genome.fa.s23.2.7.7.80.10.50.1000.139.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D10
Parameters: 2 7 7 80 10 50 1000
Length:  65706892

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   

This is table  139  of  218  ( 26060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42509749--42509778	14	2.1	14	100	0	60	56	6	13	23	1.60
42513342--42513380	20	2.0	20	89	0	60	28	30	0	41	1.57
42525342--42525401	30	2.0	30	90	0	93	35	11	20	33	1.88
42534039--42534064	5	5.2	5	100	0	52	0	38	0	61	0.96
42534633--42534676	23	1.9	23	90	0	70	27	2	25	45	1.65
42534695--42535076	42	9.1	42	87	1	516	21	18	22	37	1.94
42536256--42536300	20	2.2	20	84	7	56	48	8	8	33	1.65
42537560--42537755	94	2.1	94	84	8	249	41	3	10	44	1.54
42537652--42537697	20	2.2	21	84	3	58	39	0	10	50	1.38
42537651--42537698	21	2.3	22	78	10	55	37	0	10	52	1.36
42537376--42537686	146	2.2	147	85	5	413	45	3	9	41	1.53
42537585--42537786	94	2.1	94	80	7	232	44	3	10	41	1.57
42539053--42539087	3	11.7	3	100	0	70	68	0	0	31	0.90
42540074--42540131	27	2.1	27	87	0	80	43	20	18	17	1.89
42546781--42546975	98	2.0	98	93	0	336	17	11	13	56	1.66
42549027--42549057	15	2.0	16	93	6	55	67	0	32	0	0.91
42551669--42551715	24	2.0	23	83	4	58	55	2	2	40	1.24
42554296--42554371	31	2.5	31	82	4	82	43	11	14	30	1.81
42554234--42554417	90	2.0	91	81	9	214	43	9	19	27	1.82
42555601--42555626	8	3.2	8	100	0	52	61	0	11	26	1.30
42560584--42560800	26	8.3	26	85	1	265	40	20	14	24	1.90
42560580--42560773	78	2.5	78	90	0	307	39	20	14	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42561172--42561267	33	2.9	32	83	6	102	21	20	20	36	1.95
42561158--42561246	33	3.0	28	71	15	70	20	21	23	34	1.96
42565950--42565985	18	2.0	18	94	0	63	22	13	11	52	1.72
42565957--42565992	18	2.1	18	89	5	56	22	22	11	44	1.84
42566563--42566589	10	2.7	10	100	0	54	40	14	0	44	1.46
42569015--42569047	13	2.6	13	90	4	50	63	0	3	33	1.10
42569999--42570108	40	2.7	42	83	6	129	25	24	18	31	1.97
42572517--42572554	19	2.0	20	84	5	51	23	2	0	73	0.95
42584983--42585011	13	2.2	13	100	0	58	41	41	0	17	1.49
42585152--42585228	9	8.4	9	85	8	102	22	10	27	40	1.86
42585388--42585412	12	2.1	12	100	0	50	16	24	36	24	1.94
42585744--42585796	22	2.3	23	78	12	56	50	3	9	35	1.53
42590480--42590510	14	2.2	14	100	0	62	48	16	22	12	1.80
42591264--42591319	21	2.7	21	88	0	85	25	21	32	21	1.98
42591284--42591357	21	3.5	21	70	17	55	27	17	35	20	1.95
42594403--42594495	37	2.5	38	79	10	111	34	40	9	15	1.79
42594969--42595041	21	3.5	21	77	3	67	23	16	35	24	1.95
42597242--42597280	18	2.1	18	85	4	51	64	0	17	17	1.30
42605219--42605291	37	2.0	37	100	0	146	23	5	19	52	1.67
42612626--42613051	47	9.1	47	93	0	665	32	9	29	28	1.88
42613170--42613248	37	2.1	37	88	4	115	25	18	30	25	1.98
42615550--42615799	27	9.3	27	77	6	213	44	17	18	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42615550--42615799	54	4.6	54	78	4	247	44	17	18	19	1.87
42615560--42615799	81	3.0	81	83	3	288	44	18	18	19	1.87
42616155--42616222	28	2.4	28	85	4	93	19	22	26	32	1.97
42619190--42619251	28	2.2	28	82	2	81	33	24	20	20	1.97
42619592--42619771	27	6.7	27	78	6	168	16	18	20	44	1.87
42622753--42622797	21	2.1	21	95	0	81	37	35	8	17	1.81
42622758--42622805	21	2.5	19	83	10	62	41	33	8	16	1.78
42638961--42639034	25	3.0	25	87	0	112	17	36	28	17	1.93
42640064--42640204	35	4.0	35	82	4	122	39	31	11	17	1.85
42652640--42652674	13	2.7	13	90	0	52	22	40	22	14	1.90
42659864--42660271	143	2.9	141	87	2	536	27	22	20	28	1.99
42662029--42662136	8	13.4	8	70	24	68	2	3	12	81	0.93
42662029--42662136	15	6.7	15	74	16	83	2	3	12	81	0.93
42662049--42662086	19	2.0	20	94	5	69	2	7	15	73	1.17
42662029--42662136	34	3.4	32	86	10	116	2	3	12	81	0.93
42662036--42662136	31	3.2	31	86	12	125	1	3	12	81	0.92
42662029--42662140	24	4.7	23	78	13	100	2	4	11	81	0.94
42662036--42662128	7	12.9	7	76	12	82	2	4	12	80	0.95
42664619--42664668	24	2.1	24	84	0	64	10	18	26	46	1.80
42673525--42673553	14	2.1	14	93	6	51	62	3	20	13	1.46
42674610--42674670	27	2.3	27	82	5	70	37	14	22	24	1.92
42678666--42678707	13	3.0	14	82	6	50	45	7	4	42	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42685484--42685509	12	2.2	12	100	0	52	34	7	15	42	1.75
42685489--42685531	17	2.6	15	77	22	50	39	6	18	34	1.78
42685501--42685545	23	2.0	23	86	4	65	37	6	17	37	1.76
42685821--42685915	3	31.0	3	70	16	52	29	2	3	65	1.20
42685817--42685853	7	5.4	7	93	6	67	27	0	0	72	0.84
42686049--42686083	17	2.1	17	94	0	61	37	11	0	51	1.38
42686160--42686208	19	2.7	18	80	20	50	38	6	0	55	1.25
42686211--42686286	32	2.3	35	86	6	104	38	2	5	53	1.37
42686266--42686307	21	2.0	21	90	0	66	40	2	4	52	1.35
42686445--42686493	4	12.5	4	76	20	50	24	0	4	71	1.03
42686445--42686493	21	2.3	21	82	10	55	24	0	4	71	1.03
42691494--42691985	44	11.2	44	73	6	379	27	15	26	30	1.96
42691477--42691807	132	2.5	132	89	2	502	27	15	26	30	1.96
42691560--42692011	89	5.1	89	77	5	317	28	16	26	28	1.97
42691517--42691985	221	2.1	221	91	1	744	27	15	26	30	1.96
42691966--42692195	88	2.6	88	90	0	361	26	30	23	18	1.97
42691979--42692228	88	2.8	88	85	1	277	26	30	24	18	1.98
42692195--42692404	44	4.8	44	84	3	271	25	16	27	30	1.96
42693197--42693241	23	2.0	23	86	4	65	37	6	17	37	1.76
42693512--42693541	7	4.4	7	91	8	53	26	0	0	73	0.84
42693567--42693606	3	13.3	3	89	0	62	32	2	2	62	1.22
42693730--42693773	17	2.6	17	85	3	63	40	11	0	47	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42693954--42694010	27	2.2	26	80	3	60	33	3	5	57	1.38
42693933--42693992	31	1.9	32	83	10	79	35	3	3	58	1.31
42694135--42694187	4	13.5	4	80	11	56	20	0	5	73	1.03
42698266--42698386	58	2.1	58	100	0	242	19	21	16	42	1.88
42701958--42701983	12	2.2	12	100	0	52	50	26	7	15	1.71
42711763--42711794	2	16.0	2	100	0	64	50	0	50	0	1.00
42712441--42712520	21	3.6	21	88	8	106	52	1	1	45	1.16
42713981--42714064	6	14.0	6	69	14	57	61	2	5	29	1.32
42713988--42714053	15	4.2	15	69	17	53	62	3	6	28	1.34
42714087--42714142	15	3.7	15	75	0	58	67	5	1	25	1.21
42715551--42715806	50	5.1	50	75	3	230	23	21	23	32	1.98
42715551--42715809	100	2.6	100	85	4	328	24	20	22	32	1.98
42716588--42716671	42	2.0	42	83	0	105	28	29	11	29	1.92
42716745--42716778	7	4.9	7	88	0	50	11	5	0	82	0.83
42717632--42717679	21	2.3	21	86	10	64	2	18	2	77	0.97
42717635--42717674	15	2.7	15	84	0	53	0	17	2	80	0.83
42717665--42717736	6	12.7	6	76	12	55	11	6	11	70	1.32
42722688--42722853	3	56.0	3	68	11	65	61	4	5	28	1.37
42724256--42724514	50	5.2	50	76	0	259	23	20	23	32	1.98
42724250--42724514	100	2.7	100	87	1	379	23	20	24	32	1.98
42725778--42725818	7	5.9	7	82	0	55	12	7	0	80	0.90
42725776--42725820	21	2.1	21	91	0	72	13	11	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42728328--42728371	8	5.1	8	81	13	52	68	0	2	29	1.02
42728328--42728394	18	3.7	18	73	11	64	61	0	1	37	1.05
42728330--42728370	19	2.2	18	86	4	55	73	0	2	24	0.96
42741756--42741797	17	2.4	17	88	4	57	64	2	2	30	1.19
42743684--42743726	10	4.1	10	82	11	50	34	0	6	58	1.25
42753459--42753642	40	4.6	40	82	6	196	23	20	27	28	1.99
42753459--42753639	80	2.3	81	83	9	221	23	20	27	27	1.99
42761279--42761462	40	4.6	40	82	6	196	23	20	27	28	1.99
42761279--42761459	80	2.3	81	83	9	221	23	20	27	27	1.99
42761360--42761509	40	3.8	38	80	10	131	25	22	28	24	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218