	22	92	0	78	12	16	12	58	1.63
55194763--55194834	20	3.5	20	74	10	72	69	9	13	6	1.36
55200332--55200409	23	3.4	23	66	25	65	32	2	11	53	1.50
55200325--55200419	46	2.1	46	95	0	172	31	3	11	53	1.52
55202941--55202989	3	16.7	3	91	4	82	67	2	0	30	1.02
55212647--55212691	21	2.1	23	88	12	69	46	0	4	48	1.22
55212832--55212879	22	2.1	23	88	3	71	43	0	33	22	1.54
55214060--55214115	25	2.2	25	77	3	58	35	12	5	46	1.65
55221330--55221387	25	2.3	26	78	3	64	67	5	5	22	1.31
55225286--55225318	17	1.9	18	88	11	52	45	0	12	42	1.41
55225625--55225692	29	2.3	29	78	14	77	27	14	14	42	1.85
55226628--55226683	29	1.9	29	85	7	78	42	19	14	23	1.88
55228081--55228130	20	2.5	20	87	9	66	28	2	4	66	1.21
55230188--55230239	24	2.2	24	92	0	86	34	1	7	55	1.39
55231269--55231318	27	1.9	27	84	8	68	60	10	14	16	1.59
55231717--55231747	10	3.1	10	95	0	53	48	0	9	41	1.36
55231733--55231797	26	2.5	26	72	16	62	61	0	6	32	1.21
55231780--55231845	33	2.0	33	85	11	91	48	3	9	39	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55231826--55231866	18	2.3	18	87	4	66	51	0	7	41	1.30
55231944--55231995	26	2.0	27	88	3	79	61	1	7	28	1.34
55232648--55232692	2	22.5	2	100	0	90	0	0	48	51	1.00
55233064--55233090	13	2.1	13	100	0	54	7	14	37	40	1.74
55243943--55243976	10	3.1	11	91	8	52	0	8	0	91	0.43
55246006--55246043	15	2.5	16	83	12	53	68	10	0	21	1.19
55246756--55246796	20	2.0	20	90	9	66	63	17	4	14	1.47
55247399--55247481	24	3.3	24	66	33	66	43	8	1	46	1.41
55247358--55247524	52	3.2	51	94	3	280	44	6	1	46	1.39
55250099--55250139	22	1.9	21	85	14	57	26	21	21	29	1.99
55254253--55254340	13	7.5	13	67	26	54	36	1	0	62	1.03
55254251--55254339	21	4.0	21	77	11	97	38	1	0	60	1.04
55257495--55257528	16	2.1	16	88	5	50	35	0	11	52	1.38
55264027--55264925	457	2.0	455	98	0	1753	27	13	18	40	1.88
55268060--55268303	16	16.5	16	62	26	58	51	2	1	45	1.20
55268017--55268093	21	3.8	21	68	27	51	55	0	0	44	0.99
55268011--55268202	100	1.9	102	88	6	284	52	1	1	45	1.14
55268113--55268310	44	4.8	44	68	21	124	50	2	1	45	1.22
55268096--55268354	120	2.2	120	92	2	432	48	2	1	47	1.25
55268258--55268447	100	1.9	100	95	0	344	50	1	2	45	1.25
55268358--55268429	16	4.5	16	72	19	53	54	1	0	44	1.08
55268382--55268429	18	2.8	18	74	22	50	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55268358--55268412	15	3.7	15	79	13	53	52	1	0	45	1.11
55268037--55268516	220	2.2	219	88	5	693	50	2	2	45	1.26
55269507--55269777	137	2.0	138	91	2	447	46	14	14	25	1.81
55276193--55276252	32	1.9	31	82	3	75	63	3	3	30	1.27
55285327--55285429	50	2.1	50	94	0	179	27	24	10	37	1.88
55288124--55288152	13	2.1	14	93	6	51	27	0	3	68	1.05
55300784--55300882	41	2.4	41	89	1	155	24	22	13	40	1.89
55302974--55303018	22	2.0	22	83	8	56	66	6	2	24	1.27
55312231--55312267	16	2.3	16	85	0	56	40	2	32	24	1.69
55312249--55312341	44	2.1	43	82	9	107	34	3	25	36	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218