genome.fa.s23.2.7.7.80.10.50.1000.178.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  178  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53561156--53561260	34	3.3	34	65	20	100	31	0	10	57	1.39
53561158--53561381	60	3.6	60	84	11	285	30	0	12	56	1.41
53560771--53561327	224	2.5	224	90	6	857	29	0	12	57	1.39
53561281--53561364	23	3.8	23	87	9	131	29	0	16	53	1.43
53561279--53561365	42	2.1	38	77	22	102	29	0	16	54	1.42
53561358--53561475	56	2.0	59	87	6	170	32	0	13	53	1.46
53561592--53561628	16	2.4	16	90	4	58	32	2	5	59	1.34
53561699--53561775	27	2.9	27	84	3	84	25	35	20	18	1.95
53564615--53564641	13	2.1	13	100	0	54	29	37	0	33	1.58
53566187--53566239	23	2.2	24	83	9	74	11	7	3	77	1.10
53566898--53566978	26	3.2	24	76	15	74	32	3	3	60	1.32
53566905--53566993	25	3.5	26	83	7	96	34	3	4	57	1.36
53567182--53567274	19	4.8	19	70	10	62	33	4	6	55	1.45
53569800--53570151	147	2.3	150	87	5	489	29	11	7	50	1.67
53571246--53571355	22	5.0	22	87	0	166	31	28	0	40	1.57
53571546--53571579	15	2.3	15	90	5	52	26	0	5	67	1.13
53573718--53574476	126	5.9	126	80	13	706	47	23	0	28	1.57
53573735--53574396	149	4.4	147	88	6	822	48	23	0	28	1.54
53573735--53574321	23	23.9	23	78	15	561	48	22	0	28	1.52
53574181--53574531	57	6.3	58	79	13	280	42	25	1	31	1.64
53573718--53574533	23	31.4	28	73	19	459	46	23	0	29	1.58
53577753--53578018	124	2.1	125	87	2	383	31	23	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53579118--53579154	18	2.1	18	89	0	56	32	8	2	56	1.43
53584745--53584919	3	58.0	3	73	14	78	29	5	2	62	1.31
53584848--53584917	24	3.0	24	85	6	90	30	1	1	67	1.08
53584965--53585005	18	2.3	18	83	4	57	41	9	0	48	1.36
53589257--53589323	6	10.7	6	81	10	55	68	10	5	14	1.37
53589250--53589324	12	5.8	13	76	13	66	70	9	6	13	1.32
53590311--53590369	6	8.9	7	85	10	63	67	0	13	18	1.22
53590316--53590366	26	2.0	26	88	7	77	64	0	15	19	1.29
53590311--53590369	14	4.5	13	82	8	75	67	0	13	18	1.22
53590416--53590449	7	5.0	7	85	7	52	67	0	17	14	1.23
53590416--53590451	14	2.6	14	95	4	65	66	0	19	13	1.24
53591666--53592275	46	13.8	46	73	11	375	29	19	23	28	1.98
53591666--53592270	44	13.8	43	74	7	362	29	19	23	28	1.98
53591885--53592332	87	5.1	87	73	9	318	29	19	22	28	1.98
53591666--53592265	218	2.7	219	88	2	857	29	19	23	28	1.98
53592307--53592358	26	2.0	26	100	0	104	38	11	19	30	1.87
53592490--53592982	44	11.3	44	68	10	174	29	20	22	27	1.98
53592531--53592982	129	3.5	129	81	6	407	29	20	22	27	1.98
53592988--53593353	87	4.2	87	91	1	592	29	22	23	24	1.99
53593443--53593775	84	3.9	86	74	10	315	31	18	23	26	1.97
53593362--53593686	168	1.9	167	91	1	535	32	18	22	26	1.97
53593616--53593771	43	3.6	42	73	10	145	30	17	25	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53593740--53593843	43	2.5	43	82	4	124	27	19	20	32	1.96
53595228--53595411	3	62.0	3	72	14	98	30	5	2	61	1.32
53595463--53595498	18	2.0	18	88	0	54	38	11	0	50	1.38
53597727--53597787	30	2.0	30	100	0	122	19	32	24	22	1.97
53597727--53597808	30	2.7	30	88	3	85	19	32	23	24	1.97
53603595--53603657	28	2.4	25	80	14	81	31	20	19	28	1.97
53603603--53603661	28	2.1	28	100	0	118	33	22	20	23	1.97
53606579--53606629	26	1.9	27	92	4	86	41	3	0	54	1.19
53606696--53606747	18	2.8	19	79	5	70	36	13	0	50	1.42
53606753--53606845	27	3.5	26	91	5	143	58	0	2	39	1.10
53610901--53610937	5	7.4	5	93	0	65	59	0	2	37	1.12
53610901--53610944	15	2.9	15	86	0	52	56	4	2	36	1.32
53616699--53616726	14	2.0	14	100	0	56	50	0	7	42	1.30
53618292--53618343	24	2.1	25	82	7	61	30	9	7	51	1.62
53627779--53627884	42	2.5	41	86	3	140	31	46	3	18	1.67
53632725--53632768	22	2.0	23	86	13	65	38	2	4	54	1.33
53638706--53638750	14	3.3	13	78	9	54	80	6	13	0	0.91
53638926--53638953	8	3.5	8	100	0	56	50	50	0	0	1.00
53641471--53641509	21	1.9	20	84	5	51	17	15	23	43	1.87
53644956--53645011	17	3.3	16	80	9	58	48	0	8	42	1.34
53646213--53646250	5	7.6	5	100	0	76	63	0	0	36	0.95
53653209--53653685	236	2.0	236	99	0	945	41	9	16	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53661506--53661581	39	2.0	38	87	7	109	31	19	14	34	1.92
53666243--53666310	33	2.1	33	83	5	84	45	14	11	27	1.80
53667423--53667483	28	2.2	28	85	5	81	50	3	0	45	1.17
53667423--53667565	44	3.2	42	70	20	119	48	2	2	46	1.28
53667389--53667605	91	2.4	90	86	5	310	47	4	3	45	1.38
53667430--53667586	47	3.4	47	68	15	128	49	3	1	44	1.31
53670536--53670607	33	2.2	33	94	0	126	34	5	15	44	1.70
53670674--53670746	33	2.2	33	97	0	137	35	5	16	42	1.71
53670793--53670879	37	2.4	37	92	0	138	34	8	14	42	1.76
53672058--53672197	69	2.0	69	84	5	185	41	25	9	23	1.84
53673219--53673325	38	2.9	37	87	5	146	54	13	28	4	1.58
53673219--53673337	36	3.2	35	83	8	130	54	12	27	5	1.58
53673604--53673645	15	2.7	16	82	14	52	45	0	2	52	1.13
53673595--53673636	15	2.9	15	82	10	52	47	0	0	52	1.00
53673862--53673905	16	2.8	16	96	0	79	29	38	0	31	1.58
53677663--53677721	30	1.9	31	89	3	93	59	11	8	20	1.58
53680480--53680532	27	2.0	27	81	7	63	35	11	11	41	1.77
53686460--53686566	27	4.0	27	89	4	110	20	19	22	37	1.94
53686493--53686579	27	3.2	27	98	0	165	14	19	25	40	1.90
53686493--53686599	54	2.0	54	83	3	135	17	21	22	38	1.93
53686622--53686772	27	5.3	27	71	22	87	19	15	20	43	1.88
53686674--53686771	27	3.7	26	80	9	108	17	17	22	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53694967--53695111	53	2.7	52	82	4	182	37	14	20	28	1.91
53695242--53695445	28	7.3	27	68	18	96	30	13	25	29	1.94
53695342--53695446	27	3.8	28	71	7	79	27	19	26	26	1.99
53695239--53695445	56	3.7	55	79	8	204	30	14	25	29	1.94
53695401--53695477	28	2.7	27	80	11	82	27	16	31	24	1.97
53696170--53696297	5	25.8	5	98	1	249	59	0	0	40	0.97
53704241--53704284	23	1.9	22	82	17	54	36	25	0	38	1.56
53704328--53704422	45	2.1	45	96	0	172	30	23	18	27	1.98
53704428--53704614	51	3.7	50	77	4	187	29	26	17	26	1.97
53704425--53704610	101	1.8	99	84	5	239	30	25	17	26	1.97
53721771--53721811	19	2.2	18	86	4	55	36	2	0	60	1.10
53721781--53721872	46	2.0	46	83	8	118	39	4	1	55	1.27
53722097--53722123	5	5.4	5	100	0	54	81	0	0	18	0.69
53722282--53722321	21	2.0	20	85	5	53	45	5	0	50	1.23
53722254--53722406	10	15.5	10	67	16	70	36	3	1	58	1.26
53722463--53722512	10	5.1	10	75	22	52	42	0	0	58	0.98
53722517--53722593	30	2.6	30	80	0	91	49	19	3	27	1.66
53725028--53725054	3	9.0	3	100	0	54	33	33	0	33	1.58
53727497--53727554	19	2.9	20	68	25	50	18	10	6	63	1.47
53727821--53727864	24	1.9	24	90	9	74	36	0	2	61	1.09
53727961--53727988	9	3.1	9	100	0	56	57	10	0	32	1.33
53727931--53728072	68	2.1	66	92	2	230	44	9	4	41	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53728061--53728102	16	2.6	16	92	0	66	42	7	2	47	1.43
53736773--53736870	47	2.1	47	96	0	178	26	9	26	37	1.86
53750641--53750704	9	7.5	8	77	16	58	21	1	6	70	1.18
53755711--53755782	29	2.6	27	75	14	74	26	6	1	65	1.26
53755830--53755889	31	1.9	31	96	0	111	40	8	8	43	1.65
53758933--53759045	44	2.6	44	83	8	133	32	21	18	27	1.97
53759052--53759793	44	17.0	44	76	6	578	30	24	14	29	1.94
53759052--53759791	132	5.7	130	81	6	655	30	25	14	29	1.94
53759492--53759657	82	2.0	81	79	7	176	31	25	13	28	1.94
53768976--53769021	18	2.6	18	82	0	56	6	21	4	67	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218